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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0178700 |
| Transcript ID | LotjaGi3g1v0178700.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | rRNA-processing protein FCF1 like; TAIR: AT2G46230.1 PIN domain-like family protein; Swiss-Prot: sp|Q32PD0|FCF1_BOVIN rRNA-processing protein FCF1 homolog; TrEMBL-Plants: tr|I3T9S6|I3T9S6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0178700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:24909353..24916744) extracted from Lotus japonicus Gifu genome v1.2.
GCTACCAAAAAAAAATTGGGTGAATAAAACATTAAACCCTAATATCACCCGCTTTTTCCTCTTTCACTCTCTGTTGCCGC CTTCACCTCCGTCTCTCTGGTTCGCTCGCTACCTGTGCGGTTCGTCTCCGGTCGCTATTCTCCCACCACCGCAACATCAT CTCCATTCTCCCTCCCACAGTCGGTGAGTTCACCTTAATTTTTTTTCTTTCACTTCACTGATTATATGAGATCCTGTTGC ATCATTGAGTGGTTTCGAACTCGGTATATTTGTTGTTGCTTGATTGAGCTGTATATTTATGGTAATCGTCTTATGTATCA AACAACTTAATTTGTTGCTGTTAGTCCAAGCTATTGATGTAGGAAAAATCCCACTAAACCAGCCTTCAATGCTTAGAATA TGTAGTTAAATCATTGAATAATATGCTGTTAGTTCAAGCTATATGAGCAGGTTGCCACTGAGTAATCTTCGGTTGCGACT TGCATGAATATGTAGTTAAAACTTTGAATGCTGGTTACCTTTATTAGTACATTGGAATGGCCTGATTATGACAATAACAT ACTGAAATGAAACGGAGGAGGAATAAATGTATTCCACATATTCGAGATGCTTATGGGTTTAAACTTATTGGATCAAGCTA AGTATTTAAAAAAAAAATTTCGGGCGTGATGGTGGCTGAGTGGTGAAGAGAGAGGATCAGAGGAGGGCTTGGCGGTGAGG GAGGGAGAGAGGAGGGTGATATCGTAATCGTACTTCAAAAGTGTGTTAAATCTAAGCCATTACTTTTTTTTAATTAACTG TCTCGTATGAGTCGCTTTTTAGTGACACTCGTATTAGACAACACCTTCTATTAGACAACACATGTTGCTGCAATGCGCTT AAATTCTATTGGTAGTTTCTTTAGCTTCCAGTTTTGAGTAAGGTGTTGCATGTGAAGTAGGCTATCGATACTTTGTTGAT ATGGTACATTTCTTAAGAATAGGCTATCAATACATAGGCTACCGGAAATTTGTATGGTAAATTGCTTAGGTCAGCTCATG CTTCACTGTCCATGATGGCGATACATTATGCTTAACTCTGTTCAGTTAGATAGTTATATCATTCAATGACTTCTTTTTTA TTTTGTATTATGTTTTGTTCAAGTCTCATTGATTTCTTCTTTAGTTTATGAGTTCAAGCCAAATTAAATGTCGTAAAGTT TGTAGGATTGACATAACTGAGGCTTCTACTTTAGAACTCGTGGGACATAATTTACATATTTTTTTATTGTTCTAGCACCA TTTATTTATAGTTATATTATTCTTTATAGGAATCCACAATCCTTCTGATTGGATGTACCCTGTGAAAATTAACATTTTCA AGAATGAGACATGTAGCTTCTCTTTTTAGAGTAAAAATAAGTTGATTTAGTAATATTTCTGATTGCATGTCCTCTTGAAC CATTCCACTTGCTTAGCCGAAGTTTTTTCTTCTTGTGTTGCTGTTTGTTTCTTGCTTTTAATTCCTTGGTTCTTCAATTT TGTCCTCCATCTCTTGTATTTTGAGTTTTTCATCTCCAATCAGTGTTTTGAGTACTGAATTGCAGTGTTATCCTACAGGG GGTACTGTAGTGGCAGTGCTAGAGTTTTTGCAGGGACAAGCTCTTCTTACCCACAATGGGTAAAGCTAAGAAGGGACCCA AATTTGCGGTTAGGAAGAAGCTTGTTACTTCCAAAGCAATTAAAAAGTGAGTTTTTATATGTTTGTTCCTCCAGTATGCC TTTTTTGTTCTATTTTCATTCCCAAATTTGCGGTTAGGAAGAAGCTTGTTACTTCCAAAGCAATTAAAAAGTGAGTTTTT