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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0164800 |
| Transcript ID | LotjaGi3g1v0164800.4 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cyclic nucleotide-gated channel; TAIR: AT2G28260.1 cyclic nucleotide-gated channel 15; Swiss-Prot: sp|A0A072VMJ3|CN15C_MEDTR Protein CNGC15c; TrEMBL-Plants: tr|A0A0S3SGM8|A0A0S3SGM8_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0164800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:22441777..22445340) extracted from Lotus japonicus Gifu genome v1.2.
AGAGTCTTCAACGTAACAATCAAATGCATTCTTTGAATAACTCAATAAATAAATTTCTTTTTATAGTTTATAAGCTTTTA ACAAGGAAATTAATGTTCTAGGCATGAAGATGATCCTGAAGTAGAAAAGTTCCCTTCAACTAGCGGTGAAAGTGGGATTA AGATTAAATACAACATTGATGGAACAAAAATACCTGAGCATAGTTCCAAAAGGGCTCAAAAGAGGGTAGCAGGGAAGACA GGGAAGTTCTTGAAAGCAAGAGTACTGTCAAGAGTGTTCTCAGAGGACTGCGAGAGAGTGAAGAGAAGGGTGTTAGATCC TCGCGGACAAACAATCCACCGTTGGAACAAGATTTTCTTAATAGCATCATTAGTGTCTTTGTTTGTAGACCCGTTGTTCT TTTATTTGCCAGTGGTTCAAGATGAAGTGTGCATAGACATTGGAACAACTCTTGAAGTTATCCTTACAGTTGTTAGATCA GTTGGGGATGTGTTTTACATGATTCAGATTATGATGAAGTTTCGTACAGCTTATGTTGCTCCTTCTTCACAAGTATTTGG GAGAGGAGAACTTGTTCTAGGCTATTCTAAGATTGCTGTTAGGTACCTCAGAAAGGGATTCTGGTTAGACTGTGTAGCTG CATTGCCCCTTCCTCAGGTACCTCACTCTAAAATCTTCTTTAGTTTAATCAATATGATGATACTTTTACGAATCAAGATC TTCTGTCCTCGTTTGGTGTCCCCTTATATGTCCCACTAATAAAATTGTGTTATGTCAATTAAAAAATGGTATGAATATGA CGGTTATTACCTTATTACATGTGTGTTGGTGGGTCAGAGAAAGGGTCATCAAATTGGGATAGAAGATTTCAACCCTTAAG GGGCTGAATAATGAATAGCTCTTCTGTTATGTTTGTTTGTTCCAGGTATTGATTTGGATTATTATCCCAGTTCTTAGGGG TTCAACCATGGCAAACACGAAAAACGTGCTTCGCTTTTTCATCATTTTCCAATATGTTCCAAGACTTTATTTGATTTTCC CACTTTCATCACAAATTGTGAAAGCTACAGGGGTTGTGACAGAAACAGCTTGGGCAGGTGCTGCTTACAACCTGATGCTT TACATGCTGGCTAGCCATGTAAGTAGAAATACTGCATTTTCTTATTGCTCAAGCAGCTGAAGCATTTTCCTTTTCATCAT GTTTATCAAGGGAATTTAGTCTTGAAGATAAAACTTAAAAGTGTTTGGTGGAGACCAAATTTTATTTCCTCACAAGCTAA ACTAGAATGTGGTTGAAGTTTTTGCCTAATGTTAACATTATATGACTTAAAAGAGTTAAAAGTACTCCTTCAGTCACATC TTGAGATTTCATCCACCAAGTAAACACTCCATCTACTCTTAGGATGAAAACATGTATTAGTCTTGCAAAAATAAATGTGT ATTTGGATTTCTGTTGAACTCAATGCTGATCTACGCTAAAGTCAGAGTGACAAAATCTTGTTTCACCATTTGTGTGTTGG GATATGTGCTTCTCAAGTGGGAAACCAAACACACTAAGTGCATGTTTCGAAACTCTTGTACAATTGATTATGAAGTCATA