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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0208200 |
| Transcript ID | LotjaGi3g1v0208200.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | PHD finger alfin-like protein; TAIR: AT5G05610.1 alfin-like 1; Swiss-Prot: sp|Q9FFF5|ALFL1_ARATH PHD finger protein ALFIN-LIKE 1; TrEMBL-Plants: tr|I3SZL0|I3SZL0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0208200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:30778400..30779418) extracted from Lotus japonicus Gifu genome v1.2.
GCATTTTCCCTCACTTTCTGTTCTGAGATGGGCATATGCCTCCTTTATTTATTGATGGTTCCACTGATTCTTTATGGCAG GAAACGGCTATTTAGCTTGATCAATGATCTTCCCACCGTTTTTGAAGTTGTCACTGAGAGGAAGCCAATAAAAGACAAGC CCACTGTAGACAGTGGAAGCAAATCTCGGGGTGGCACCAAGGTTAGTGTTCCTGTTTGGTTTGGAGTACTGTTTTTCTTT TGCTGCATAAGCAGAAGTTAGATGTTTTTATTCAAATACTTGGGTGAGGCCTTGTGCATTCTAAAAGTTTTTGATTGACG TTAAGGTATTAGTGTCATTGCATCTTTGGAAGTTATTAAACTATTTTATTTCTCTCTTTTTTTTGGTGTTTATCTACTAA GTCAAACTCAAAGAAATACTTTTAAACATTGTTGTAGAACTGTAATAAAATGCCATTGACATGTTTATTTGTTCTAGTAT TAGTGGTTAACTTTCAGAAGCAGCTTTGAGCACACTAAACTGGACCTTGGAGTTTCTGGATAGCAACTTTTGTCTTTGCT TATGTATATGATCATTAAAATAGCAATCAAAGAGTACACTGAGACTGCATTTTTGAAACTCTTCGATCATGGTGTTTGTT TCATGTCAATGCACTGTTAGCATCGATACACTTAGTCTAAGACTATATGAATTAAAGGTTTGGTAATGCGCTAAACCTTT CCATGCTGTTGTTATATGCTACATTCTTGTTCATTTATCTGCAGAGATCAAGTGATGGGCAAGTTAAAAGCAGCAACCCA AAGTTCGCAGATGAAGGTTATGAGGAGGATGAAGATGAGCATAGCGAAACCCTCTGTGGGAGCTGCGGCGGAAATTACAA TGCGGATGAATTCTGGATTGGATGTGATGTGTGTGAGAGGTGGTACCATGGAAAATGTGTGAAGATTACTCCTGCAAAGG CTGAGAGCATAAAGCAGTACAAATGCCCATCATGCAGCATGAAGCGGAGCAGGCCCTAG
CDS sequence (LotjaGi3g1v0208200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGCATATGCCTCCTTTATTTATTGATGGTTCCACTGATTCTTTATGGCAGGAAACGGCTATTTAGCTTGATCAATGA TCTTCCCACCGTTTTTGAAGTTGTCACTGAGAGGAAGCCAATAAAAGACAAGCCCACTGTAGACAGTGGAAGCAAATCTC GGGGTGGCACCAAGAGATCAAGTGATGGGCAAGTTAAAAGCAGCAACCCAAAGTTCGCAGATGAAGGTTATGAGGAGGAT GAAGATGAGCATAGCGAAACCCTCTGTGGGAGCTGCGGCGGAAATTACAATGCGGATGAATTCTGGATTGGATGTGATGT GTGTGAGAGGTGGTACCATGGAAAATGTGTGAAGATTACTCCTGCAAAGGCTGAGAGCATAAAGCAGTACAAATGCCCAT CATGCAGCATGAAGCGGAGCAGGCCCTAG
Protein sequence (LotjaGi3g1v0208200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGICLLYLLMVPLILYGRKRLFSLINDLPTVFEVVTERKPIKDKPTVDSGSKSRGGTKRSSDGQVKSSNPKFADEGYEED EDEHSETLCGSCGGNYNADEFWIGCDVCERWYHGKCVKITPAKAESIKQYKCPSCSMKRSRP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 23 | 23 | - | – | |
| SignalP_EUK | 1 | 17 | 17 | - | – | |
| Phobius | 1 | 3 | 3 | - | – | |
| Phobius | 4 | 15 | 12 | - | – | |
| Phobius | 16 | 23 | 8 | - | – | |
| PANTHER | 16 | 141 | 126 | 6.6E-72 | – | |
| PANTHER | 16 | 141 | 126 | 6.6E-72 | – | |
| Phobius | 24 | 142 | 119 | - | – | |
| MobiDBLite | 42 | 86 | 45 | - | – | |
| MobiDBLite | 50 | 68 | 19 | - | – | |
| SUPERFAMILY | 77 | 140 | 64 | 1.55E-19 | ||
| Gene3D | 81 | 142 | 62 | 3.1E-24 | ||
| ProSiteProfiles | 86 | 138 | 53 | 9.392 | ||
| CDD | 88 | 138 | 51 | 2.97476E-30 | – | |
| SMART | 88 | 136 | 49 | 3.0E-10 | ||
| ProSitePatterns | 89 | 135 | 47 | - | ||
| Pfam | 89 | 137 | 49 | 2.5E-11 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0208200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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