Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0164800 |
| Transcript ID | LotjaGi3g1v0164800.6 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cyclic nucleotide-gated channel; TAIR: AT2G28260.1 cyclic nucleotide-gated channel 15; Swiss-Prot: sp|A0A072VMJ3|CN15C_MEDTR Protein CNGC15c; TrEMBL-Plants: tr|K7M362|K7M362_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0164800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:22441777..22445360) extracted from Lotus japonicus Gifu genome v1.2.
TCTACTTCTACTACTGCTTAAGAGTCTTCAACGTAACAATCAAATGCATTCTTTGAATAACTCAATAAATAAATTTCTTT TTATAGTTTATAAGCTTTTAACAAGGAAATTAATGTTCTAGGCATGAAGATGATCCTGAAGTAGAAAAGTTCCCTTCAAC TAGCGGTGAAAGTGGGATTAAGATTAAATACAACATTGATGGAACAAAAATACCTGAGCATAGTTCCAAAAGGGCTCAAA AGAGGGTAGCAGGGAAGACAGGGAAGTTCTTGAAAGCAAGAGTACTGTCAAGAGTGTTCTCAGAGGACTGCGAGAGAGTG AAGAGAAGGGTGTTAGATCCTCGCGGACAAACAATCCACCGTTGGAACAAGATTTTCTTAATAGCATCATTAGTGTCTTT GTTTGTAGACCCGTTGTTCTTTTATTTGCCAGTGGTTCAAGATGAAGTGTGCATAGACATTGGAACAACTCTTGAAGTTA TCCTTACAGTTGTTAGATCAGTTGGGGATGTGTTTTACATGATTCAGATTATGATGAAGTTTCGTACAGCTTATGTTGCT CCTTCTTCACAAGTATTTGGGAGAGGAGAACTTGTTCTAGGCTATTCTAAGATTGCTGTTAGGTACCTCAGAAAGGGATT CTGGTTAGACTGTGTAGCTGCATTGCCCCTTCCTCAGGTACCTCACTCTAAAATCTTCTTTAGTTTAATCAATATGATGA TACTTTTACGAATCAAGATCTTCTGTCCTCGTTTGGTGTCCCCTTATATGTCCCACTAATAAAATTGTGTTATGTCAATT AAAAAATGGTATGAATATGACGGTTATTACCTTATTACATGTGTGTTGGTGGGTCAGAGAAAGGGTCATCAAATTGGGAT AGAAGATTTCAACCCTTAAGGGGCTGAATAATGAATAGCTCTTCTGTTATGTTTGTTTGTTCCAGGTATTGATTTGGATT ATTATCCCAGTTCTTAGGGGTTCAACCATGGCAAACACGAAAAACGTGCTTCGCTTTTTCATCATTTTCCAATATGTTCC AAGACTTTATTTGATTTTCCCACTTTCATCACAAATTGTGAAAGCTACAGGGGTTGTGACAGAAACAGCTTGGGCAGGTG CTGCTTACAACCTGATGCTTTACATGCTGGCTAGCCATGTAAGTAGAAATACTGCATTTTCTTATTGCTCAAGCAGCTGA AGCATTTTCCTTTTCATCATGTTTATCAAGGGAATTTAGTCTTGAAGATAAAACTTAAAAGTGTTTGGTGGAGACCAAAT TTTATTTCCTCACAAGCTAAACTAGAATGTGGTTGAAGTTTTTGCCTAATGTTAACATTATATGACTTAAAAGAGTTAAA AGTACTCCTTCAGTCACATCTTGAGATTTCATCCACCAAGTAAACACTCCATCTACTCTTAGGATGAAAACATGTATTAG TCTTGCAAAAATAAATGTGTATTTGGATTTCTGTTGAACTCAATGCTGATCTACGCTAAAGTCAGAGTGACAAAATCTTG TTTCACCATTTGTGTGTTGGGATATGTGCTTCTCAAGTGGGAAACCAAACACACTAAGTGCATGTTTCGAAACTCTTGTA