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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0164800 |
Transcript ID | LotjaGi3g1v0164800.2 |
Related isoforms 5 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Cyclic nucleotide-gated channel; TAIR: AT2G28260.1 cyclic nucleotide-gated channel 15; Swiss-Prot: sp|A0A072VMJ3|CN15C_MEDTR Protein CNGC15c; TrEMBL-Plants: tr|A0A0S3SGM8|A0A0S3SGM8_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0164800 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:22441085..22446570) extracted from Lotus japonicus Gifu genome v1.2.
AATTAATGTTACCTTCCTTGCATAGTCTGTTTCATCACGATTATGAACGCGTTTTTAAATATAATCTTGGTTTGACATTA TTCCCTCAATTTTAATGGGAGAGTGGCATATATACAAGGAAATGAATATACTCTTCATGATTCATCTCTCACTCTGCATT GCCCCTATGACCCATTACACATTTTTCTATCCTTGAATTGGTTTCTAGTTCGTCGGTGGAAAATAAAGAAGCTACACTAT TGCTACAGCTATGAGTTCTTGAGCACTTGGTGTCAATGTGACATGTCTTGAAGCAGAAAGAGATGATAGAGATTCTCTCC CACTTTACTCGGTGCTCCATCTCTTTTTGTTGAAATAGATGTAAGAAACCAAATGCATGTAATGTTTGTTGGCATCTTCT TTATTGTGATCTTTTACTTTCTTGCTGCAACTAGTGTTCTAAGCTGCTTTTCCTATTTATGGTATCTATAGATGAGGTTT CATTTGAAATTTTGAATTTACTTACCTCATGTTAGTGGCTTTACTTGAAGCTGCTTTTGGTTGTTCTAGTCCTACTGTTG GTATTTCATAAGAATATAAGTCCATCTTTAAAAATCTTTCTACATTTTGACTCCAAAATCAGGAGAAGTTTCGAACTTTC GATGAGTAGCTTCTGGTTTCTATAGTTGATTTTGAGGAAAAAGAAGTTGATCCAAACGTAATATAAATTTGGGTCCAAAT TTTACATTTTGATTTACATTGGATGTTACAAAGTACATGTAATTTATGATTCAAAAGTTCCCTCACTAGAGTGTTGCTGA ATCTAAAGTTATCAGATTTCTCCCCCTTTACGTAAGGAATTTCACTTTTAAATTATGCTAATTGTTTATCATCTATTCCA TTGTTCATAAGAATCCAGGTTTTAACAATCATGGAGGGGTCAAACTCACTAGTGAAATAATCTTCAACATTCTTTGACTA CTGGTTTAACAATTAGCAGCTATGATTTAACCCATGTTTCTTCACCTTTCTTCCAGATTGATATTTTTGATTGAAGAGAA GTTGGTGTTAATTTTTTGGAAAACCATGATGGGTTTTGCTAATCCAAGATCTGAAAGGTGTGTTTCCTTCACAATATTTT TGATGTGGTTACAGCCTTATTGGAGCTTATTTAATACAAAGAGCACTAGATAAGCTCCAATAAATGCTTTTGGCTTTCAT CCAAACGGGTTCTACTTCTACTACTGCTTAAGAGTCTTCAACGTAACAATCAAATGCATTCTTTGAATAACTCAATAAAT AAATTTCTTTTTATAGTTTATAAGCTTTTAACAAGGAAATTAATGTTCTAGGCATGAAGATGATCCTGAAGTAGAAAAGT TCCCTTCAACTAGCGGTGAAAGTGGGATTAAGATTAAATACAACATTGATGGAACAAAAATACCTGAGCATAGTTCCAAA AGGGCTCAAAAGAGGGTAGCAGGGAAGACAGGGAAGTTCTTGAAAGCAAGAGTACTGTCAAGAGTGTTCTCAGAGGACTG CGAGAGAGTGAAGAGAAGGGTGTTAGATCCTCGCGGACAAACAATCCACCGTTGGAACAAGATTTTCTTAATAGCATCAT TAGTGTCTTTGTTTGTAGACCCGTTGTTCTTTTATTTGCCAGTGGTTCAAGATGAAGTGTGCATAGACATTGGAACAACT