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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0259700 |
| Transcript ID | LotjaGi3g1v0259700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Chromo domain-containing protein LHP1; TAIR: AT5G17690.1 like heterochromatin protein (LHP1); Swiss-Prot: sp|Q946J8|LHP1_ARATH Chromo domain-containing protein LHP1; TrEMBL-Plants: tr|A0A0R0FVG1|A0A0R0FVG1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0259700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:47421815..47428561) extracted from Lotus japonicus Gifu genome v1.2.
GAATAAAGGGAGAATTTTTTTATAAACCCCAATAAAAAAAAATGGACCCAAAAGGAAAGGATTTTTGCATAGATTGACAA CTCACTTCTAAAAGGTCACAACATTTCACCTTTGATGTTGGTGCTGTGCATTTCCCTCTGATTTCTGCTCCTTCTTGTTA CTGTTTCTCGCTGACATGAAAGGTGTAGGGAAGAGGAGGACAACCTCGGAAACGTCGAACGATGCTGCTGGTGCTGTCGA TTTCGGTGTTGTAGATGGAGGCGGAGGCGGAAGCGGAAGCGGAAGCGGAGGAGGAGGAGGAGGGTATGCTGCAGATGGTG CTTCTTTTGCTGAAGGAGAGCATACCCAGTTGCAGAAAGGGGAAGCGGAGCAACCCCGTGTGGAAGATTCGGAAGAAGAA GCTGCAGATTATGATGATGATGAAGAAGAAGAAGAAGAGGAGGAGGAAGAAGATGAGCATGCAGATCGGGTTGCAGTGTC TGGACCGGGAAAGGGTCCCATTCTCCGTGAAGGTTTCTATGAAGTTGAAGCTATACGTCGTAAGAGGATTCGTAGGGTAA AGTTTCTTCCTTTCTTCTTCTTCTTTCGTCATGGGGTTTATCTTGCTCTTGTTTTTCTTCTTCTTTTTCTCAGTGCTTTT TGCTTATCTCAGAGTTTTTTTTAGCATGTGGGGAATTGTTTTTGGGTTATTTGTTTGTCCTATTTCATCCTTGGCCTGAC TGTGTTTGTTTTTTCTTTTTCTTCTTTATGACAATGTGGATTTCAAATGTTGCAAATACAGGGTCAGCCGCAGTACTTAA TCAAATGGTGAGTGCCCCCTTTTGCTGCATTGTCTTTTGTTGGTATTGATTGATTGGGTTTGTGACAAAACTCGACTGTG AATTTTTATATAAACATTTTTATGTATTTATTGATTTGTTTGTTTGTTTATTTATTGCTGAAGGCGTGATTGGTCAGAGG GATCCAATACTTGGGAGCCTCTAGAAAATCTTGCGAGTGTTCCTGATGTTGTTGCTGCTTTCGAGGCTAGGTATTCCCTT TTTCTTCCCTGAAATCGTGGCATTTTTGTTTGGACCTGTGTCAATTTAAGGGTGGGTGCGTGTGTGTTTGTGTGTTAGTT GCATTCACTGTGAACCATCTTTCATTTCTCATCTCAATCCATAACAAGAGTTTGTTTACTTTTTATCTTGAAGTCTGTGT TAATGTATGTTTGTAATGGTGCTCACGGATATCCAAACATAGCCTAAATGTGTAAAGGTGCATTCGAATTTATGTATCTT TTTTTATTAGTTTTGTGTTTGCTGTGATTACTAATGGGCTGTGTATAAGCATAGGTCTATGGCTGTAATTTAAAGATAGT GGATGGATTTTTTGACTGCATAGTTTAACTGGTTTGTTTACAAATATTTTTTCTTCATGGTTTTGAAGCTTGAGATCAGC AAAGAGAAAGCGCAAACGCAAGCATGCGGTTCATCACATTCAGCCTAAGAAGAGGCTGGAGCGTTCTGCCACTCCTTACA GCCTCAGACAATTTCCGGCAAATACACCTGACAACCACCACACACAGTCTGCCCCTCTCAACGATATTAGTATTCCTGAT ATTCCTGCCTTTCCCCAGACTGTGCTTTTTGCGGATGAAGTTGAAAATAATGGTGATGCCAGCAGTCTCGGAAACTCTAA