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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0199400 |
| Transcript ID | LotjaGi3g1v0199400.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Disease resistance protein (TIR-NBS-LRR class); TAIR: AT5G17680.2 disease resistance protein (TIR-NBS-LRR class); Swiss-Prot: sp|Q40392|TMVRN_NICGU TMV resistance protein N; TrEMBL-Plants: tr|G7JKN5|G7JKN5_MEDTR Disease resistance protein (TIR-NBS-LRR class); Found in the gene: LotjaGi3g1v0199400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:29092596..29096806) extracted from Lotus japonicus Gifu genome v1.2.
CTAAAAGGATGGACAAATTATTATTCGTTAATTCATTATTTCTTTCTCATTATAAAATAAAATTGCATTATTAAGGAGAA CATTTCAAACAAACAAAATATTTTCATTGGCCCTGGAATGCTGGTACCAAACCCAAAGTAGAATTCGTCAAAATTCAATG CCAAGTGGGAGAGTGTGAATGTGAGACTTCTAACTTAAAGATAAGGTTGACCCAAGGTCAACTGAAATTGCTTCTTCCTT CTCTATTAAGTTGCAGATCCATGATGAATTGATGATACTCCAACTCCAACATATATGACCAGAAGTAGAATTTGAATCCC AACGGCCATAGCATAAGGTAAGATATTAAAGGTTAGTTGTTGGTTTACATTTATCTCAATCAATATTTTTGGCTAAAGAT CCACTAATCGGATCATCTTGCTTGCTGGTTTGTTTATCAAAACTAAATATGATAATATCCTCTTCCCTTCATTGCTTTTG ACTAACACTTTATTTGACTTTTCCACTTTCTTTCCAGTTGTTACTTACCAACCATCGACCTCATATTCATGATCTAAAAA GAACTTGTTCCAATCCAACGACACACTCTATCTCTGAATTCAAAAATTGAATATGGTGTATTTCTTTGTCTTATGGTCAT TTCTGTTAGTGTTGTTTTCCTTTGTCAGTCAGTTCCTTCTAAAAGGGAGGGGTATAGCAGCAGAGCCTGTATCAGACAAT GCTCCTCAAACAAACAAGCATGATGTTTTAGACCCACCTCAAGAAGAGAAGTATGATGTTTTTGTTAGCTTCCGGGGCGA GGACATCCGTGACGGTTTTCTTAGCCATCTGGCTGATGCTTTTCGTCAAAAGAAAATAAACGCCTTCATGGATGATAAGC TTAAGAGAGGACAAGAAATATGGCCATCACTTGTTGGAGCAATTGAAGGATCATTGGTTTCAGTGATCATATTCTCTGAA AACTACGCTACTTCACGCTGGTGTTTGAATGAATTGGTGAAAATACTTGAGTGCAGAGACAAATATGTACACACTGTAAT ACCAGTTTTCTACTGCGTAGATCCCACAGATGTACGACATCAAACAGGGAGTTATAAAGCAGCATTTGCTGAGCATACAA AAGAAATCGATCCGACCATGGTGCAAACATGGAGAGATGCTTTGAATAAATCTGCTAATTTATCAGGAAATATTTCATCA GATTTTCGGTAAGCTTTTACTATTTCTTTCCAATAAATATTTAATACTTTCTTGCTTTTTCTGACAAAATTGCAAAAGAC ATCTTTTTTTTCCTCTGTAACTACTTCTACTGAAATGTGCGGCTACCTTTTTAGTTACTTCTTCCACACTTATTGGACAA GTTCAAGCTAGGACCTTGTTTGTTCATTGAATTTAGTAGTTAAATTAGACTCCAGGAATACAATTAATTTTATTCCAACT GGCAAATAGAAATGGTACTTTTTCCTTACAGATTTCTAGATAAGAACCCTTTATTTCGTTGGGACTTGACCCTCATAATG