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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0117100 |
| Transcript ID | LotjaGi3g1v0117100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cytokinin oxidase/dehydrogenase-like protein; TAIR: AT3G63440.1 cytokinin oxidase/dehydrogenase 6; Swiss-Prot: sp|Q9LY71|CKX6_ARATH Cytokinin dehydrogenase 6; TrEMBL-Plants: tr|A0A0U2VEG5|A0A0U2VEG5_LOTJA Cytokinin oxidase/dehydrogenase 8; Found in the gene: LotjaGi3g1v0117100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:14351358..14356165) extracted from Lotus japonicus Gifu genome v1.2.
GATCACATCAAAAGGGAAACATACGACCAGACTCAAACCTTAGAAATGCCAGCCTACCTTATTTTCATCTCAAGATAAGA ACCACTAAAAACTTGTCCAATAGCTTTGTACTAAAGATTCTAAGTCAGATCAGCCGCAGTAGGGCAGTGGTGGTTTTGGA GCATTATATGTCGGTCAAGAATTGCATCAGATATGTTAGTAGCACTCTTTCATTCCTTTTCTTTTTTTAGTCTGTCTTAA ATTGTTTCCATTTGTTCTTCTTATAGGTTTTCTTGGCCTTTAAAAGAGGACCCAAGAAGAGGTCCACATGGCCAATCAAT GGCCAGAGTGAGTCCCAACCCAACCCAACCGAGCACAAATGAATGAAACTTCATGTGTCACATGGACCAAGAGAGACCCC ACCAATGTCATCTCTCCTCTTTCTATTTTAGAATTTTGATTAGGATGTTCAAAAACTAGCTTATAGGAAAAGGCTGTTCT TCCATTTCCAGGACTATTTTGGCTCCTTCACACCTAGAAGGTTAGAACGAGATATCTGGAGCGTGAAATTTGCATGAATG TTCATGCTGACCCATGTATGAGAGATTTTCAATAAATCGATTTCGGATAAGCTTTAATATGCTTATAAAAAAAAGAATAA ACTTTAATATCATCTTAGAATTCGAGTTAGACCTAACTCTACCCAAAACTAGGTTAGATGCGAGAGTAGCTCTACTATTT ATAAATGATTATTGTAGTCATATATCTACTCTCTCTCTCTAGTCAAGATGTAATTTCTCAACAATTTATTAATACATGCC CACAGCAAGTCCTTCTCATGGAAAGAATACTCCGTGTATAACAGCAATGGACAGTAGCAAGAGCAAGGACATTTTCATTT CTAAAATTGGGAAAATAGAGGACACTTAAAATTGGTTAATGTCCAAAAAAATTGAAACATGTCTGTCCCTGATGGAAAGA TTGTGGTTTCAACTGTTTGGAAAAGTAAGATTTTTTAGAATCTCTCTTTGTTGTCCTCACTTTTCCTCTTCAACTTGGCA TAACCATTGTGGCTTTGGCTTCTCTTATAAAGAAACTAACCCCAGAGGGATAGATAACCAAAAAGAATCCTCCTCCCTAG TAATCATAGTTCATAATAAGGATTCTCTTACCTGAAAAGTTGACTCAGCCACCTAAAAACTTCTTTAAATTCTTCTCCAA CCCTCTACTCCTTTGCCACTCCATCACTTCTCCTCTAGTTTAAACAGCTTCTTCAGCCTTTAAAAAATGAGATATCTATC ACTTAGCCTCACTAGAGAATACAACATTATGTTCATAAGAGGCTTCATGATTCTGTTTCTCAGTTGTATCACCATTAGGC TTAATTTCAGCATTTCAACCATCCCTTCTTCACTGAAAACACTTCCCTTGGAAGGACACTTAAGCTTTGCTGAAGCTGAC CTCAAACATGCGGCGAGAGACTTCGGCAACAGGTACCAATCTCACCCCATGGCAGTGCTGCATCCGAAGTCAGTTTCTGA CATTGCAGCCACCATAAAGCATGTATGGAACCTCGGTCCGAGTTCTCATCTTACTATTGCAGCCAGAGGCCATGGCCACT CACTCCATGGCCAGGCACAGGCACATGGAGGAGTTGTGATCAACATGGAATCAATCAAGGTCCCTCAAATGCAGGTTTAT TCAGGAGAATTCCCTTATGTGGATGTCTCAGGTGGTGAATTGTGGGTGAACATACTGCATGAGACACTGAGGTTTGGTTT