CAATTGATTATGAAGTCATAATCAATTCCGGGGAGAAACTTTTGTGAGTAGCTTCTAGATTTCAGAATTGAATATGATGA AAGAAAAGCTGATCCAATTTCTGAAGCGACTGTTATGGATGTTTTAATTCTGTTGGCAAACTATGATTTATATTATATAC AATATTGATAATGCAGACAAATTTTACAAAAGAATAGTACAGAACAATTGAAACACCAAATTTTATTTCTTTTGTTTTGT TTTTTCTAATGGGAATTGGGGAATGTTGTGAATAGGTTTTAGGAGCTTGCTGGTACCTTCTATCAATCGAACGACAAGAA GCATGTTGGAAAAGTGCGTGCAATCTGGAGAATTCATCTTGTCATTATGGATTCTTTGATTGCCATAGGGTTAATGATGC TATCAGGGTGTCCTGGTTTACAGCTAGTAATATCACAGATTTATGTTCACCAAAAGCTGATTTTTATCCCTTTGGTATAT ATGCTGATGCTGTGACTTCTCAAGTTACATCCTCTGCATTCTTCAATAAGTACTTCTTTTGTCTCTGGTGGGGTCTAAGA AATCTGAGGTAAGTTTCATGAAACGGTTCTACCTTGTTTTAGCACCTTGATTTGTTCAAAAGATTTTAATTTTAATCCTA ATGTTCCAAAATTCTACTCATTTGTCTAGTTCATTTGTGTCATCATGCGGAGCAAAATATAATGCTTTTTTTCTGATTTG AGGGTGCAGTTCTTTGGGCCAAGGACTTTTTACTAGCACTTTTGTTGGAGAAATAATGGTAGCCATTGTTGTTGCAACCC TTGGATTGGTTCTTTTTGCGTTGCTGATTGGTAATATGCAGGTAAAAGCAGTTAAATTATGAGTCTAATTTTCCATCATT CCATAAGGCATACAAATAGAACTTGAAATTTGCAGACATACCTACAATCATTAACAGTTCGCCTAGAAGAGTGGAGAGTA AAAAGAACTGATACAGAACAATGGATGCATCACAGGCAACTACCTCAAGAACTAAGAGAGTCTGTGCGTAAATATGATCA ATATAAATGGGTAGCTACACGAGGAGTAGATGAAGAAACTATTCTTAAAGGACTTCCATTGGATCTCAGGAGAGACATCA AGCGCCACCTCTGTCTCGAATTAGTTAGAGGAGTAAGTCATGGGATTAAACTGTGTTCAAGCTAAGCTGATACCATGCCA TGAACAACTAACCCAAAAGCTTAAGTTGTTGGGTGAAAATAGATGAATGATTTTATATTATATTTCTAACGAGCACTGCA ACTGAAGTTTTCCATTAACTCATTGTTAACAGGTTCCACTGTTTGATCAAATGGATGAGAGGATGCTAGACGCAATATGT GAAAGGCTAAAGCCTGCATTATGCACTGAGGGAACCTATCTTGTTCGTGAGGATGATCCTGTGAATGAAATGCTCTTCAT AATTCGAGGAAACCTAGACTCCTACACTACCAATGGAGGCCGTGCTGGATTCTTCAACTCATGTCGAATCGGCTCAGGTG ATTTTTGCGGTGAAGAGCTATTAACATGGGCTTTGGACCCGAGACCGAGTGTGATACTCCCTTCTTCAACTCGAACAGTT AAAGCCATCTCAGAAGTAGAGGCCTTTGCACTTATAGCTGAAGACCTGAAGTTTGTTGCATCACAATTCAGAAGGCTACA CAGCAAACAACTAAGGCATAAATTCAGGTTTTACTCACACCAATGGAGAACTTGGGCTGCTTGTTTCATTCAAGCTGCAT GGAGAAGGCACAAGAAAAGGAAAGGAGTTGCTGAGCTAAGGGCTAAGGAGAATGTGTTAGTTTCTGAGCCTGTAACACCA AAATCTGGTTCAGGTTTTGTTGGGTATCCAACAAGGATGGGTAGAAGCACTAGGAAAAGTGTCAATGTGCATTCTGGGAC AAATTCTGGAGTAGTCACTTCTTTTCAGAAGCCAGCAGAGCCAGATTTTTCTGTTGTTGAATAA