ATATGTTTGTTCCTCCAGTATGCCTTTTTTGTTCTATTTTCATTCCCTGAATTTCTGTCACATTCAGCTATAAAGAAGAA GTTTTGAACCCAGAAAAGAAGAACCTTCTAAAGGAAAAGTTACCCAGAAACATGTAAGCCTTCATTCTCACCCTTTTCTT TCACTTCTTATTCCTCTTGAATATATCAGCTTCCCGAATCGCTTTTTTTGTTTTAATAATCTATGGTTTAAACTTCCATT GTTTAGTCCAAGTTATTCTTCAGCTCTTTTCTTTCAATACAATACTGCATTGGGACCCCCTTATCGTGTTCTGGTGGATA CCAACTTCATCAATTTCTCTATCCAGAATAAAGTAAGTTTTTGTTTTCCTCTTTTAACTAAGTTAATGAAGTATTATATG ATTTTACCTGGTTCTGCATGCCTAGTAGTTTCTCATGGAGTTTGTTTGTTTAAAGTTAAACTCATAATATATGATGCTGA TGATGTTTGTGACTGTATTTTGATGATATCGATATGGTTCTTATGACTTATGAGCTTTTCCTCAATGGATTGAAATGATA AATCGAAAGTTCAGTCTTCACTACAAATTTGAAACAATTAAAGCATTATAGTGTGTAGTTGATCTCATTAGAATCATACG AGTGACATCCTCTTTTTTTGGTTGGTTGCTCACATGATTCTTTGGCCATGTTTATGCAGTTGGATCTGGAGAAGGGAATG ATGGACTGCTTATATGCGAAATGTGAGTTTAAACAGATGGTTTCATGTGTTGGTTTATGAATTTCTTGTTTAATTTTAGT TGAATGTTAGGATTCAGATAGGAACCTGTTATTTTATTAGAAAGAATAGGGAAAATCTTCCCTGCTTACAACAATGCAGA TCCTGAAGGGTTTGCCCCTCCTTACCCTTACGTCTCAATCTTGCAACTCTAGTAGGTTCCTGCACTGACTGAGGTTTGTG TAACCTCACTGATTTCTCCAAGGGACATAAAAAATACTTAAAGCCATAGAATCTTTGAAGAAGTTCTTGCTAGTAATTCA TCAAAACCCTCCAAACGTTCCTTTAAAGTACATGTTCGTTTCACACTTAATAGCTCTCATAGTAGTCAATCCCGGATAGC GGCGGACCCCAAAAGTGGGATAGCGGGATGGCCGCTATTTTGATTTTTCATATATAATTTTATATAATTAATAGTAGAAA ATTAAAGAGGAAAAGAAAGGAAAGAAAAATAGAGGAATAGAAAAAAAAACAGAGCAGAACAGAGGCCCAAGGGAAACAGG GGCACTGGTCGCCGGAGATAGGCTGAAAGTCACCGCACAGAGTTCACCGGAAGTTGGACGGTGCTTGTCGGAGGTCGGGA GGTGGCCATGGGTGCTGATCGAAGGTGGCTGAAGGAGATCGCACAGTGGCCATGGGTTCTGGTCGCAGAAGAAGAAGATG AATAGTGACAGATGAAACACGCGTTTCATTTATTTATGATGAAATCCCAAAAATGCCCTCAAAGTTTAACCTAATTATAA AATTTCAAGGGCAATTTAGGTTTTTCCACAACTTCACCTTATCTTCTTCTTGTGGCGCCGCGATCTGGCCGCGATTTGCG GCGCGACGGCTTCAGTAGCGCCGCGATCGATAACTATGATAGCTCTAATAGTGGGTCATTATAGTCACAGTTGCCGAATT GACTTTCAGCATCATAAAGAATCTATCTCGAATTCAGATTTTCTTTATCCATTCGTGCTGCATAACGTCTCTGCCAAGTG CCAGCCTTTGTCTCCACTCTCCATGGCCCATCAACAGGTTCACTTTCTGATTATTGGGCACTTCTTCAAGCATGAAGTAT TGTTCGCACATAGCCCTCCTCTCCCTGTACCTCGAACCATCGAATGATAGAAAATATATTTTGGGCTCCTCTGTTACCTA TTTACATCCAAGACCACTTTCTCTTCATCTCCCCCTATGCTAACACGAGAAGGGATTGGGTCACTTCCCTTGTCACGTTC CATCCTCGCCTCGAGTGCTGTGATGTTATGTTCTATTGCATCCATCCCTGATGTCATCCTGTTTTTGCATAGATGCTATA TTTAATAATATCTTTGATTCTTCTCTCCTAGTTACTATATTTGATAGTATCTTTAATTATTCTTTCCTATTTACTATATT TAATATGGCTATTGAGTATTGAGTATTACTCACCCAGTCATCCTTATTTCTCCTTTTATACTATCCTAATAAACTTTTAA GTAGCAGATACCCAACAGATTCCTATCAGGTTTTAGATCTTATATGATAACCTTTTCAAGATTAAAAAAAATTATATTTG AATAAAACATCACATACTCTATTCTTACTCTTGTTCTGTTGACGCTTTGGATTTTCAGGTACCCCTTGTATCACAGACTG TGTGATGGCAGAACTTGAGAAGTTAGGACAGAAATATCGTGTAGCTTTAAGGTACACATTCTTTCATGCTTCTTAATTAT