AATTTCCATTAAAAAGAAAGGAAAAACGAAAGGAATTGTTACAACATGGGTGTCTAACACCCCAGTAAAATACAACTTCC AACCAAGTGAGCTAATAATTACACCATTGATTTTCACTCATAGTCTGTCTCTTCTATAGGAATGATGCTGAGCTGCTTGG AAAGATCATCAATGATGTGTTGCATCAAGTAAGGAGGTTGAGTAAGCCCACACTTAACTCAAAAGGATTTGTTGGAATTG GCAAATCAATTGCTGATATAGAAGTCTTGCTGCTGAAACAGTCAAAAGATGTCTGCATTATTGGAATTTGGGGTATGGGA GGTATCGGCAAGACAACTATTGCAGAACAAGTGTTCAATAAAATATGTTTTGAGTATGAAGGTACCTGTTTTTTGTCAAA TGTAAGAGAAGAGTTAGAAAGACATGGAACAATTTATTTGAAAGAAAAACTTTTCTCCACACTACTAGGAGAAGATGTGA AAATAACGTCACCAAGTGGATTGTCTTATTATATTTGGAGAAGGATTAGTCGTATGAAGGTTCTCATTGTTCTTGATGAT GTGAATGATTCAGATCAGCTGGAATTATTTGGAACTGTTGATAATTTTGGATCAGGTAGTAGAATAATTGTAACAACTCG AGATAAGCAATTGCTTATAGCTAAAGAAGTTGATGATATACACGAGGTTGGGGTATTGAGTTCTGGTGAAGCACTTGAGC TTTTCAATTTGATTGCCTTGAACCAAAGTCACCTTGAAATGGAGTATCATGAAACTTCAAAGAGGATTGTTGATTATGCC AAAGGCATTCCATTAGTTCTTAAAGTTTTGGGTCATCTTCTTCGTGGAAAAGATCAGAAAGTATGGGAAAGCCACCTAGA TAAGCTTAAGGAAATGCCGAGTAAAAAAGTTTATGATGTGATGAAATTGAGTTATGATGATCTAGATCGCAAAGAGAAAA CGGTTTTTCGGGATATTTCTTGTTTCTTCAATGGAATGAATATGAAAGTGGACTCCATAAAAGCTTTATTGAAAGATCGT GAAAGTGATAATTCAGTGGCTCATGCGTTAGAAAGGCTGAAAGATAAAGCTCTTATAATTGTCTCCAAGGATAATGTTGT ATCTGTGCATGATATTATCAAAGAAATGGCTTGGGAGATTGTTCGCCAAGAATCTGATGGAAACATTGGAAACCAAAGTC GATTTGGGGACGTTGATGAAGTATTGGAAAATGACAAGGTAATAGCCTAAATTATAATAACGTCTGTTAGATAAACAGTT GATATGTGGCTTTTAATGGTGTTTAATTTTTTTCTTTCCTACATTGATTACAGGGGACGGATGCCATTAGAATTATGCGG ATGAACTTGTCAAAAATTAAGAGCAGCAACCTGAAGTTTAGCTCCAACATGTTTTCTAGGATGAGAAAACTTCAATTTCT TGATTTTTACGGGGAACGTGAAGACTACCCTGATATTCTTCCTGAGGGACTTCAATCTTTACCCAATAAATTAAGATATC TTCGTTGGATGAATTACCCTCTGAAATCCTTGCCAGAAAAATTTTCTGCAGAAAAACTTGTTATGTTGGACATGACTTAT AGCAATGTGGAGATACTTTGGGATGGAGTGCAGGTAATTCAAACATTGTGGGCATGTGTTGTGTCTTCATTTTGTGCTCT TAATTGAAGGAATACAAAACTAACATTAGCTCATGTGCTAGCTATGTCTTCATTTTGTTTTATTTTATTACAGAATCTGG TGAATTTAAAACAAGTTAAACTCCGTTGTTGTGTATTCCTGAAGGAGCTGCCCGACTTTTCAAAGGCCACAAATCTTGAA GTGTTAATTGCCAGTTTTTGTTATGACTTGACTTGTGTGCATCCATTTATTTTCTCTCTGGGAAAGCTTGAGAAATTGGA TCTTAGTCACTGCTCTTCCCTCACCAGCCTTACAAGTAATGCTCAACCAAGCTGCCTCAGTTATCTCAACCTAGAAGGGT GTAAAGATCTAACAGAGTTCTCAGTGACATCAGAGAATATGATAGAACTTAATCTGAGCGACACCGGAATCAAAGCATTG CCTTCATCATTTGGAAGTCAAAGAAAGCTTGAAATCCTTGATTTAGAACAAGGTAGAATTGAGAGCTTACCATCATGCAT