AGCACCAAGATCTTGGACAGACTATTTGCATCTCACAGTTGGTGGCACTTTATCAAATGCTGGTGTTAGTGGCCAGGCTT TTAGGCATGGTCCCCAGATAAGTAATGTTCAGAAGCTGGAGGTTGTTACAGGTTGGTAACCTTATTGTGAAAAAAAAAAA AAACATATATCGGATCTCTTTTCTCTGAAACAATTTTGACATCTGGAAGCGGCTTACAAAAGCTTCTCCATATAATTGGA TTTGACTAGGACAAGGTGGGAAAATCATATTCTAGATAAATCAGCTTCTATTTGTCTCTTCTGAACTAATATTTCACTTG AAATTGATATAATAGCTCCCCAAAATCCCTTTCTTTAACTTGACCTTTGGCCCGTAAGAAAGTCTCTATTTGCATGTTTG GAAATTCTTCTAAAATTAATTTTAAATTCAAAATAATTATGAGAAGAAGCTTCTTTGAGTAACTTCTGAGTTTGACTCTG AAGAGAGAGAAGCTGGTCCCAACATGCTAAAATAAGTGGATGCAAACAAATTTTAAATAAAAGAAAATGTTTTTTTCTTG GATGAATGAAGTAAGATGGGACAATGAATAACTGCAGGAACTGGGGAGGTTGTAAACTGTTCTGATGAGAAGAATGGTGA GCTCTTCTACAGTGTGCTTGGGGGCCTAGGCCAGTTTGGCATCATAACAAGAGCAAGAATCTTCCTAGAACCAGCACCCA CCATGGTAATGCATCAAAGGGAGATGTTGGAAACAAAGTTCATTGACTTTGGTTGGTTTGCAAGTTCCATCTGTCATCAT AACATGTTTCTATTTTGAACAGGTAAAATGGATTAGAGTGCTGTATGCAGATTTCACAGCATTCACAAGAGACCAAGAGC AATTAATATTTTCCCAAAAAGCTTTTGATTATATTGAAGGATTTGTCATCATAAACAGAACAGGTCTGCTAAATAACTGG AGATTATCCTTCAACCCACAAGATCCAGTTGAAGCTAGTAAGTTCAAGTCAGATGGAAGAACCCTCTTCTGTCTAGAACT GGCCAAATACTTCAATCAGGAAGAAAGCTTTGCAGTAAATCAGGTACAAGAGCAAAGGTTCAACCTATACATAAAACTAT CCGGTAGCATGTTTGGAAAACATTCTACAATTGATTCTAAAGTTAAAATTCAGACAAGAAACTTCTGTACCAGCTTCTAA ATGACAAAATTGATTCATAAAAAAAAAAGTTGATCCAAACATACTATCGGCCTCATATGAACAAAATTTATCTCACTATG TTTCTTTTGTGATGCAGGAAGTTGAGAAACATTTGACCCACTTGAATTACATCCCATCAACACTTTTTCAAACAGAAGTC ACATATGTAGACTTTTTAGACAGGGTGCACATCACAGAGGTAAAGTTGCGTTCAAAAGGCCTATGGGATATTCCACACCC CTGGCTCAATCTTTTCATACCCCAAAGCAAAATACAAAAATTTGCAAAAGAAGTCTTCGGCAATATTGTGAGGGAAACAA GCAATGGCCCGGTCCTAATCTACCCAGTAAATAAATCAAAGTAATGGTTCACGGTCACACTTCTCATAAATTTGTCATTT CTACCGACAAGAAGCTTTTGTGAGCAGTAGTTGCTGTATTTCAGAATTGATTCTGAGGAAATGGAAGCCGGTCGAAACAT GAAATAATAGCTTGTTTGGACCGCTTATTTTTTCTTACAATCAATTCTATCACCCAGAAAAGCTACTCCCAATCACAAAA GTTTCTCCTCGTGATTGATTTTGGACTTTTGAATCAATGGTTGAAAGATTTCCAAACGCAATTAAATCCATAATTTAAAA TATAATGTTGTTTGCAGGTGGGACAACAGAACTTCTGTTGTTACCCCAGAGGAAGATATTTTCTACTTGGTGGCATTTCT TGCCTCTGCAATCCCCTCTTCCAATGGACCTGATGGTCTTGAACACATTCTAAGTCAGAACAAAAGAATCTTAGAATACT GTGAAAGAGCCCAACTTGGAGTCAAGCAATATTTAGCCCACTACACTACACAGGAACAATGGAGGGTGCATTTTGGTCCT CAATGGGAGATTTTCCAGCAAAGAAAATCTGTTTATGACCCTTTGGCAATACTTGCTCCTGGCCAAGGAATATTTCCAAA ATCAATAACCTTAGCATGATGGCAGCCACATTTTATTAATCTGGAAATGAATTAGCCCCTAATGCCAAATGTGAGCTGAA TTAGGATCTCTCATATTACATGACAATATCAAGTGAAACATTGTGTTTTTCTCTCTCTTCGTAAACATTTAGAGGAATCC