CTTGAAGTTATCCTTACAGTTGTTAGATCAGTTGGGGATGTGTTTTACATGATTCAGATTATGATGAAGTTTCGTACAGC TTATGTTGCTCCTTCTTCACAAGTATTTGGGAGAGGAGAACTTGTTCTAGGCTATTCTAAGATTGCTGTTAGGTACCTCA GAAAGGGATTCTGGTTAGACTGTGTAGCTGCATTGCCCCTTCCTCAGGTACCTCACTCTAAAATCTTCTTTAGTTTAATC AATATGATGATACTTTTACGAATCAAGATCTTCTGTCCTCGTTTGGTGTCCCCTTATATGTCCCACTAATAAAATTGTGT TATGTCAATTAAAAAATGGTATGAATATGACGGTTATTACCTTATTACATGTGTGTTGGTGGGTCAGAGAAAGGGTCATC AAATTGGGATAGAAGATTTCAACCCTTAAGGGGCTGAATAATGAATAGCTCTTCTGTTATGTTTGTTTGTTCCAGGTATT GATTTGGATTATTATCCCAGTTCTTAGGGGTTCAACCATGGCAAACACGAAAAACGTGCTTCGCTTTTTCATCATTTTCC AATATGTTCCAAGACTTTATTTGATTTTCCCACTTTCATCACAAATTGTGAAAGCTACAGGGGTTGTGACAGAAACAGCT TGGGCAGGTGCTGCTTACAACCTGATGCTTTACATGCTGGCTAGCCATGTAAGTAGAAATACTGCATTTTCTTATTGCTC AAGCAGCTGAAGCATTTTCCTTTTCATCATGTTTATCAAGGGAATTTAGTCTTGAAGATAAAACTTAAAAGTGTTTGGTG GAGACCAAATTTTATTTCCTCACAAGCTAAACTAGAATGTGGTTGAAGTTTTTGCCTAATGTTAACATTATATGACTTAA AAGAGTTAAAAGTACTCCTTCAGTCACATCTTGAGATTTCATCCACCAAGTAAACACTCCATCTACTCTTAGGATGAAAA CATGTATTAGTCTTGCAAAAATAAATGTGTATTTGGATTTCTGTTGAACTCAATGCTGATCTACGCTAAAGTCAGAGTGA CAAAATCTTGTTTCACCATTTGTGTGTTGGGATATGTGCTTCTCAAGTGGGAAACCAAACACACTAAGTGCATGTTTCGA AACTCTTGTACAATTGATTATGAAGTCATAATCAATTCCGGGGAGAAACTTTTGTGAGTAGCTTCTAGATTTCAGAATTG AATATGATGAAAGAAAAGCTGATCCAATTTCTGAAGCGACTGTTATGGATGTTTTAATTCTGTTGGCAAACTATGATTTA TATTATATACAATATTGATAATGCAGACAAATTTTACAAAAGAATAGTACAGAACAATTGAAACACCAAATTTTATTTCT TTTGTTTTGTTTTTTCTAATGGGAATTGGGGAATGTTGTGAATAGGTTTTAGGAGCTTGCTGGTACCTTCTATCAATCGA ACGACAAGAAGCATGTTGGAAAAGTGCGTGCAATCTGGAGAATTCATCTTGTCATTATGGATTCTTTGATTGCCATAGGG TTAATGATGCTATCAGGGTGTCCTGGTTTACAGCTAGTAATATCACAGATTTATGTTCACCAAAAGCTGATTTTTATCCC TTTGGTATATATGCTGATGCTGTGACTTCTCAAGTTACATCCTCTGCATTCTTCAATAAGTACTTCTTTTGTCTCTGGTG GGGTCTAAGAAATCTGAGGTAAGTTTCATGAAACGGTTCTACCTTGTTTTAGCACCTTGATTTGTTCAAAAGATTTTAAT TTTAATCCTAATGTTCCAAAATTCTACTCATTTGTCTAGTTCATTTGTGTCATCATGCGGAGCAAAATATAATGCTTTTT TTCTGATTTGAGGGTGCAGTTCTTTGGGCCAAGGACTTTTTACTAGCACTTTTGTTGGAGAAATAATGGTAGCCATTGTT GTTGCAACCCTTGGATTGGTTCTTTTTGCGTTGCTGATTGGTAATATGCAGGTAAAAGCAGTTAAATTATGAGTCTAATT TTCCATCATTCCATAAGGCATACAAATAGAACTTGAAATTTGCAGACATACCTACAATCATTAACAGTTCGCCTAGAAGA GTGGAGAGTAAAAAGAACTGATACAGAACAATGGATGCATCACAGGCAACTACCTCAAGAACTAAGAGAGTCTGTGCGTA AATATGATCAATATAAATGGGTAGCTACACGAGGAGTAGATGAAGAAACTATTCTTAAAGGACTTCCATTGGATCTCAGG AGAGACATCAAGCGCCACCTCTGTCTCGAATTAGTTAGAGGAGTAAGTCATGGGATTAAACTGTGTTCAAGCTAAGCTGA