ATCAATTCCGGGGAGAAACTTTTGTGAGTAGCTTCTAGATTTCAGAATTGAATATGATGAAAGAAAAGCTGATCCAATTT CTGAAGCGACTGTTATGGATGTTTTAATTCTGTTGGCAAACTATGATTTATATTATATACAATATTGATAATGCAGACAA ATTTTACAAAAGAATAGTACAGAACAATTGAAACACCAAATTTTATTTCTTTTGTTTTGTTTTTTCTAATGGGAATTGGG GAATGTTGTGAATAGGTTTTAGGAGCTTGCTGGTACCTTCTATCAATCGAACGACAAGAAGCATGTTGGAAAAGTGCGTG CAATCTGGAGAATTCATCTTGTCATTATGGATTCTTTGATTGCCATAGGGTTAATGATGCTATCAGGGTGTCCTGGTTTA CAGCTAGTAATATCACAGATTTATGTTCACCAAAAGCTGATTTTTATCCCTTTGGTATATATGCTGATGCTGTGACTTCT CAAGTTACATCCTCTGCATTCTTCAATAAGTACTTCTTTTGTCTCTGGTGGGGTCTAAGAAATCTGAGGTAAGTTTCATG AAACGGTTCTACCTTGTTTTAGCACCTTGATTTGTTCAAAAGATTTTAATTTTAATCCTAATGTTCCAAAATTCTACTCA TTTGTCTAGTTCATTTGTGTCATCATGCGGAGCAAAATATAATGCTTTTTTTCTGATTTGAGGGTGCAGTTCTTTGGGCC AAGGACTTTTTACTAGCACTTTTGTTGGAGAAATAATGGTAGCCATTGTTGTTGCAACCCTTGGATTGGTTCTTTTTGCG TTGCTGATTGGTAATATGCAGGTAAAAGCAGTTAAATTATGAGTCTAATTTTCCATCATTCCATAAGGCATACAAATAGA ACTTGAAATTTGCAGACATACCTACAATCATTAACAGTTCGCCTAGAAGAGTGGAGAGTAAAAAGAACTGATACAGAACA ATGGATGCATCACAGGCAACTACCTCAAGAACTAAGAGAGTCTGTGCGTAAATATGATCAATATAAATGGGTAGCTACAC GAGGAGTAGATGAAGAAACTATTCTTAAAGGACTTCCATTGGATCTCAGGAGAGACATCAAGCGCCACCTCTGTCTCGAA TTAGTTAGAGGAGTAAGTCATGGGATTAAACTGTGTTCAAGCTAAGCTGATACCATGCCATGAACAACTAACCCAAAAGC TTAAGTTGTTGGGTGAAAATAGATGAATGATTTTATATTATATTTCTAACGAGCACTGCAACTGAAGTTTTCCATTAACT CATTGTTAACAGGTTCCACTGTTTGATCAAATGGATGAGAGGATGCTAGACGCAATATGTGAAAGGCTAAAGCCTGCATT ATGCACTGAGGGAACCTATCTTGTTCGTGAGGATGATCCTGTGAATGAAATGCTCTTCATAATTCGAGGAAACCTAGACT CCTACACTACCAATGGAGGCCGTGCTGGATTCTTCAACTCATGTCGAATCGGCTCAGGTGATTTTTGCGGTGAAGAGCTA TTAACATGGGCTTTGGACCCGAGACCGAGTGTGATACTCCCTTCTTCAACTCGAACAGTTAAAGCCATCTCAGAAGTAGA GGCCTTTGCACTTATAGCTGAAGACCTGAAGTTTGTTGCATCACAATTCAGAAGGCTACACAGCAAACAACTAAGGCATA AATTCAGGTTTTACTCACACCAATGGAGAACTTGGGCTGCTTGTTTCATTCAAGCTGCATGGAGAAGGCACAAGAAAAGG AAAGGAGTTGCTGAGCTAAGGGCTAAGGAGAATGTGTTAGTTTCTGAGCCTGTAACACCAAAATCTGGTTCAGGTTTTGT TGGGTATCCAACAAGGATGGGTAGAAGCACTAGGAAAAGTGTCAATGTGCATTCTGGGACAAATTCTGGAGTAGTCACTT CTTTTCAGAAGCCAGCAGAGCCAGATTTTTCTGTTGTTGAATAA