CCTATATAATGCTTATGAGATGAGAGATATACACAATATTTCAATATGATAGTGTCATGTAAAATTTTCACCTAAAATGA TCCAGATCCGAATGCCACCTTACATAGTGTGTATGTGTAGCACTGTGGAAGCAGAGTGTGGCTAAGATTTGTTCAACTAA AGACAAGAAACCTTTAATCAGAGGTTTCCAGGAATATACGGATATTATCAGTGCTACAACGAATGTGTATAACAATTTAC ACAGTATCTACTGTAGCCAATTTCAAGAAAGAAAATAAGTTATATGCACATGTTACATCAATATTAAGACAAGTAACAAA AACCAATTCATCAATAACAATGGTTCTAAAATGTGGACCGTATCACATGTGTCTAAAATATTGGAGTTGTGGCAAGTACT TCAATGGCTGTGAGAGTAAGTGGCAGCACTGAAAATTGGACAGAAGGGATGAATTTTTTTTGTTTAAACCTATCATCCAG TTAGTCAATCTTGTTTGAGACACGTTTGACTGCTATGGGCGACATAGCTATATCTAACAATATTTAACATGGATGAATTC ACAATGACTCGAAACCGAAATATTTACTTAGAACTAAAACAACCACAAGTCAGTTGGCTTGTGTGTTTGGTGGTAGAAGG GATAAATTTTGGATGGAAGGAAAGTTATAATTTTTGGGATGGAACATGAGATGTTTAGGGATTAATAAACTAATTATGGA AATTATGC
CDS sequence (LotjaGi3g1v0117100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGATATCTATCACTTAGCCTCACTAGAGAATACAACATTATGTTCATAAGAGGCTTCATGATTCTGTTTCTCAGTTG TATCACCATTAGGCTTAATTTCAGCATTTCAACCATCCCTTCTTCACTGAAAACACTTCCCTTGGAAGGACACTTAAGCT TTGCTGAAGCTGACCTCAAACATGCGGCGAGAGACTTCGGCAACAGGTACCAATCTCACCCCATGGCAGTGCTGCATCCG AAGTCAGTTTCTGACATTGCAGCCACCATAAAGCATGTATGGAACCTCGGTCCGAGTTCTCATCTTACTATTGCAGCCAG AGGCCATGGCCACTCACTCCATGGCCAGGCACAGGCACATGGAGGAGTTGTGATCAACATGGAATCAATCAAGGTCCCTC AAATGCAGGTTTATTCAGGAGAATTCCCTTATGTGGATGTCTCAGGTGGTGAATTGTGGGTGAACATACTGCATGAGACA CTGAGGTTTGGTTTAGCACCAAGATCTTGGACAGACTATTTGCATCTCACAGTTGGTGGCACTTTATCAAATGCTGGTGT TAGTGGCCAGGCTTTTAGGCATGGTCCCCAGATAAGTAATGTTCAGAAGCTGGAGGTTGTTACAGGAACTGGGGAGGTTG TAAACTGTTCTGATGAGAAGAATGGTGAGCTCTTCTACAGTGTGCTTGGGGGCCTAGGCCAGTTTGGCATCATAACAAGA GCAAGAATCTTCCTAGAACCAGCACCCACCATGGTAAAATGGATTAGAGTGCTGTATGCAGATTTCACAGCATTCACAAG AGACCAAGAGCAATTAATATTTTCCCAAAAAGCTTTTGATTATATTGAAGGATTTGTCATCATAAACAGAACAGGTCTGC TAAATAACTGGAGATTATCCTTCAACCCACAAGATCCAGTTGAAGCTAGTAAGTTCAAGTCAGATGGAAGAACCCTCTTC TGTCTAGAACTGGCCAAATACTTCAATCAGGAAGAAAGCTTTGCAGTAAATCAGGAAGTTGAGAAACATTTGACCCACTT GAATTACATCCCATCAACACTTTTTCAAACAGAAGTCACATATGTAGACTTTTTAGACAGGGTGCACATCACAGAGGTAA AGTTGCGTTCAAAAGGCCTATGGGATATTCCACACCCCTGGCTCAATCTTTTCATACCCCAAAGCAAAATACAAAAATTT GCAAAAGAAGTCTTCGGCAATATTGTGAGGGAAACAAGCAATGGCCCGGTCCTAATCTACCCAGTAAATAAATCAAAGTG GGACAACAGAACTTCTGTTGTTACCCCAGAGGAAGATATTTTCTACTTGGTGGCATTTCTTGCCTCTGCAATCCCCTCTT CCAATGGACCTGATGGTCTTGAACACATTCTAAGTCAGAACAAAAGAATCTTAGAATACTGTGAAAGAGCCCAACTTGGA GTCAAGCAATATTTAGCCCACTACACTACACAGGAACAATGGAGGGTGCATTTTGGTCCTCAATGGGAGATTTTCCAGCA AAGAAAATCTGTTTATGACCCTTTGGCAATACTTGCTCCTGGCCAAGGAATATTTCCAAAATCAATAACCTTAGCATGA
