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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0220800 |
| Transcript ID | LotjaGi3g1v0220800.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | WD-repeat cell cycle regulatory protein; TAIR: AT4G33270.1 Transducin family protein / WD-40 repeat family protein; Swiss-Prot: sp|Q9SZA4|CDC21_ARATH Cell division cycle 20.1, cofactor of APC complex; TrEMBL-Plants: tr|A5BP73|A5BP73_VITVI Putative uncharacterized protein; Found in the gene: LotjaGi3g1v0220800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:33270317..33272602) extracted from Lotus japonicus Gifu genome v1.2.
AGATCACATACAATCTTCTCTGACTCTCTCTCTCTCTCTCTCTCTCAATCTCTCTCGTTCTTCGAAGCTCTGAGGCTCAC AATCGATCACCACCGCGCGCCGCCACTAACATTCAACATTCTCTCTCTGACACCATCGATCACCACCGCACGCCGCCATT AACATTCAACATTCTCTCTTTTTCTTTATCATATCTTTTTCCATTGATTTTGTCTCCATCTTCTTGTACTGTAGGGTTTT TCTCGGATCATCTTCTTCCGTCTCCGATCATGGACGCGGCGGGAACGTGGACCTCTCCGATCAAGTTCAAATCCCGATCC CTCTTCCATCACAGGAAGAGTTCCCAGGAAAACGTAACCCCTCAAACCCTTGATTTTACCGATTTGGGAATTTTCTTGTT GAATTTCTTGAGTTCTCACTCACTCAATCTTGGTGTTTTCTTGGAACAGTTGGACAGGTTTATTCCGAACAGGTCAGCCA TGGATTTCAGTTACGCTCACTACATGCTGACGGAGGGAAGGAAGAACAAGGAGGAGCCGGTGGTGACGTCGCCGTCCAAA GAAGCATACCGCAAGAAACTCGCCGAGGCTTTCAACATGAACCGGACGCGAATCTTGGCCTTCAAGAACAAGCCGCCTCA ACCTGTTGAAGCCATACCCAGTGATTTCTTTTCCCCTTCTCCTCCTCAATCCAAATCTTCCAAGCCCAGACGACACATTC CTCAGGTATTTTGATTTGCTTTGTGTTTCTGTGCTTGATTCTTGATTCTAATCAAATGTTTCGAATTGCACTCTAACTGT TTGTGAAAATTCCTTTTTGTTTTTCAGAGTTCTGAGAGGACATTGGATGCCCCTGATATAGAAGATGACTTCTACTTGAA TCTACTTGACTGGGGTAGCAGTAATGTGCTGTGCATTGCCCTTGGAAACATTGTGTATCTCTGGAATGCTTCTGATAGCT CCACTGCAGAACTTGTTACTGTGAATGAGGAAGAAGGCCCCATTACAAGTGTTAGCTGGGCCCCTGATGGACGCCATTTA GCTGTTGGTTTGAACAATTCCATTGTCCAGTTGTGGGATTCTACTACTTCTAAACTGGTAAATACAAAATGCCATGCTTC TCATTTGTTATCCTTATGCATTCTGATGGTTTTAACATGCTACTTTTGTCATCTTTTGTGCTGAACTGTTGTTGATTATT GTAAAATTGAAAATGCTGATGATGCATTCTGATGATTTTAACATGGTTTGATTTGGTGTGTGCAGCTGAGAGTACTCAGG GGTGGACATCGAGGAAGAGTAGGATCACTGGCTTGGAACAATCACATCCTCTCAACAGGAGGAATGGAGGGTAGGGTGGT TAACAATGATGTGAGAATAAGGTCTCACATTGTTGAAACCTACAGAGGACATAACCAGGAGGTGTGTGGGCTCAAATGGT CTCCCTCAGGACAACAATTGGCAAGTGGAGGCAATGACAATCTTGTTCACATATGGGACAGGTCAAGGGCCTCTTCCAAC TCGCCGACCCGTTGGCTACACCGGTTCGAGGAGCATGTAGCTGCTGTGAAGGCACTGGCCTGGTGTCCATTTCAGGGAAA