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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0254300 |
| Transcript ID | LotjaGi3g1v0254300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cysteine protease, putative; TAIR: AT5G45890.1 senescence-associated gene 12; Swiss-Prot: sp|A2XQE8|SAG39_ORYSI Senescence-specific cysteine protease SAG39; TrEMBL-Plants: tr|A4PIZ3|A4PIZ3_LOTJA Cysteine proteinase; Found in the gene: LotjaGi3g1v0254300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:43160081..43161221) extracted from Lotus japonicus Gifu genome v1.2.
GCTTCTTCCACTAGACAAAAGCAGTACATATTAGCTCTCTTCCTTCTTCTTGCAGTTGGGATTTCCCGGGTAATCTCCCG CGAGCTGCACGAGACCGAGACATCCTTAATAGAAAGACACGAGCAATGGATGGCAAAATATGACAAAGTGTATAAGGATG CGGCTGAGAAGGAAAAACGTTTCTTGATATTCAAGGACAATGTGGAGTTCATTGAATCATTCAATGCTGCTGGAAACAAA CCTTACAAGCTCGGCGTTAATCACCTTGCTGATTTAACAATTGAGGAGTTCAAGGCTTCGCGTAACGGATTGAAGAGGTC CTATGACTATGAGGTTGGGACAACATCATTTAAGTATGAAAATGTGACTGCTATTCCTGCAAGTGTAGACTGGAGGAAAA AAGGAGCTGTTACTCCAATCAAGGACCAAGGTCAATGTGGTAAGATAACAAACATCATATACATATATGTAATTTTTTAA TGTGATTCAGTTTCATTGTGTGGAAACAAATTGGACTAATGTTTACTTAATTTTGTTTTGTTAATTTGAAAAACAAGGGA GTTGCTGGGCATTTTCAACCGTGGCCGCAACCGAGGGTATCCACAAAATCTCTACTGGAAAGTTGGTCTCTCTATCAGAA CAAGAGCTAGTGGATTGTGACAGAAAAGGTACAGACCAAGGCTGTGAAGGAGGATACATGGAAGATGGCTTTGAGTTCAT TATAAAAAATGGTGGAATTACCACTGAGGCTAATTACCCCTATAAGGCAGTTGATGGGAGTTGTAAAAATGCAACTGCAC CTGCAGCTCAAATTAAAGGGTATGAGAAAGTCCCAGTTAATAGCGAGAAGGCACTCTTGAAAGCGGTTGCTAACCAACCT GTGTCAGTTTCAATTGATGCAGCTGATGGAAGTTTCATGTTTTACTCAAGTGGGATATTTACAGGAGAATGTGGAACTGA GCTAGACCATGGTGTTACAGCAGTTGGTTATGGAAGAGCTAATGGTACTGATTATTGGATAGTGAAGAATTCATGGGGTA CAGTGTGGGGTGAGCAAGGATACATAAGGATGCAGCGAGGCATAGCTGCAAAGGAAGGTTTATGTGGAATTGCTATGGAT TCCTCTTATCCAACTGCTTAA
CDS sequence (LotjaGi3g1v0254300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAAAATATGACAAAGTGTATAAGGATGCGGCTGAGAAGGAAAAACGTTTCTTGATATTCAAGGACAATGTGGAGTT CATTGAATCATTCAATGCTGCTGGAAACAAACCTTACAAGCTCGGCGTTAATCACCTTGCTGATTTAACAATTGAGGAGT TCAAGGCTTCGCGTAACGGATTGAAGAGGTCCTATGACTATGAGGTTGGGACAACATCATTTAAGTATGAAAATGTGACT GCTATTCCTGCAAGTGTAGACTGGAGGAAAAAAGGAGCTGTTACTCCAATCAAGGACCAAGGTCAATGTGGGAGTTGCTG GGCATTTTCAACCGTGGCCGCAACCGAGGGTATCCACAAAATCTCTACTGGAAAGTTGGTCTCTCTATCAGAACAAGAGC TAGTGGATTGTGACAGAAAAGGTACAGACCAAGGCTGTGAAGGAGGATACATGGAAGATGGCTTTGAGTTCATTATAAAA AATGGTGGAATTACCACTGAGGCTAATTACCCCTATAAGGCAGTTGATGGGAGTTGTAAAAATGCAACTGCACCTGCAGC TCAAATTAAAGGGTATGAGAAAGTCCCAGTTAATAGCGAGAAGGCACTCTTGAAAGCGGTTGCTAACCAACCTGTGTCAG TTTCAATTGATGCAGCTGATGGAAGTTTCATGTTTTACTCAAGTGGGATATTTACAGGAGAATGTGGAACTGAGCTAGAC CATGGTGTTACAGCAGTTGGTTATGGAAGAGCTAATGGTACTGATTATTGGATAGTGAAGAATTCATGGGGTACAGTGTG GGGTGAGCAAGGATACATAAGGATGCAGCGAGGCATAGCTGCAAAGGAAGGTTTATGTGGAATTGCTATGGATTCCTCTT ATCCAACTGCTTAA
Protein sequence (LotjaGi3g1v0254300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAKYDKVYKDAAEKEKRFLIFKDNVEFIESFNAAGNKPYKLGVNHLADLTIEEFKASRNGLKRSYDYEVGTTSFKYENVT AIPASVDWRKKGAVTPIKDQGQCGSCWAFSTVAATEGIHKISTGKLVSLSEQELVDCDRKGTDQGCEGGYMEDGFEFIIK NGGITTEANYPYKAVDGSCKNATAPAAQIKGYEKVPVNSEKALLKAVANQPVSVSIDAADGSFMFYSSGIFTGECGTELD HGVTAVGYGRANGTDYWIVKNSWGTVWGEQGYIRMQRGIAAKEGLCGIAMDSSYPTA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 296 | 296 | 1.1E-137 | – | |
| Gene3D | 1 | 297 | 297 | 4.6E-118 | – | |
| PANTHER | 1 | 296 | 296 | 1.1E-137 | – | |
| SUPERFAMILY | 1 | 296 | 296 | 6.44E-110 | ||
| SMART | 1 | 54 | 54 | 5.9E-20 | ||
| Pfam | 1 | 54 | 54 | 1.2E-15 | ||
| SMART | 82 | 296 | 215 | 3.1E-123 | ||
| Pfam | 82 | 295 | 214 | 6.7E-83 | ||
| CDD | 83 | 295 | 213 | 1.3072E-115 | ||
| PRINTS | 100 | 115 | 16 | 4.9E-10 | ||
| ProSitePatterns | 100 | 111 | 12 | - | ||
| ProSitePatterns | 239 | 249 | 11 | - | ||
| PRINTS | 241 | 251 | 11 | 4.9E-10 | ||
| PRINTS | 256 | 262 | 7 | 4.9E-10 | ||
| ProSitePatterns | 256 | 275 | 20 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Proteolysis | The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. | ||
| Molecular function | Cysteine-type peptidase activity | Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile. |
Expression pattern of LotjaGi3g1v0254300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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