TCATGCTCATGGTAATAGGTCTGCCGATGCTCCAGAAGCAGTTGTTGAAAGGAATGAGGAAAATGATTATGATCCTAAGC TTAGCGAACTTAGAGCTACGACCACCAACGGGTATGAAGGAGAAAACCTCGCAACACAGTTTCAAGAAACTCAACATTCA GTAGGAACTCGTCATGTTGATGGTCAACTAAATGGGGATTGCACAGAACCTGGTCAAAGTGGCCGCTGCAGAGGAGCTAA ACGGAGAAAATCTGGTTCTGTTAAGAGGTTCAATAGAGATTCATATGCTGGTGACGAACCCGTTAATACTCAAAGACCAG TTGACGTATCTGCTGTTACAACTGAACAAGTACAAACAGGGGCTGCTGATAATGCGGGTCCAAATGGCCATAAGAGGACG AATCACGCTAGACCTGCCTGCACTATTGTCAAGATTATTAAGCCAGTACGCTATTCAGCTGCAGTAGCTAGCAGCATGCA GGATGCTTCAGTAACCTTCGTCGCTTTGAGGTTAGTTACTCAACTGACAAATGTAAATTTAATTGCTGTGCATTTGTTTT TACAGTATGCTTGCCAAGATAAGTTGATGTTCTACTTCTTTGTTTGAAGAATTTTGTTTTCCTGTGATTTAGTTGCTCTG TATAGAAATGAAGAATGATAGTCTGATACATATTTCCACTCATCAATAATAATTAATGAGAGCATTGGTTCATGAAATTA ATTTTCATGGTTATTCCTGTCCTTTATTATTATATGTTGGAGAGAGACAGTTTATCAAGCTGCTGTTAATAAATGAAACC AGCCGTGGAATATGCAACATCATTTATATACTTCTTATATTTTAATTGATTGAAAACAAATTTTTATGATTAATATAGAG TGAAGTTCTAATGTGTCTTTAAATTTATTTTATGAATGAAGCTTCATTCTTTTTTGTTTCCTTTCTACAAATTGAAGCTT GAAATTATTATGCCTTTAGTAGGTGATTTTCTTTTCCTTGGTTAACAAATGGAAATGGTTCTTAATTCTTGATAATGAGA AGGGGAAATTTAATTGAATTGAGAAACTGAGATGTCCTCAATTCCTGTGAGAGCCAGGTAATGCAACTGAAACCAACACT CCGGCACCTCAACAGTTTGTGCTTCATAGCTCTCTGATAAATTTCTATTATGGCATCTAGTGTTTGTTTCCAATTCTAAA CCATGGCTTCCAAAGCTTTTCCTCTTCCTCTTTTCCCACCTTGCAAAAAGCCTACATCCTTAAATCTGCAACAACCACTG ACAAACCCCTCTTCTATGGAGGTTGTTCTTGCTTCAGTACCAGGCACAATTTCACTCTTCATTTTTGTAGAGCTTTTTAA GAAGAAGTTCCTCTTGTGGAAGCACAGAAGCAACAAGGTGAACTAGTTACTGATAAGGATTGACATCTTGTGAATTTCAT TGTGAATCCAATAATTCCACTGTGATTTTTTATTTATGAGGATTGAGATCTTGGAAAGGTGAACATTGCCTATTCTGTTT AATTCAACAAGATTAGTTGCTGCTTTATTGGTGACAATAATTGTAATGGTGCTCCATTCTCACTTGTGTCACTGGACGTA TTAGAATTTGGATTCAGCCCGATTCAACCCCAAAAGCTAGCTCGTAAGGGGAGGATTGTCAAAGCTTTTATGAGGATTGT TTGGCCATATTTCTAGTTGATGTGGGATCTTAAGTCTTAACACAGGCCATTTGCAATCAGGACTGGATATCTGGTGTGCG CAGTCTGTGGAATTGACGACTGTAATGCAGGGAGTCTAAGGTAGCCGCAATGAAGGTGGAAATGTAGGGGGTGGGGGTGG CTGCAATGAATGTGGCTAAGGATTTGCAATGAAATATAAATTTAGGTCTGATATGAGATAGATCTAGGGAAAACTCTGAT ACAATGTCAGGATTTTGGCTTGACTTAACTCGAAAAGCTATCTTGTAAGGTGAGGATGGCCAAAGCCTTTACCAGGACAA TTTTGACCATATCTCTAGTCAATATGGGATTTTAAGTCTTAACAGGATCCGTGCATTCTTGGCCGTTGTGGTATCTAGGC CACAACTATTATCATGCCCATGCTTATGCAAAGGTTTGCCAACTTCACACTGAACTTCTCAACATGACGAGAGGAGATCA AGCCATTTCTTAGTTTCTGCCTGCTTATCTCCATTGTTGACCCTGCTTTAGCTCAAGAACAGCAGGATATCATTATCAAA GGATTACTAGGAGAATATATTGCCTAAATCACCCTGGTTAGCAGCAAATATGAACCTTTTCAAGTTGTAAAAGTTGAAGC