TCTTCTAGCTTCTGGTGGAGGAGGGAGTGACCAGTGCATCAAGTTTTGGAACACACATACTGGTGCATGCTTGAACACTA TCAACACTGGCTCTCAGGTGTGTGCCCTTCTTTGGAGCAAGAGTGAGCGGGAGTTGCTTAGCTCGCACGGTTTCACCCAG AACCAGCTCACTCTCTGGAAATACCCTTCTATGCTGAAGATGGCAGAGCTCAATGGACATACCTCCAGGGTGCTGCACAT GGCTCAGAGTCCAGATGGGTGTACTGTGGCCTCTGCAGCAGCTGATGAGACTCTTCGATTCTGGAATGTTTTTGGAACTC CAGAAGCAAGCAAACCATCTCCAAAGCGAAACCGCGAGCCTTTCGCTGATTTCAACCGTATCCGTTGAAGATTACATGTA AACTTTGTGGAGTGCTGAAGATCATTGGTATTGGGGGTAGGCATTGTATAAAATCGTTAATTTTCTTTCATTTTTAACTT ACTCTATTCTTTACAGAATTGTATACACAGTGTGCAAATTGGTTGCACAGTTTATTGTTTATAACCCATTCTTTACAGAA TTGTATACACAGTGCGCAAATTGGTTTGCGCAGTTTATAGTTTATATGAATTATTGGATTTTTTTCACTTTGGTGTTACA GAAAGGATTTTTTTCACAAGTCACCTTATATTTTTAGAAGGCACTG
CDS sequence (LotjaGi3g1v0220800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACGCGGCGGGAACGTGGACCTCTCCGATCAAGTTCAAATCCCGATCCCTCTTCCATCACAGGAAGAGTTCCCAGGA AAACTTGGACAGGTTTATTCCGAACAGGTCAGCCATGGATTTCAGTTACGCTCACTACATGCTGACGGAGGGAAGGAAGA ACAAGGAGGAGCCGGTGGTGACGTCGCCGTCCAAAGAAGCATACCGCAAGAAACTCGCCGAGGCTTTCAACATGAACCGG ACGCGAATCTTGGCCTTCAAGAACAAGCCGCCTCAACCTGTTGAAGCCATACCCAGTGATTTCTTTTCCCCTTCTCCTCC TCAATCCAAATCTTCCAAGCCCAGACGACACATTCCTCAGAGTTCTGAGAGGACATTGGATGCCCCTGATATAGAAGATG ACTTCTACTTGAATCTACTTGACTGGGGTAGCAGTAATGTGCTGTGCATTGCCCTTGGAAACATTGTGTATCTCTGGAAT GCTTCTGATAGCTCCACTGCAGAACTTGTTACTGTGAATGAGGAAGAAGGCCCCATTACAAGTGTTAGCTGGGCCCCTGA TGGACGCCATTTAGCTGTTGGTTTGAACAATTCCATTGTCCAGTTGTGGGATTCTACTACTTCTAAACTGCTGAGAGTAC TCAGGGGTGGACATCGAGGAAGAGTAGGATCACTGGCTTGGAACAATCACATCCTCTCAACAGGAGGAATGGAGGGTAGG GTGGTTAACAATGATGTGAGAATAAGGTCTCACATTGTTGAAACCTACAGAGGACATAACCAGGAGGTGTGTGGGCTCAA ATGGTCTCCCTCAGGACAACAATTGGCAAGTGGAGGCAATGACAATCTTGTTCACATATGGGACAGGTCAAGGGCCTCTT CCAACTCGCCGACCCGTTGGCTACACCGGTTCGAGGAGCATGTAGCTGCTGTGAAGGCACTGGCCTGGTGTCCATTTCAG GGAAATCTTCTAGCTTCTGGTGGAGGAGGGAGTGACCAGTGCATCAAGTTTTGGAACACACATACTGGTGCATGCTTGAA CACTATCAACACTGGCTCTCAGGTGTGTGCCCTTCTTTGGAGCAAGAGTGAGCGGGAGTTGCTTAGCTCGCACGGTTTCA CCCAGAACCAGCTCACTCTCTGGAAATACCCTTCTATGCTGAAGATGGCAGAGCTCAATGGACATACCTCCAGGGTGCTG CACATGGCTCAGAGTCCAGATGGGTGTACTGTGGCCTCTGCAGCAGCTGATGAGACTCTTCGATTCTGGAATGTTTTTGG AACTCCAGAAGCAAGCAAACCATCTCCAAAGCGAAACCGCGAGCCTTTCGCTGATTTCAACCGTATCCGTTGA