TGTGAATCTCACAAGACTACGATATCTAAACCTAAGTGATTGTGAGAAGCTTCAAACATTGCCAGAACTTCCCCCCTCCG TTGAAACTCTACTTACCCGTGGCTGCAGCTCTTTGAAGACAGTGTTGTTCCCTTCAACAGCTACTGAACAATCCCAGGAG AACAAGAAAAGGGTTGAGTTCTTTCAATGTGAGAGCTTGGATGAACGTTCTCTTTGGAAAAAATAACTTGTTGGGGAGAT GCTGCAACACTTAACAAAAGGATGTTGATGACGGAAGCGATTCAAAGCGTGTCTACACACTAACTTTTAGGTTCAATTCG CCCCCACCAATTAATGTATATTGGATGCAATTGAGAAGAACGACGAATTTCCTTCAGGATACTTTGAAAACCTGGATGTG ATTTGCACTAACACAACAAACATATCTTTAATAATAGTTTACATAGAGATGATTCCCAAAATTCACTCATGCATTAGTGC AGTGAAAGATGATTTAGAATAATATAAATGGAAGAAAAATTGGTTGAATTA
CDS sequence (LotjaGi3g1v0199400.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATGATAAGCTTAAGAGAGGACAAGAAATATGGCCATCACTTGTTGGAGCAATTGAAGGATCATTGGTTTCAGTGAT CATATTCTCTGAAAACTACGCTACTTCACGCTGGTGTTTGAATGAATTGGTGAAAATACTTGAGTGCAGAGACAAATATG TACACACTGTAATACCAGTTTTCTACTGCGTAGATCCCACAGATGTACGACATCAAACAGGGAGTTATAAAGCAGCATTT GCTGAGCATACAAAAGAAATCGATCCGACCATGGTGCAAACATGGAGAGATGCTTTGAATAAATCTGCTAATTTATCAGG AAATATTTCATCAGATTTTCGGAATGATGCTGAGCTGCTTGGAAAGATCATCAATGATGTGTTGCATCAAGTAAGGAGGT TGAGTAAGCCCACACTTAACTCAAAAGGATTTGTTGGAATTGGCAAATCAATTGCTGATATAGAAGTCTTGCTGCTGAAA CAGTCAAAAGATGTCTGCATTATTGGAATTTGGGGTATGGGAGGTATCGGCAAGACAACTATTGCAGAACAAGTGTTCAA TAAAATATGTTTTGAGTATGAAGGTACCTGTTTTTTGTCAAATGTAAGAGAAGAGTTAGAAAGACATGGAACAATTTATT TGAAAGAAAAACTTTTCTCCACACTACTAGGAGAAGATGTGAAAATAACGTCACCAAGTGGATTGTCTTATTATATTTGG AGAAGGATTAGTCGTATGAAGGTTCTCATTGTTCTTGATGATGTGAATGATTCAGATCAGCTGGAATTATTTGGAACTGT TGATAATTTTGGATCAGGTAGTAGAATAATTGTAACAACTCGAGATAAGCAATTGCTTATAGCTAAAGAAGTTGATGATA TACACGAGGTTGGGGTATTGAGTTCTGGTGAAGCACTTGAGCTTTTCAATTTGATTGCCTTGAACCAAAGTCACCTTGAA ATGGAGTATCATGAAACTTCAAAGAGGATTGTTGATTATGCCAAAGGCATTCCATTAGTTCTTAAAGTTTTGGGTCATCT TCTTCGTGGAAAAGATCAGAAAGTATGGGAAAGCCACCTAGATAAGCTTAAGGAAATGCCGAGTAAAAAAGTTTATGATG TGATGAAATTGAGTTATGATGATCTAGATCGCAAAGAGAAAACGGTTTTTCGGGATATTTCTTGTTTCTTCAATGGAATG AATATGAAAGTGGACTCCATAAAAGCTTTATTGAAAGATCGTGAAAGTGATAATTCAGTGGCTCATGCGTTAGAAAGGCT GAAAGATAAAGCTCTTATAATTGTCTCCAAGGATAATGTTGTATCTGTGCATGATATTATCAAAGAAATGGCTTGGGAGA TTGTTCGCCAAGAATCTGATGGAAACATTGGAAACCAAAGTCGATTTGGGGACGTTGATGAAGTATTGGAAAATGACAAG GGGACGGATGCCATTAGAATTATGCGGATGAACTTGTCAAAAATTAAGAGCAGCAACCTGAAGTTTAGCTCCAACATGTT TTCTAGGATGAGAAAACTTCAATTTCTTGATTTTTACGGGGAACGTGAAGACTACCCTGATATTCTTCCTGAGGGACTTC AATCTTTACCCAATAAATTAAGATATCTTCGTTGGATGAATTACCCTCTGAAATCCTTGCCAGAAAAATTTTCTGCAGAA AAACTTGTTATGTTGGACATGACTTATAGCAATGTGGAGATACTTTGGGATGGAGTGCAGGTAATTCAAACATTGTGGGC ATGTGTTGTGTCTTCATTTTGTGCTCTTAATTGA