CATTGCTCTTTATTTTCACACACTTGGGATATGCATGTAAAATATCAAGGCTTAACAATACTTTTGGTGAAATTTCTGCT TCAGTATGTGCATTATCAATTGGATTTATGTTTGAGATATTTTATTTCTATGCTAAAATCCCTAATTTTCACGTACAAGT GGATTTAATCACAAAGGGCAAAACATTCTCTTTAAATGACTGATATAGGACAAACCAAATTGCTGGACTCCCTGACTTTA TTTTGCTTTGAATACCATGGATTTTTGTTTAGGTAAGAAATCATACTTTTCCAGTTTCAGCTTCCTGATAATTTATCTTT TTTATACATGACAGGATTGCGAAAGATCCTCGATTTGAGAGAATACTATGTACTCATAAAGGGACCTATGCTGATGACTG CCTTGTTGAGAGAGTTACTCAGGTCAGTGTAATTTAAGCATCTGTTAAATGTTCAGAAACATGTTGGATCACCTTGATTA TTAAGATTAATTTGTCTTTTTTTGGCTGGATAAAAATTATTTATTTACCCCGCATGTCTTGATATCTTTGAGAAAAGGAA AACATATTCACATTTTTGTTTTGTTCAATAATGAAGGCAAGATCCTTCTACGATAATAATAACTTTTTTTTTTGGTTGTC AGCTGTTTGTTTCCTATTTTGTTGGCCTGGGATCTTTTAAATCTCTTAGTTTCATATGGTTTTCTAGATCTGTAAACTCA TTTCTGTTGCTATTGTCCGATGGAAATTGAATTTATAGAATTTCGGGATACTTACATTTGGGAGTTCCTTTCCCTCTGCC CTATGTTCCTTGTCATTTTGAACTTTGAAAAATTGCGCAAGTTTTTTCCAATTTTGAATTCATAATTGGATATGATTGAG TATTATTTGCTTCATTCTCGGTATTTGTGAGCATCATTTTCCAAATTCTTGGCCTTTGCAGTGTATATTCATTTAAGTGA ACACTTCTACTAGAAATAGTTCCAAATAAAAGTTATGTAACTATAACACATCTGCTGCTTATTTTATTTTATTTTTTGCA GTTTACTTGCACTAACCAATTTCTTGAATGCAGCATAAGTGCTACATTGTTGCAACATGTGATCGGGACTTGAAGAGAAG GATCCGGAAGGTAAAGCCACTAATCATTTCTCCATCTTTGATTGTTTTGCTATTGGACCTGGATACATGACCCATAATCT GGATTTCTGTATTGCAGATTCCTGGTGTGCCAATAATGTACATCACCAAACACAAGTACTCAATTGAGCGGTTGCCTGAA GCAACAATTGGTGGAGGTAATTACTCTGTATTATATGCCGTAATACTCTCGTAGTCTCATCTATTTGCTGTCAAGGTTGA TAGCCAAGAAAACATATTTATAGGTTATAGCTAACCACTAACTGTGGATTTGAGCTTAGTTAATTAGACTGAGGGATCTT ATATTGTAATAAATAGAAAAAGCTAAGATTCATTCAGTTTACCTCATCAGCTCCCAGGCTGTTTTGTTGTAATAATTAAT AAATAGAAAATACTAAATTCGAGTGTTCTGCTTGAATTCATGAGAAAAGGGATGATATGAACAACTTTTGGTCGATGTGA AAAACCCTGGTCAGTTTGGTCCCCCTTTAGTAATAGAAGTACAGATCCTAAGTGGTCACATTAAAATGAAGCAAAATTCA ACTGATTTGAACTTTAAAAAGTCAAATTTTACGATATAGCCAAACATTGTTTTTCTTAATGCACCTTAGTGAATTCATTC CAAATAATATGTAATTTTTTAGTTGTTAAGTCAAGTGCCTCATCAGATAGTCATGAACCCATTAATCCTCAATTAGCAGT ATTAGACTATGCTTGTTCTTTCTTTATTCACAAGTCTTTTACTTTTTGTTTTCCCTGGCACTGAACTGATACACCTATGA TTCTTAATGCAGCACCCAGAATTTGATACAAAGACACTGGTAAAGCTGTGCATCGATCCATAATGTTGACACTTATGAAA CCCTGCTACAATGCCGTGCTTGTTTGGTCATTTTGCTGGCTGAATGTCTCTGATGGAAGCTCGACGATGAACAGTAAGCA ACTTTTCAATGGTGTAACTCGTAGATTTGGATGCTGTAAAATTGTCTCTTCCTCGTGTTGCCTCAAACTACAGTGGTACT TTAATAGTTCTAGTCATATAGATATCTGGAAACGATACATTCTTTTTCCCTGAAAGAGAAACAAGTTTGTTTTCCTTGAA TCGGAAATATTCTAAATCACATTGTGATCATGCTTCACGTTTCAGAAGCCCTGAATTGGAAATTACAGAATTAAATTTCA CCAAATTTATTTTTTTAAATCGAAGGTTAGTACATCAACAAAAAAAAAATTCTAATGTGTAAATTAGTCACTGTGCGTAC GCTTTGCACGAGTTCATTAACTACGAGATGTGATGTGGTGGTCGCTCACATTGTCTCTTAACCATGAGGTATGGGGTTTG