Protein sequence (LotjaGi3g1v0220800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDAAGTWTSPIKFKSRSLFHHRKSSQENLDRFIPNRSAMDFSYAHYMLTEGRKNKEEPVVTSPSKEAYRKKLAEAFNMNR TRILAFKNKPPQPVEAIPSDFFSPSPPQSKSSKPRRHIPQSSERTLDAPDIEDDFYLNLLDWGSSNVLCIALGNIVYLWN ASDSSTAELVTVNEEEGPITSVSWAPDGRHLAVGLNNSIVQLWDSTTSKLLRVLRGGHRGRVGSLAWNNHILSTGGMEGR VVNNDVRIRSHIVETYRGHNQEVCGLKWSPSGQQLASGGNDNLVHIWDRSRASSNSPTRWLHRFEEHVAAVKALAWCPFQ GNLLASGGGGSDQCIKFWNTHTGACLNTINTGSQVCALLWSKSERELLSSHGFTQNQLTLWKYPSMLKMAELNGHTSRVL HMAQSPDGCTVASAAADETLRFWNVFGTPEASKPSPKRNREPFADFNRIR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 16 | 439 | 424 | 1.4E-250 | ||
| PANTHER | 16 | 439 | 424 | 1.4E-250 | – | |
| Gene3D | 79 | 427 | 349 | 1.6E-122 | ||
| MobiDBLite | 95 | 124 | 30 | - | – | |
| SUPERFAMILY | 131 | 425 | 295 | 3.24E-59 | ||
| CDD | 154 | 424 | 271 | 6.05645E-42 | – | |
| ProSiteProfiles | 156 | 433 | 278 | 32.114 | ||
| SMART | 166 | 204 | 39 | 1.4E-4 | ||
| Pfam | 171 | 229 | 59 | 2.2E-7 | ||
| ProSiteProfiles | 172 | 213 | 42 | 12.079 | ||
| SMART | 207 | 245 | 39 | 2.1 | ||
| SMART | 249 | 288 | 40 | 6.0E-10 | ||
| Pfam | 253 | 288 | 36 | 2.8E-8 | ||
| ProSiteProfiles | 256 | 288 | 33 | 15.254 | ||
| SMART | 297 | 339 | 43 | 0.0061 | ||
| Pfam | 301 | 339 | 39 | 0.022 | ||
| ProSitePatterns | 326 | 340 | 15 | - | ||
| SMART | 342 | 382 | 41 | 150.0 | ||
| SMART | 385 | 424 | 40 | 4.1E-6 | ||
| Pfam | 390 | 424 | 35 | 3.5E-4 | ||
| ProSiteProfiles | 392 | 425 | 34 | 12.981 | ||
| ProSitePatterns | 411 | 425 | 15 | - | ||
| MobiDBLite | 429 | 450 | 22 | - | – | |
| MobiDBLite | 434 | 450 | 17 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Anaphase-promoting complex binding | Interacting selectively and non-covalently with an anaphase-promoting complex. A ubiquitin ligase complex that degrades mitotic cyclins and anaphase inhibitory protein, thereby triggering sister chromatid separation and exit from mitosis. | ||
| Molecular function | Ubiquitin-protein transferase activator activity | Increases the activity of a ubiquitin-protein transferase, an enzyme that catalyzes the covalent attachment of ubiquitin to lysine in a substrate protein. | ||
| Biological process | Positive regulation of ubiquitin protein ligase activity | Any process that activates or increases the frequency, rate or extent of ubiquitin protein ligase activity. |
Expression pattern of LotjaGi3g1v0220800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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