Protein sequence (LotjaGi3g1v0199400.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDDKLKRGQEIWPSLVGAIEGSLVSVIIFSENYATSRWCLNELVKILECRDKYVHTVIPVFYCVDPTDVRHQTGSYKAAF AEHTKEIDPTMVQTWRDALNKSANLSGNISSDFRNDAELLGKIINDVLHQVRRLSKPTLNSKGFVGIGKSIADIEVLLLK QSKDVCIIGIWGMGGIGKTTIAEQVFNKICFEYEGTCFLSNVREELERHGTIYLKEKLFSTLLGEDVKITSPSGLSYYIW RRISRMKVLIVLDDVNDSDQLELFGTVDNFGSGSRIIVTTRDKQLLIAKEVDDIHEVGVLSSGEALELFNLIALNQSHLE MEYHETSKRIVDYAKGIPLVLKVLGHLLRGKDQKVWESHLDKLKEMPSKKVYDVMKLSYDDLDRKEKTVFRDISCFFNGM NMKVDSIKALLKDRESDNSVAHALERLKDKALIIVSKDNVVSVHDIIKEMAWEIVRQESDGNIGNQSRFGDVDEVLENDK GTDAIRIMRMNLSKIKSSNLKFSSNMFSRMRKLQFLDFYGEREDYPDILPEGLQSLPNKLRYLRWMNYPLKSLPEKFSAE KLVMLDMTYSNVEILWDGVQVIQTLWACVVSSFCALN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 1 | 105 | 105 | 18.854 | ||
| SMART | 1 | 105 | 105 | 1.9E-10 | ||
| Gene3D | 1 | 132 | 132 | 2.7E-46 | ||
| PANTHER | 2 | 582 | 581 | 7.3E-233 | – | |
| PANTHER | 2 | 582 | 581 | 7.3E-233 | – | |
| Pfam | 2 | 140 | 139 | 2.7E-33 | ||
| SUPERFAMILY | 3 | 107 | 105 | 1.7E-26 | ||
| SUPERFAMILY | 126 | 393 | 268 | 1.93E-59 | ||
| Gene3D | 133 | 294 | 162 | 9.3E-29 | – | |
| Pfam | 157 | 380 | 224 | 9.2E-30 | ||
| PRINTS | 167 | 182 | 16 | 2.5E-20 | – | |
| PRINTS | 242 | 256 | 15 | 2.5E-20 | – | |
| Gene3D | 300 | 383 | 84 | 2.4E-8 | – | |
| PRINTS | 334 | 348 | 15 | 2.5E-20 | – | |
| SUPERFAMILY | 369 | 460 | 92 | 1.39E-7 | ||
| Gene3D | 473 | 594 | 122 | 1.1E-6 | ||
| PRINTS | 490 | 506 | 17 | 2.5E-20 | – | |
| SUPERFAMILY | 491 | 575 | 85 | 2.72E-5 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | Signal transduction | The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. | ||
| Molecular function | ADP binding | Interacting selectively and non-covalently with ADP, adenosine 5'-diphosphate. |
Expression pattern of LotjaGi3g1v0199400.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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