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LotjaGi3g1v0234200.1

Overview

Field Value
Gene ID LotjaGi3g1v0234200
Transcript ID LotjaGi3g1v0234200.1
Lotus japonicus genome version Gifu v1.2
Description Histone H2A; TAIR: AT1G51060.1 histone H2A 10; Swiss-Prot: sp|Q9C681|H2A1_ARATH Probable histone H2A.1; TrEMBL-Plants: tr|A0A1J7HRN0|A0A1J7HRN0_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0234200
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:37102901..37104519) extracted from Lotus japonicus Gifu genome v1.2.

CATATACACTTCCTTCATTGCTGTTCTCTCTGTGATTCGAACTCATCAGTTTCTTCCCTACTCAAACCGCTTCACCCTCT TCGAATTCCGCGATTGTTCATCAACAATGGCAGGTCGAGGCAAAACCCTAGGATCCAGCGCCGCCAAGAAGGCTACCTCA CGGAGCAGCAAAGCCGGCCTCCAATTCCCCGTCGGCCGTATCGCCCGGTTCCTCAAGGCCGGCAAATACGCCGAGCGTGT CGGCGCCGGCGCCCCCGTCTACCTCGCCGCCGTCCTTGAATATCTCGCCGCTGAGGTAATTCCCTTCCACCGCTGTCAAT TTCTCCCGATTCGCCATTCTCGTCAGATCTAGGGTTTTCAATTAGGTTTTATTTTCCCAATTTTATACTGTTAATTCGAA TAATTCATCGTTTGTAACGGAATCGTAATGAATTAAACAAATATTTTTGATTTCTGAAAGTGAATTTTACTCGATTTTGT TCTTCAATTTAACGAATTTTTCAATTTGAATTTTTTCCAGGTTCTTGAATTGGCTGGAAACGCTGCAAGGGATAACAAGA AGACTAGAATTGTGCCTCGCCATATCCAATTGGCAGTGAGGAATGATGAAGAATTGAGCAAGCTTCTGGGAGATGTGACT ATTGCTAATGGCGGTGTGATGCCCAACATCCACAACCTCTTGCTCCCCAAGAAGGCTGGTGGGTCTAAAGCCGCTGCTGC TGATGATGAATAGACGATGCTGCTGCTGATGAATCATGAACTGCGATTGAATTTGATGACTTTAGTTTTTTTAATTTGCC CCTTTTGGTTGTTAGGTTCGAACACTGGTTGATCAATGTGGTTTCTAGTTGAAGTTAGGTTTTCTGTTAGGTGTTGTGAA TATAAATTATATTCAGTTTGCTTCCTATTAAGATGGTGTTCTAATTTTATATAAATTTCCCCCCTTTAAAATTGATTAGA TACTTGATATCTAGTTAGATTTTCTGACGCTCAATATTTTCATTGTTATCTATTCCATTGCATTTGTTCTAAAATTGGAA TGGTGATGATATATGCTGTATTTTTACTACTTTGGACTGGTGAATTAGTGCAGAGAGCTTCAAGTAGATTCTGTTTTATT ACTACTTTGTATAGGTGAATTAGTGCAGAGAGCTTAATATACAACATAGATTCTTCAATGTTGGGGTTGTTGTTGGTTGT TTATGTTCGTTCTGTTTAATTCCCTTGGTTACATCATGTTTCTGTAACTATGGGCCCGTTTGGAAAAACAGCTTAATTAA GTGTTTATTTATAAGCTATTTTTAAAAATTTATTGAAATAAATTAAAAATAAGCTGTATATAAGCATAAGTTGTTTTTCA TAAGCTATCCTGAGTAGCTTATGAAAATAAGCTGAAAATAGCTTATGGTAGACCATAAGCTGTTTGCATAAGCCCTCTCA AACACTGGCATAAGAGTTTATGCTGTCAGATAAGCTCAAATAAGCTCTTCCAACCTGGGCCTATATTTGGGATAACAGTC TGCGTTTGGTTTTGTAGATTTTAATAACTTGCTTCGATTGATAGTGCCAAATCTAAATTATACGACTGTTGAGTATTGTT TAATATGACTTTGATTTGC
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0234200.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCAGGTCGAGGCAAAACCCTAGGATCCAGCGCCGCCAAGAAGGCTACCTCACGGAGCAGCAAAGCCGGCCTCCAATT CCCCGTCGGCCGTATCGCCCGGTTCCTCAAGGCCGGCAAATACGCCGAGCGTGTCGGCGCCGGCGCCCCCGTCTACCTCG CCGCCGTCCTTGAATATCTCGCCGCTGAGGTTCTTGAATTGGCTGGAAACGCTGCAAGGGATAACAAGAAGACTAGAATT GTGCCTCGCCATATCCAATTGGCAGTGAGGAATGATGAAGAATTGAGCAAGCTTCTGGGAGATGTGACTATTGCTAATGG CGGTGTGATGCCCAACATCCACAACCTCTTGCTCCCCAAGAAGGCTGGTGGGTCTAAAGCCGCTGCTGCTGATGATGAAT AG
Download CDS Sequence

Protein sequence (LotjaGi3g1v0234200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAGRGKTLGSSAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRI VPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKAGGSKAAAADDE
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR23430
1 132 132 1.1E-82 –
MobiDBLite
mobidb-lite
1 23 23 - –
PANTHER
PTHR23430:SF233
1 132 132 1.1E-82 –
Gene3D
G3DSA:1.10.20.10
1 130 130 1.3E-62
IPR009072
SMART
SM00414
4 124 121 7.2E-76
IPR002119
CDD
cd00074
9 119 111 7.65101E-68
IPR002119
SUPERFAMILY
SSF47113
10 122 113 5.39E-44
IPR009072
Pfam
PF00125
10 90 81 1.4E-14
IPR007125
PRINTS
PR00620
15 37 23 4.6E-53
IPR002119
ProSitePatterns
PS00046
23 29 7 -
IPR032458
PRINTS
PR00620
44 59 16 4.6E-53
IPR002119
PRINTS
PR00620
59 72 14 4.6E-53
IPR002119
PRINTS
PR00620
73 87 15 4.6E-53
IPR002119
Pfam
PF16211
93 126 34 1.7E-18
IPR032454
PRINTS
PR00620
101 119 19 4.6E-53
IPR002119

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000786
Cellular component Nucleosome A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures.
Subterm of
Part of
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0046982
Molecular function Protein heterodimerization activity Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0234200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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