CDS sequence (LotjaGi3g1v0164800.6) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATTCAGATTATGATGAAGTTTCGTACAGCTTATGTTGCTCCTTCTTCACAAGTATTTGGGAGAGGAGAACTTGTTCT AGGCTATTCTAAGATTGCTGTTAGGTACCTCAGAAAGGGATTCTGGTTAGACTGTGTAGCTGCATTGCCCCTTCCTCAGG TATTGATTTGGATTATTATCCCAGTTCTTAGGGGTTCAACCATGGCAAACACGAAAAACGTGCTTCGCTTTTTCATCATT TTCCAATATGTTCCAAGACTTTATTTGATTTTCCCACTTTCATCACAAATTGTGAAAGCTACAGGGGTTGTGACAGAAAC AGCTTGGGCAGGTGCTGCTTACAACCTGATGCTTTACATGCTGGCTAGCCATGTTTTAGGAGCTTGCTGGTACCTTCTAT CAATCGAACGACAAGAAGCATGTTGGAAAAGTGCGTGCAATCTGGAGAATTCATCTTGTCATTATGGATTCTTTGATTGC CATAGGGTTAATGATGCTATCAGGGTGTCCTGGTTTACAGCTAGTAATATCACAGATTTATGTTCACCAAAAGCTGATTT TTATCCCTTTGGTATATATGCTGATGCTGTGACTTCTCAAGTTACATCCTCTGCATTCTTCAATAAGTACTTCTTTTGTC TCTGGTGGGGTCTAAGAAATCTGAGTTCTTTGGGCCAAGGACTTTTTACTAGCACTTTTGTTGGAGAAATAATGGTAGCC ATTGTTGTTGCAACCCTTGGATTGGTTCTTTTTGCGTTGCTGATTGGTAATATGCAGACATACCTACAATCATTAACAGT TCGCCTAGAAGAGTGGAGAGTAAAAAGAACTGATACAGAACAATGGATGCATCACAGGCAACTACCTCAAGAACTAAGAG AGTCTGTGCGTAAATATGATCAATATAAATGGGTAGCTACACGAGGAGTAGATGAAGAAACTATTCTTAAAGGACTTCCA TTGGATCTCAGGAGAGACATCAAGCGCCACCTCTGTCTCGAATTAGTTAGAGGAGTTCCACTGTTTGATCAAATGGATGA GAGGATGCTAGACGCAATATGTGAAAGGCTAAAGCCTGCATTATGCACTGAGGGAACCTATCTTGTTCGTGAGGATGATC CTGTGAATGAAATGCTCTTCATAATTCGAGGAAACCTAGACTCCTACACTACCAATGGAGGCCGTGCTGGATTCTTCAAC TCATGTCGAATCGGCTCAGGTGATTTTTGCGGTGAAGAGCTATTAACATGGGCTTTGGACCCGAGACCGAGTGTGATACT CCCTTCTTCAACTCGAACAGTTAAAGCCATCTCAGAAGTAGAGGCCTTTGCACTTATAGCTGAAGACCTGAAGTTTGTTG CATCACAATTCAGAAGGCTACACAGCAAACAACTAAGGCATAAATTCAGGTTTTACTCACACCAATGGAGAACTTGGGCT GCTTGTTTCATTCAAGCTGCATGGAGAAGGCACAAGAAAAGGAAAGGAGTTGCTGAGCTAAGGGCTAAGGAGAATGTGTT AGTTTCTGAGCCTGTAACACCAAATGGGACAAATTCTGGAGTAGTCACTTCTTTTCAGAAGCCAGCAGAGCCAGATTTTT CTGTTGTTGAATAA
Protein sequence (LotjaGi3g1v0164800.6) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIQIMMKFRTAYVAPSSQVFGRGELVLGYSKIAVRYLRKGFWLDCVAALPLPQVLIWIIIPVLRGSTMANTKNVLRFFII FQYVPRLYLIFPLSSQIVKATGVVTETAWAGAAYNLMLYMLASHVLGACWYLLSIERQEACWKSACNLENSSCHYGFFDC HRVNDAIRVSWFTASNITDLCSPKADFYPFGIYADAVTSQVTSSAFFNKYFFCLWWGLRNLSSLGQGLFTSTFVGEIMVA IVVATLGLVLFALLIGNMQTYLQSLTVRLEEWRVKRTDTEQWMHHRQLPQELRESVRKYDQYKWVATRGVDEETILKGLP LDLRRDIKRHLCLELVRGVPLFDQMDERMLDAICERLKPALCTEGTYLVREDDPVNEMLFIIRGNLDSYTTNGGRAGFFN SCRIGSGDFCGEELLTWALDPRPSVILPSSTRTVKAISEVEAFALIAEDLKFVASQFRRLHSKQLRHKFRFYSHQWRTWA ACFIQAAWRRHKKRKGVAELRAKENVLVSEPVTPNGTNSGVVTSFQKPAEPDFSVVE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 510 | 510 | 2.3E-292 | – | |