TACCATGCCATGAACAACTAACCCAAAAGCTTAAGTTGTTGGGTGAAAATAGATGAATGATTTTATATTATATTTCTAAC GAGCACTGCAACTGAAGTTTTCCATTAACTCATTGTTAACAGGTTCCACTGTTTGATCAAATGGATGAGAGGATGCTAGA CGCAATATGTGAAAGGCTAAAGCCTGCATTATGCACTGAGGGAACCTATCTTGTTCGTGAGGATGATCCTGTGAATGAAA TGCTCTTCATAATTCGAGGAAACCTAGACTCCTACACTACCAATGGAGGCCGTGCTGGATTCTTCAACTCATGTCGAATC GGCTCAGGTGATTTTTGCGGTGAAGAGCTATTAACATGGGCTTTGGACCCGAGACCGAGTGTGATACTCCCTTCTTCAAC TCGAACAGTTAAAGCCATCTCAGAAGTAGAGGCCTTTGCACTTATAGCTGAAGACCTGAAGTTTGTTGCATCACAATTCA GAAGGCTACACAGCAAACAACTAAGGCATAAATTCAGGTTTTACTCACACCAATGGAGAACTTGGGCTGCTTGTTTCATT CAAGCTGCATGGAGAAGGCACAAGAAAAGGAAAGGAGTTGCTGAGCTAAGGGCTAAGGAGAATGTGTTAGTTTCTGAGCC TGTAACACCAAAATCTGGTTCAGGTTTTGTTGGGTATCCAACAAGGATGGGTAGAAGCACTAGGAAAAGTGTCAATGTGC ATTCTGGGACAAATTCTGGAGTAGTCACTTCTTTTCAGAAGCCAGCAGAGCCAGATTTTTCTGTTGTTGAATAACAATTG TACATTTCCCTTTAGTCTCAGATTGAAACCTTTGAGTTGTGTCTCATTCTCTATACCACCAATAAAATGTTGACATGTTC ATTAAAAACCACCATGAAAGTTTGTAACAGCCCGACTCGTGTCTTTTTGAATTGGCACGGTAAGATTTCATTGATGGATC AGAAAATTTAGACCATTTTGGGGTCAAAAAATCTTGATCCCTTACTCTCTTGGACAAGTGTTTTCTTTTAGTATCATTTG TTCATCAAAATTTGAGATAGGAATTTCTGTAACACAATGAATAACTAGATGAGCTAAGATCTTAAATTTAAAATCTGTTG TCAAGGAAGTCCTTCATGTGGCTAATTTCCTTCATATCATTCCTTGATATATAGCTAGGAATTCATATGTGGGCTTTTGA GAAACACCATATAATATATATGATGTAACTGAAAAAATAAAACAGAAACAACATCATTGCAAGCAATAAAACAGAGATAC ACCATGATGCACCAAGAAAAAGAAGAATGATAACAGGGCCTCTAGGTGGCATTATGGCAAACCATTTTGGCATCAAACAT TCAACGGAAGTCTGACTCACCTATATTCCATCATCAGTCTCCACTTTGAAGTTTCAACACCATGCGAAGGCAACATTTAC AACGCCTTATTGGATAGCCCAACATTGCACTCACTCAATTTGGTGC
CDS sequence (LotjaGi3g1v0164800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGGGTTTTGCTAATCCAAGATCTGAAAGGCATGAAGATGATCCTGAAGTAGAAAAGTTCCCTTCAACTAGCGGTGA AAGTGGGATTAAGATTAAATACAACATTGATGGAACAAAAATACCTGAGCATAGTTCCAAAAGGGCTCAAAAGAGGGTAG CAGGGAAGACAGGGAAGTTCTTGAAAGCAAGAGTACTGTCAAGAGTGTTCTCAGAGGACTGCGAGAGAGTGAAGAGAAGG GTGTTAGATCCTCGCGGACAAACAATCCACCGTTGGAACAAGATTTTCTTAATAGCATCATTAGTGTCTTTGTTTGTAGA CCCGTTGTTCTTTTATTTGCCAGTGGTTCAAGATGAAGTGTGCATAGACATTGGAACAACTCTTGAAGTTATCCTTACAG TTGTTAGATCAGTTGGGGATGTGTTTTACATGATTCAGATTATGATGAAGTTTCGTACAGCTTATGTTGCTCCTTCTTCA CAAGTATTTGGGAGAGGAGAACTTGTTCTAGGCTATTCTAAGATTGCTGTTAGGTACCTCAGAAAGGGATTCTGGTTAGA CTGTGTAGCTGCATTGCCCCTTCCTCAGGTATTGATTTGGATTATTATCCCAGTTCTTAGGGGTTCAACCATGGCAAACA