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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0217800 |
| Transcript ID | LotjaGi3g1v0217800.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Tubulin beta chain; TAIR: AT5G23860.1 tubulin beta 8; Swiss-Prot: sp|P12460|TBB2_SOYBN Tubulin beta-2 chain; TrEMBL-Plants: tr|I1JLU8|I1JLU8_SOYBN Tubulin beta chain; Found in the gene: LotjaGi3g1v0217800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:32851354..32853429) extracted from Lotus japonicus Gifu genome v1.2.
ATGCGTGAGATCCTTCACATCCAGGGTGGCCAGTGCGGCAACCAGATCGGAGCCAAGTTCTGGGAAGTCGTTTGCGCCGA GCACGGCATCGACCACACCGGCAAGTACGGCGGCGACTCCGAGCTTCAGCTTGAGAGGATCAATGTCTACTACAACGAAG CCAGTTGCGGTAGGTTCGTTCCTCGCGCTGTTCTCATGGATCTGGAACCGGGGACCATGGACAGTGTTAGGTCTGGGCCG TATGGTCAGATCTTCAGGCCGGACAACTTTGTGTTTGGTCAATCTGGTGCTGGGAACAACTGGGCTAAAGGGCATTATAC CGAGGGCGCTGAACTGATCGATTCTGTGCTTGATGTTGTTCGTAAGGAGGCGGAGAACTGCGATTGTCTTCAGGGTATGG GTTTTTCTTTTGTTTTTTGATGGATTGTTGAATCGATTTCGTGTTTTGTGTCTGGTTTTGCTCTGGGTATGTGTTTTATT GTTGTTTTTCAGTGAAATGTTGTAGATCTGTGTGTTTTTCGAGTGATCTGTGGGTGGTTTAGAAATGGGTTTTGTGTTTT CTGATTCCGATTGGTTGTGAACCCTAAACCCCAGAATTTTCTGAACATGTGTAGATTTGAAACCCTAGATTTGAAGGGTT TCGTGGGTGATTTTGAAATGGTACGTTTTAATGAAATGTGTAAACCTGCATTTTAGTGATTGATTATGAACCCTAAAAAC CGTTGTTGAATTGAATTTAGGGTTTTGAGGGTGATTTTGAAATGGTACTTGTTCATGTGTTGTTCAGATTGCGTTTTGAT GATTGATTATTAATTAACCCTAAACCCGAAGTCTTTCAGAAACATTGTTGAATTTGATGGGTTTTATATGTGATTTGGTC ATTGATTATAAGCCCTAATCCTGAATGTTTCTGAAAATGTGAACCTTGTTGAATTTTAAGTGTTTTGTGGGTGATTTGAA GTGCTGGCTGTGTAAACATTGGGTTGTTTAATTGCTTGTTTTGGTTTTTTCTTTTGCATGAACAGGTTTTCAGGTGTGCC ACTCCTTGGGTGGAGGGACTGGGTCTGGAATGGGTACCCTGTTGATTTCAAAGATCAGGGAAGAATACCCAGATAGGATG ATGCTTACCTTCTCCGTTTTTCCTTCTCCAAAGGTTTCTGACACAGTGGTTGAACCCTACAATGCTACTCTGTCTGTTCA CCAGCTTGTTGAAAATGCAGATGAGTGCATGGTGCTTGACAATGAAGCCTTGTATGACATTTGCTTCCGTACCCTGAAGC TCACCACCCCAAGCTGTAAGCCATACATACCCCCCCATTCACCCTTCTTAATATATGCCTTGTAAATTTTGAAGTCTGAT TGATTATATCTGATTGTGGTTGTTTTCTCTGTTGCAGTTGGTGATCTTAACCATTTGATATCAGCAACTATGTCTGGTGT CACTTGCTGTTTGAGATTCCCTGGTCAGCTTAACTCTGATCTGAGGAAGCTTGCTGTGAACCTCATTCCCTTCCCTCGTC TTCACTTTTTCATGGTTGGGTTTGCTCCATTGACATCCAGGGGATCTCAGCAGTACAGGGCTCTGAGTGTGCCAGAGCTT ACACAACAGATGTGGGATTCCAAGAACATGATGTGTGCTGCTGACCCCAGGCATGGACGTTACCTCACTGCTTCTGCCAT GTTCAGAGGCAAGATGAGCACCAAGGAGGTTGATGAACAGATGATTAATGTTCAGAACAAGAACTCCTCTTACTTTGTGG AATGGATTCCCCACAATGTGAAATCCACTGTTTGTGATATCCCCCCAACCGGCTTGAAGATGGCATCCACATTCATTGGA AATTCCACCTCAATTCAAGAAATGTTCCGCAGGGTGAGTGAGCAGTTCACTGCTATGTTCAGGAGAAAGGCTTTCTTGCA TTGGTACACTGGTGAAGGAATGGATGAGATGGAGTTCACTGAAGCTGAAAGCAACATGAATGATCTTGTGTCTGAGTATC AGCAGTACCAAGATGCAACTGCTGATGAAGATGAGTATGAAGAGGAAGAGGGAGAGTATGAGCAAGAATGATGTGA