CDS sequence (LotjaGi3g1v0164800.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATTCAGATTATGATGAAGTTTCGTACAGCTTATGTTGCTCCTTCTTCACAAGTATTTGGGAGAGGAGAACTTGTTCT AGGCTATTCTAAGATTGCTGTTAGGTACCTCAGAAAGGGATTCTGGTTAGACTGTGTAGCTGCATTGCCCCTTCCTCAGG TATTGATTTGGATTATTATCCCAGTTCTTAGGGGTTCAACCATGGCAAACACGAAAAACGTGCTTCGCTTTTTCATCATT TTCCAATATGTTCCAAGACTTTATTTGATTTTCCCACTTTCATCACAAATTGTGAAAGCTACAGGGGTTGTGACAGAAAC AGCTTGGGCAGGTGCTGCTTACAACCTGATGCTTTACATGCTGGCTAGCCATGTTTTAGGAGCTTGCTGGTACCTTCTAT CAATCGAACGACAAGAAGCATGTTGGAAAAGTGCGTGCAATCTGGAGAATTCATCTTGTCATTATGGATTCTTTGATTGC CATAGGGTTAATGATGCTATCAGGGTGTCCTGGTTTACAGCTAGTAATATCACAGATTTATGTTCACCAAAAGCTGATTT TTATCCCTTTGGTATATATGCTGATGCTGTGACTTCTCAAGTTACATCCTCTGCATTCTTCAATAAGTACTTCTTTTGTC TCTGGTGGGGTCTAAGAAATCTGAGTTCTTTGGGCCAAGGACTTTTTACTAGCACTTTTGTTGGAGAAATAATGGTAGCC ATTGTTGTTGCAACCCTTGGATTGGTTCTTTTTGCGTTGCTGATTGGTAATATGCAGACATACCTACAATCATTAACAGT TCGCCTAGAAGAGTGGAGAGTAAAAAGAACTGATACAGAACAATGGATGCATCACAGGCAACTACCTCAAGAACTAAGAG AGTCTGTGCGTAAATATGATCAATATAAATGGGTAGCTACACGAGGAGTAGATGAAGAAACTATTCTTAAAGGACTTCCA TTGGATCTCAGGAGAGACATCAAGCGCCACCTCTGTCTCGAATTAGTTAGAGGAGTTCCACTGTTTGATCAAATGGATGA GAGGATGCTAGACGCAATATGTGAAAGGCTAAAGCCTGCATTATGCACTGAGGGAACCTATCTTGTTCGTGAGGATGATC CTGTGAATGAAATGCTCTTCATAATTCGAGGAAACCTAGACTCCTACACTACCAATGGAGGCCGTGCTGGATTCTTCAAC TCATGTCGAATCGGCTCAGGTGATTTTTGCGGTGAAGAGCTATTAACATGGGCTTTGGACCCGAGACCGAGTGTGATACT CCCTTCTTCAACTCGAACAGTTAAAGCCATCTCAGAAGTAGAGGCCTTTGCACTTATAGCTGAAGACCTGAAGTTTGTTG CATCACAATTCAGAAGGCTACACAGCAAACAACTAAGGCATAAATTCAGGTTTTACTCACACCAATGGAGAACTTGGGCT GCTTGTTTCATTCAAGCTGCATGGAGAAGGCACAAGAAAAGGAAAGGAGTTGCTGAGCTAAGGGCTAAGGAGAATGTGTT AGTTTCTGAGCCTGTAACACCAAAATCTGGTTCAGGTTTTGTTGGGTATCCAACAAGGATGGGTAGAAGCACTAGGAAAA GTGTCAATGTGCATTCTGGGACAAATTCTGGAGTAGTCACTTCTTTTCAGAAGCCAGCAGAGCCAGATTTTTCTGTTGTT GAATAA
Protein sequence (LotjaGi3g1v0164800.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIQIMMKFRTAYVAPSSQVFGRGELVLGYSKIAVRYLRKGFWLDCVAALPLPQVLIWIIIPVLRGSTMANTKNVLRFFII FQYVPRLYLIFPLSSQIVKATGVVTETAWAGAAYNLMLYMLASHVLGACWYLLSIERQEACWKSACNLENSSCHYGFFDC HRVNDAIRVSWFTASNITDLCSPKADFYPFGIYADAVTSQVTSSAFFNKYFFCLWWGLRNLSSLGQGLFTSTFVGEIMVA IVVATLGLVLFALLIGNMQTYLQSLTVRLEEWRVKRTDTEQWMHHRQLPQELRESVRKYDQYKWVATRGVDEETILKGLP LDLRRDIKRHLCLELVRGVPLFDQMDERMLDAICERLKPALCTEGTYLVREDDPVNEMLFIIRGNLDSYTTNGGRAGFFN SCRIGSGDFCGEELLTWALDPRPSVILPSSTRTVKAISEVEAFALIAEDLKFVASQFRRLHSKQLRHKFRFYSHQWRTWA ACFIQAAWRRHKKRKGVAELRAKENVLVSEPVTPKSGSGFVGYPTRMGRSTRKSVNVHSGTNSGVVTSFQKPAEPDFSVV E