CGAAAAACGTGCTTCGCTTTTTCATCATTTTCCAATATGTTCCAAGACTTTATTTGATTTTCCCACTTTCATCACAAATT GTGAAAGCTACAGGGGTTGTGACAGAAACAGCTTGGGCAGGTGCTGCTTACAACCTGATGCTTTACATGCTGGCTAGCCA TGTTTTAGGAGCTTGCTGGTACCTTCTATCAATCGAACGACAAGAAGCATGTTGGAAAAGTGCGTGCAATCTGGAGAATT CATCTTGTCATTATGGATTCTTTGATTGCCATAGGGTTAATGATGCTATCAGGGTGTCCTGGTTTACAGCTAGTAATATC ACAGATTTATGTTCACCAAAAGCTGATTTTTATCCCTTTGGTATATATGCTGATGCTGTGACTTCTCAAGTTACATCCTC TGCATTCTTCAATAAGTACTTCTTTTGTCTCTGGTGGGGTCTAAGAAATCTGAGTTCTTTGGGCCAAGGACTTTTTACTA GCACTTTTGTTGGAGAAATAATGGTAGCCATTGTTGTTGCAACCCTTGGATTGGTTCTTTTTGCGTTGCTGATTGGTAAT ATGCAGACATACCTACAATCATTAACAGTTCGCCTAGAAGAGTGGAGAGTAAAAAGAACTGATACAGAACAATGGATGCA TCACAGGCAACTACCTCAAGAACTAAGAGAGTCTGTGCGTAAATATGATCAATATAAATGGGTAGCTACACGAGGAGTAG ATGAAGAAACTATTCTTAAAGGACTTCCATTGGATCTCAGGAGAGACATCAAGCGCCACCTCTGTCTCGAATTAGTTAGA GGAGTTCCACTGTTTGATCAAATGGATGAGAGGATGCTAGACGCAATATGTGAAAGGCTAAAGCCTGCATTATGCACTGA GGGAACCTATCTTGTTCGTGAGGATGATCCTGTGAATGAAATGCTCTTCATAATTCGAGGAAACCTAGACTCCTACACTA CCAATGGAGGCCGTGCTGGATTCTTCAACTCATGTCGAATCGGCTCAGGTGATTTTTGCGGTGAAGAGCTATTAACATGG GCTTTGGACCCGAGACCGAGTGTGATACTCCCTTCTTCAACTCGAACAGTTAAAGCCATCTCAGAAGTAGAGGCCTTTGC ACTTATAGCTGAAGACCTGAAGTTTGTTGCATCACAATTCAGAAGGCTACACAGCAAACAACTAAGGCATAAATTCAGGT TTTACTCACACCAATGGAGAACTTGGGCTGCTTGTTTCATTCAAGCTGCATGGAGAAGGCACAAGAAAAGGAAAGGAGTT GCTGAGCTAAGGGCTAAGGAGAATGTGTTAGTTTCTGAGCCTGTAACACCAAAATCTGGTTCAGGTTTTGTTGGGTATCC AACAAGGATGGGTAGAAGCACTAGGAAAAGTGTCAATGTGCATTCTGGGACAAATTCTGGAGTAGTCACTTCTTTTCAGA AGCCAGCAGAGCCAGATTTTTCTGTTGTTGAATAA
Protein sequence (LotjaGi3g1v0164800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMGFANPRSERHEDDPEVEKFPSTSGESGIKIKYNIDGTKIPEHSSKRAQKRVAGKTGKFLKARVLSRVFSEDCERVKRR VLDPRGQTIHRWNKIFLIASLVSLFVDPLFFYLPVVQDEVCIDIGTTLEVILTVVRSVGDVFYMIQIMMKFRTAYVAPSS QVFGRGELVLGYSKIAVRYLRKGFWLDCVAALPLPQVLIWIIIPVLRGSTMANTKNVLRFFIIFQYVPRLYLIFPLSSQI VKATGVVTETAWAGAAYNLMLYMLASHVLGACWYLLSIERQEACWKSACNLENSSCHYGFFDCHRVNDAIRVSWFTASNI TDLCSPKADFYPFGIYADAVTSQVTSSAFFNKYFFCLWWGLRNLSSLGQGLFTSTFVGEIMVAIVVATLGLVLFALLIGN MQTYLQSLTVRLEEWRVKRTDTEQWMHHRQLPQELRESVRKYDQYKWVATRGVDEETILKGLPLDLRRDIKRHLCLELVR GVPLFDQMDERMLDAICERLKPALCTEGTYLVREDDPVNEMLFIIRGNLDSYTTNGGRAGFFNSCRIGSGDFCGEELLTW ALDPRPSVILPSSTRTVKAISEVEAFALIAEDLKFVASQFRRLHSKQLRHKFRFYSHQWRTWAACFIQAAWRRHKKRKGV AELRAKENVLVSEPVTPKSGSGFVGYPTRMGRSTRKSVNVHSGTNSGVVTSFQKPAEPDFSVVE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