CDS sequence (LotjaGi3g1v0217800.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCGTGAGATCCTTCACATCCAGGGTGGCCAGTGCGGCAACCAGATCGGAGCCAAGTTCTGGGAAGTCGTTTGCGCCGA GCACGGCATCGACCACACCGGCAAGTACGGCGGCGACTCCGAGCTTCAGCTTGAGAGGATCAATGTCTACTACAACGAAG CCAGTTGCGGTAGGTTCGTTCCTCGCGCTGTTCTCATGGATCTGGAACCGGGGACCATGGACAGTGTTAGGTCTGGGCCG TATGGTCAGATCTTCAGGCCGGACAACTTTGTGTTTGGTCAATCTGGTGCTGGGAACAACTGGGCTAAAGGGCATTATAC CGAGGGCGCTGAACTGATCGATTCTGTGCTTGATGTTGTTCGTAAGGAGGCGGAGAACTGCGATTGTCTTCAGGGTATGG GTTTTCAGGTGTGCCACTCCTTGGGTGGAGGGACTGGGTCTGGAATGGGTACCCTGTTGATTTCAAAGATCAGGGAAGAA TACCCAGATAGGATGATGCTTACCTTCTCCGTTTTTCCTTCTCCAAAGGTTTCTGACACAGTGGTTGAACCCTACAATGC TACTCTGTCTGTTCACCAGCTTGTTGAAAATGCAGATGAGTGCATGGTGCTTGACAATGAAGCCTTGTATGACATTTGCT TCCGTACCCTGAAGCTCACCACCCCAAGCTTTGGTGATCTTAACCATTTGATATCAGCAACTATGTCTGGTGTCACTTGC TGTTTGAGATTCCCTGGTCAGCTTAACTCTGATCTGAGGAAGCTTGCTGTGAACCTCATTCCCTTCCCTCGTCTTCACTT TTTCATGGTTGGGTTTGCTCCATTGACATCCAGGGGATCTCAGCAGTACAGGGCTCTGAGTGTGCCAGAGCTTACACAAC AGATGTGGGATTCCAAGAACATGATGTGTGCTGCTGACCCCAGGCATGGACGTTACCTCACTGCTTCTGCCATGTTCAGA GGCAAGATGAGCACCAAGGAGGTTGATGAACAGATGATTAATGTTCAGAACAAGAACTCCTCTTACTTTGTGGAATGGAT TCCCCACAATGTGAAATCCACTGTTTGTGATATCCCCCCAACCGGCTTGAAGATGGCATCCACATTCATTGGAAATTCCA CCTCAATTCAAGAAATGTTCCGCAGGGTGAGTGAGCAGTTCACTGCTATGTTCAGGAGAAAGGCTTTCTTGCATTGGTAC ACTGGTGAAGGAATGGATGAGATGGAGTTCACTGAAGCTGAAAGCAACATGAATGATCTTGTGTCTGAGTATCAGCAGTA CCAAGATGCAACTGCTGATGAAGATGAGTATGAAGAGGAAGAGGGAGAGTATGAGCAAGAATGA
Protein sequence (LotjaGi3g1v0217800.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MREILHIQGGQCGNQIGAKFWEVVCAEHGIDHTGKYGGDSELQLERINVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGP YGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGMGFQVCHSLGGGTGSGMGTLLISKIREE YPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTC CLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALSVPELTQQMWDSKNMMCAADPRHGRYLTASAMFR GKMSTKEVDEQMINVQNKNSSYFVEWIPHNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWY TGEGMDEMEFTEAESNMNDLVSEYQQYQDATADEDEYEEEEGEYEQE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | 1 | 245 | 245 | 5.49E-99 | ||