Protein sequence (LotjaGi3g1v0117100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRYLSLSLTREYNIMFIRGFMILFLSCITIRLNFSISTIPSSLKTLPLEGHLSFAEADLKHAARDFGNRYQSHPMAVLHP KSVSDIAATIKHVWNLGPSSHLTIAARGHGHSLHGQAQAHGGVVINMESIKVPQMQVYSGEFPYVDVSGGELWVNILHET LRFGLAPRSWTDYLHLTVGGTLSNAGVSGQAFRHGPQISNVQKLEVVTGTGEVVNCSDEKNGELFYSVLGGLGQFGIITR ARIFLEPAPTMVKWIRVLYADFTAFTRDQEQLIFSQKAFDYIEGFVIINRTGLLNNWRLSFNPQDPVEASKFKSDGRTLF CLELAKYFNQEESFAVNQEVEKHLTHLNYIPSTLFQTEVTYVDFLDRVHITEVKLRSKGLWDIPHPWLNLFIPQSKIQKF AKEVFGNIVRETSNGPVLIYPVNKSKWDNRTSVVTPEEDIFYLVAFLASAIPSSNGPDGLEHILSQNKRILEYCERAQLG VKQYLAHYTTQEQWRVHFGPQWEIFQQRKSVYDPLAILAPGQGIFPKSITLA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 529 | 529 | 0.0 | – | |
| PANTHER | 1 | 529 | 529 | 0.0 | – | |
| Phobius | 1 | 11 | 11 | - | – | |
| TMHMM | 12 | 34 | 23 | - | – | |
| Phobius | 12 | 34 | 23 | - | – | |
| Phobius | 35 | 532 | 498 | - | – | |
| SUPERFAMILY | 48 | 247 | 200 | 7.01E-41 | ||
| Gene3D | 62 | 525 | 464 | 4.7E-202 | ||
| ProSiteProfiles | 70 | 248 | 179 | 15.408 | ||
| ProSitePatterns | 74 | 109 | 36 | - | ||
| Pfam | 74 | 217 | 144 | 2.2E-18 | ||
| Gene3D | 127 | 250 | 124 | 4.7E-202 | ||
| Pfam | 249 | 525 | 277 | 3.1E-115 | ||
| SUPERFAMILY | 249 | 525 | 277 | 5.23E-83 | ||
| Gene3D | 252 | 485 | 234 | 4.7E-202 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Biological process | Cytokinin metabolic process | The chemical reactions and pathways involving cytokinins, a class of adenine-derived compounds that can function in plants as growth regulators. | ||
| Molecular function | Oxidoreductase activity | Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. | ||
| Molecular function | Cytokinin dehydrogenase activity | Catalysis of the reaction: N6-dimethylallyladenine + acceptor + H2O = adenine + 3-methylbut-2-enal + reduced electron acceptor. | ||
| Molecular function | Flavin adenine dinucleotide binding | Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. | ||
| Molecular function | FAD binding | Interacting selectively and non-covalently with the oxidized form, FAD, of flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes. |
Expression pattern of LotjaGi3g1v0117100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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