| PANTHER | 1 | 510 | 510 | 2.3E-292 | – | |
| Phobius | 1 | 40 | 40 | - | – | |
| SUPERFAMILY | 2 | 263 | 262 | 1.57E-23 | – | |
| Pfam | 3 | 268 | 266 | 2.0E-23 | ||
| PRINTS | 4 | 13 | 10 | 1.9E-6 | ||
| Phobius | 41 | 62 | 22 | - | – | |
| TMHMM | 41 | 63 | 23 | - | – | |
| Phobius | 63 | 73 | 11 | - | – | |
| Phobius | 74 | 91 | 18 | - | – | |
| Phobius | 92 | 111 | 20 | - | – | |
| TMHMM | 111 | 133 | 23 | - | – | |
| Phobius | 112 | 133 | 22 | - | – | |
| PRINTS | 121 | 131 | 11 | 1.9E-6 | ||
| Phobius | 134 | 232 | 99 | - | – | |
| PRINTS | 210 | 227 | 18 | 1.9E-6 | ||
| TMHMM | 233 | 255 | 23 | - | – | |
| Phobius | 233 | 255 | 23 | - | – | |
| PRINTS | 254 | 263 | 10 | 1.9E-6 | ||
| Phobius | 256 | 537 | 282 | - | – | |
| Gene3D | 264 | 332 | 69 | 2.3E-14 | – | |
| SUPERFAMILY | 271 | 467 | 197 | 6.91E-34 | ||
| PRINTS | 304 | 311 | 8 | 1.9E-6 | ||
| Gene3D | 339 | 459 | 121 | 2.3E-38 | ||
| SMART | 341 | 472 | 132 | 5.3E-11 | ||
| CDD | 341 | 472 | 132 | 6.22253E-16 | ||
| ProSiteProfiles | 341 | 438 | 98 | 12.349 | ||
| ProSiteProfiles | 477 | 505 | 29 | 6.668 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Ion channel activity | Enables the facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism. May be either selective (it enables passage of a specific ion only) or non-selective (it enables passage of two or more ions of same charge but different size). | ||
| Molecular function | Voltage-gated potassium channel activity | Enables the transmembrane transfer of a potassium ion by a voltage-gated channel. A voltage-gated channel is a channel whose open state is dependent on the voltage across the membrane in which it is embedded. | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | Ion transport | The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Biological process | Potassium ion transport | The directed movement of potassium ions (K+) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi3g1v0164800.6, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…