MobiDBLite | 1 | 30 | 30 | - | – | |
Phobius | 1 | 94 | 94 | - | – | |
MobiDBLite | 7 | 21 | 15 | - | – | |
PANTHER | 52 | 702 | 651 | 0.0 | – | |
PANTHER | 52 | 702 | 651 | 0.0 | – | |
SUPERFAMILY | 83 | 406 | 324 | 2.69E-30 | – | |
Pfam | 92 | 411 | 320 | 1.9E-28 | ||
Phobius | 95 | 113 | 19 | - | – | |
TMHMM | 95 | 117 | 23 | - | – | |
Phobius | 114 | 183 | 70 | - | – | |
PRINTS | 147 | 156 | 10 | 6.3E-6 | ||
TMHMM | 183 | 205 | 23 | - | – | |
Phobius | 184 | 205 | 22 | - | – | |
Phobius | 206 | 216 | 11 | - | – | |
Phobius | 217 | 234 | 18 | - | – | |
TMHMM | 217 | 239 | 23 | - | – | |
Phobius | 235 | 253 | 19 | - | – | |
TMHMM | 254 | 276 | 23 | - | – | |
Phobius | 254 | 276 | 23 | - | – | |
PRINTS | 264 | 274 | 11 | 6.3E-6 | ||
Phobius | 277 | 370 | 94 | - | – | |
PRINTS | 353 | 370 | 18 | 6.3E-6 | ||
Phobius | 371 | 398 | 28 | - | – | |
TMHMM | 376 | 398 | 23 | - | – | |
PRINTS | 397 | 406 | 10 | 6.3E-6 | ||
Phobius | 399 | 704 | 306 | - | – | |
Gene3D | 407 | 475 | 69 | 3.3E-14 | – | |
SUPERFAMILY | 414 | 610 | 197 | 1.19E-33 | ||
PRINTS | 447 | 454 | 8 | 6.3E-6 | ||
Gene3D | 482 | 602 | 121 | 3.6E-38 | ||
ProSiteProfiles | 484 | 581 | 98 | 12.349 | ||
SMART | 484 | 615 | 132 | 5.3E-11 | ||
CDD | 484 | 615 | 132 | 8.40712E-16 | ||
ProSiteProfiles | 620 | 648 | 29 | 6.668 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Ion channel activity | Enables the facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism. May be either selective (it enables passage of a specific ion only) or non-selective (it enables passage of two or more ions of same charge but different size). | ||
Molecular function | Voltage-gated potassium channel activity | Enables the transmembrane transfer of a potassium ion by a voltage-gated channel. A voltage-gated channel is a channel whose open state is dependent on the voltage across the membrane in which it is embedded. | ||
Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
Biological process | Ion transport | The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
Biological process | Potassium ion transport | The directed movement of potassium ions (K+) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi3g1v0164800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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