AACCTCGCCTATGGTAATGGAGCATATCTTGTGCCCAGCTGTCAGCTGTTTATCATAGTGCTAGCACATGTGGCCAAGGG ATTAGTCATCGTTGTTGGCGTCGGCCAGGGATGGATGTACTTAGGAAGGGAATGGGGCATTTGCCCCCACCACATTTTCA ATATTTGTTCATACTATTCTATAAAACTAAAATATAAATATGTAAATGCCCCCACACAATAATAAATGCCCCCTTGGCTT TACAATTTTACTTACTACTACTCAACTTTGTTAACTTTTCTTATGATTTAATTTCTTGATCTTCTTTTGTTTACTTATAC CTTATAGCAACATAAACATCCAAAAAACTCATTGCATTAACTCACTACTTGTCTTCAAACGTTACAATGCTTAATCCATT TTTTTTTCTTCTATAAACTTTGGACTCTGTAATGCGAGAAGTTTTAAAACTCATTTTTATTTCTTCAATAGGCTCCAAGA CTAAACAACAACAATTAGAAGAAGATGAAGAACACTAGTTTAATTTGGGGATGGGATGGAGGAGATGAAGGTTCTAGGGA ATTGGTGATTATGATTTTCCTTTTTCTGGATA
CDS sequence (LotjaGi3g1v0178700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTAAAGCTAAGAAGGGACCCAAATTTGCGGTTAGGAAGAAGCTTGTTACTTCCAAAGCAATTAAAAACTATAAAGA AGAAGTTTTGAACCCAGAAAAGAAGAACCTTCTAAAGGAAAAGTTACCCAGAAACATTCCAAGTTATTCTTCAGCTCTTT TCTTTCAATACAATACTGCATTGGGACCCCCTTATCGTGTTCTGGTGGATACCAACTTCATCAATTTCTCTATCCAGAAT AAATTGGATCTGGAGAAGGGAATGATGGACTGCTTATATGCGAAATGTACCCCTTGTATCACAGACTGTGTGATGGCAGA ACTTGAGAAGTTAGGACAGAAATATCGTGTAGCTTTAAGGATTGCGAAAGATCCTCGATTTGAGAGAATACTATGTACTC ATAAAGGGACCTATGCTGATGACTGCCTTGTTGAGAGAGTTACTCAGCATAAGTGCTACATTGTTGCAACATGTGATCGG GACTTGAAGAGAAGGATCCGGAAGATTCCTGGTGTGCCAATAATGTACATCACCAAACACAAGTACTCAATTGAGCGGTT GCCTGAAGCAACAATTGGTGGAGCACCCAGAATTTGA
Protein sequence (LotjaGi3g1v0178700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGKAKKGPKFAVRKKLVTSKAIKNYKEEVLNPEKKNLLKEKLPRNIPSYSSALFFQYNTALGPPYRVLVDTNFINFSIQN KLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRVALRIAKDPRFERILCTHKGTYADDCLVERVTQHKCYIVATCDR DLKRRIRKIPGVPIMYITKHKYSIERLPEATIGGAPRI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 197 | 197 | 6.4E-112 | – | |
| PANTHER | 1 | 197 | 197 | 6.4E-112 | – | |
| Gene3D | 50 | 193 | 144 | 4.6E-50 | – | |
| CDD | 55 | 185 | 131 | 1.30664E-103 | – | |
| SUPERFAMILY | 63 | 187 | 125 | 1.65E-33 | ||
| SMART | 65 | 164 | 100 | 1.9E-14 | ||
| Pfam | 90 | 186 | 97 | 7.7E-41 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Small-subunit processome | A large ribonucleoprotein complex that is an early preribosomal complex. In S. cerevisiae, it has a size of 80S and consists of the 35S pre-rRNA, early-associating ribosomal proteins most of which are part of the small ribosomal subunit, the U3 snoRNA and associated proteins. |
Expression pattern of LotjaGi3g1v0178700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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