| Gene3D | 1 | 265 | 265 | 2.4E-126 | ||
| ProSitePatterns | 1 | 4 | 4 | - | ||
| PANTHER | 2 | 445 | 444 | 0.0 | ||
| CDD | 2 | 428 | 427 | 0.0 | – | |
| PANTHER | 2 | 445 | 444 | 0.0 | – | |
| Pfam | 3 | 213 | 211 | 3.0E-67 | ||
| PRINTS | 10 | 30 | 21 | 5.3E-91 | ||
| PRINTS | 41 | 58 | 18 | 5.3E-121 | ||
| SMART | 47 | 246 | 200 | 5.9E-66 | ||
| PRINTS | 51 | 70 | 20 | 5.3E-91 | ||
| PRINTS | 88 | 99 | 12 | 5.3E-121 | ||
| PRINTS | 93 | 104 | 12 | 5.3E-91 | ||
| PRINTS | 106 | 130 | 25 | 5.3E-91 | ||
| PRINTS | 108 | 126 | 19 | 5.3E-121 | ||
| ProSitePatterns | 142 | 148 | 7 | - | ||
| PRINTS | 153 | 174 | 22 | 5.3E-91 | ||
| PRINTS | 154 | 166 | 13 | 5.3E-121 | ||
| PRINTS | 178 | 191 | 14 | 5.3E-91 | ||
| PRINTS | 192 | 212 | 21 | 5.3E-91 | ||
| PRINTS | 214 | 226 | 13 | 5.3E-121 | ||
| PRINTS | 232 | 241 | 10 | 5.3E-121 | ||
| SUPERFAMILY | 246 | 431 | 186 | 1.59E-80 | ||
| PRINTS | 247 | 260 | 14 | 5.3E-121 | ||
| SMART | 248 | 385 | 138 | 3.2E-42 | ||
| Pfam | 263 | 384 | 122 | 7.9E-41 | ||
| Gene3D | 266 | 375 | 110 | 1.8E-52 | ||
| PRINTS | 267 | 283 | 17 | 5.3E-121 | ||
| PRINTS | 313 | 331 | 19 | 5.3E-121 | ||
| PRINTS | 331 | 345 | 15 | 5.3E-121 | ||
| PRINTS | 349 | 372 | 24 | 5.3E-121 | ||
| PRINTS | 372 | 400 | 29 | 5.3E-91 | ||
| Gene3D | 376 | 446 | 71 | 5.2E-34 | ||
| PRINTS | 379 | 390 | 12 | 5.3E-121 | ||
| Coils | 410 | 447 | 38 | - | – | |
| PRINTS | 414 | 432 | 19 | 5.3E-121 | ||
| MobiDBLite | 422 | 447 | 26 | - | – | |
| MobiDBLite | 429 | 447 | 19 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | GTPase activity | Catalysis of the reaction: GTP + H2O = GDP + phosphate. | ||
| Molecular function | Structural constituent of cytoskeleton | The action of a molecule that contributes to the structural integrity of a cytoskeletal structure. | ||
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. | ||
| Cellular component | Microtubule | Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle. | ||
| Biological process | Microtubule-based process | Any cellular process that depends upon or alters the microtubule cytoskeleton, that part of the cytoskeleton comprising microtubules and their associated proteins. |
Expression pattern of LotjaGi3g1v0217800.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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