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 559 | 559 | 1.2E-297 | – | |
| PANTHER | 1 | 559 | 559 | 1.2E-297 | – | |
| Phobius | 1 | 40 | 40 | - | – | |
| SUPERFAMILY | 2 | 263 | 262 | 1.7E-23 | – | |
| Pfam | 3 | 268 | 266 | 2.2E-23 | ||
| PRINTS | 4 | 13 | 10 | 2.3E-6 | ||
| TMHMM | 41 | 63 | 23 | - | – | |
| Phobius | 41 | 62 | 22 | - | – | |
| Phobius | 63 | 73 | 11 | - | – | |
| Phobius | 74 | 91 | 18 | - | – | |
| Phobius | 92 | 110 | 19 | - | – | |
| TMHMM | 111 | 133 | 23 | - | – | |
| Phobius | 111 | 133 | 23 | - | – | |
| PRINTS | 121 | 131 | 11 | 2.3E-6 | ||
| Phobius | 134 | 227 | 94 | - | – | |
| PRINTS | 210 | 227 | 18 | 2.3E-6 | ||
| Phobius | 228 | 255 | 28 | - | – | |
| TMHMM | 233 | 255 | 23 | - | – | |
| PRINTS | 254 | 263 | 10 | 2.3E-6 | ||
| Phobius | 256 | 561 | 306 | - | – | |
| Gene3D | 264 | 332 | 69 | 2.4E-14 | – | |
| SUPERFAMILY | 271 | 467 | 197 | 7.6E-34 | ||
| PRINTS | 304 | 311 | 8 | 2.3E-6 | ||
| Gene3D | 339 | 459 | 121 | 2.5E-38 | ||
| SMART | 341 | 472 | 132 | 5.3E-11 | ||
| ProSiteProfiles | 341 | 438 | 98 | 12.349 | ||
| CDD | 341 | 472 | 132 | 4.79268E-16 | ||
| ProSiteProfiles | 477 | 505 | 29 | 6.668 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Ion channel activity | Enables the facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism. May be either selective (it enables passage of a specific ion only) or non-selective (it enables passage of two or more ions of same charge but different size). | ||
| Molecular function | Voltage-gated potassium channel activity | Enables the transmembrane transfer of a potassium ion by a voltage-gated channel. A voltage-gated channel is a channel whose open state is dependent on the voltage across the membrane in which it is embedded. | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | Ion transport | The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Biological process | Potassium ion transport | The directed movement of potassium ions (K+) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi3g1v0164800.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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