CCTTCTCACTCAAGAAGCCGGAATTGAAAAGGTGTAAATGCCTCAGTCTCAGCCAAGGTGCTCCCACTGACAATTCTGCG CTACAGTGTTCAATAATCAATCCTCCTCAAGCTGATGTTGCGGAAACAATACCTTCTGCGCCCTCTCCGTCAAATTATGT ACTATGTTTTGGTGGAGGTAGAAGTAATAGATTTCGTAGAAACCATGGCAGAGGTGGTCACGATTCAATTCAATGTCAAG TCCCTTAGCACCAAATTCCGTCTAGTACCTGTACTATGAAGTTGATGATTCGTAACGGACTAATTTGGTGACGTTTTGTA TCTTGAGGGAATAAATTAGTGACCAAATTTTTAGGAAGGCTAATATAGGAAAACGTAAAATTGGAGATCAACTTGAGAGT TTACTCAAAATGTAATATGTACAAAAAAATGAGGATGCTAATGTATTCTCAGCAAAGACACAAATGTATTCTTTAGTAGC TGTCAACTTTACTAAAACTCTGATTATATATTAAAATATAATTTTAAGTTGTATATTTAGTACGAAAATAGTTCTTTTAG AAGTCATAACTTTGGATACCAAAAAATTGATATAAACATTTACAGCCTTGTTTCATGCAATTTTTTCCTGTAATACAATA AAAGCCTTTCCTCACTCGTATAGTTGGTGGCATATATGAGTCAAACAATGCCATTGTTTTTCATAAAAAACAAGGTTTCC GGATAGGCTATTTAGATGATGATTTTTTTTAAAATGGTTTCTCATAGGTTTTCTTTGGTTTTCCCTATCTCTGTTTCTTG GATCATTATGCTCCATTTGATAACTTCTCTTATTGGGGCCCTAAGTAGCAGACATAAGTAGGTCTAGCATTTTGCTGCAA ACCCTTGATTGTGTTTTTTACTCATAACAGGGAAGTGATATGGTAACTGGAGAAGAAATGTATAGGAACAAAGCAAGTTT TGAATGTTTTCATTTATATTTTGTATCTAATGAGGCTATGACAGCCTATCTACAGTTCAATTTTGTTATGTAATTTTATT CCTCAATTTGTACTTTTACGCTTCTTGTGTTGAATGAGCTGGATTATTTTATAATCTTGCAACATGATTATTCTCATAAA GCTTATCTGGTTAACTTTATAGGTCGGATGGAACAGAAGTGTTGGTTGATAACACATATCTCAAGGCATACTATCCCATT CTGGTAATCCTCATATCTTACTCTTTTGAGTGTCATTTTAGAAGAAAACTTTTGTTCTGATATATCTACCTGTTAATTTA GAAGTTCAAGTCTTCAAGATGTGGTTGATTTTATTTTGTCAATTATACCCTTCATCTAATTAATAATTTAGAGACAGAAT TGTGGAGGTACATGCTTCATTTCCCTTAAGCAAGATCTAGAGTTCAAGTCTTGTGTGTGGGGAAAAAAAGTCTGCTGGAA GAGTTAGCCCCACGGTGATGTGAATGTTCCCGGCTCGATCAAAATTGCCTCCTGTAGAGAATACCCGTGTTAGGAAGTTA GGCAACAAACGATGACATTAATTTTTTTTAAACAACGCAGGAATATAGACTGTTGAATTTGATTATTTCGGTGTCAATTT TGCATGGCTTAGATGGCTTATTCTATTATGCTTCCATTGCCATTTTTTCACCTGAAGCTGATGTTTTTCCTTATGTTCCA GCTAATCAATTACTACGAGCAGCATCTCCGCTACACTCCTGAACATTACTGAACAGATAGATTATTGGAGCTTCCTATGT GTAGTTAGATTTTCATGTGTTCCCTAGAAGTGTTGTAGAATGTGGTGCTTTTGTAGATGAAGATAGTCAAGGGTAAGGAA TGCATTGTTTGGTAGTGATAGGTATATTGCGATTTAACCAGTAGTTTATGGTTTACATACTGTGATGCATGCTGATCCAT GATCTGTTGAGGACGGGACAAAACTGGATATTTTCAATGCCTCAGACACATGAGGTAGAGGATTGGTTTATTTAAAAGTT TATCAGGGGCAACACTCTCTTTTGAACTGAATCGAAGTTTATGGAAGTTCTTGTGAGTAATTTACTTTTGCATACCATAT TTTGGGTACTCTTTGGTCTATTGACTTGTTGATTCCAACTATGTAAGGGAAAATTCACAACTGTTAAGATGCATGGTACC TTTTAAATTGAAATTGCATGCGATACCAATTATCTTCCTTGAAAGGAGGGCTTTTAATCTTTGATCTTAGGCCTGTTTGA AGTAATAGTAAGTTTTCAAATTTTTAGGTTGACTCGATTTTAAAATGATTTTAGCTAACTTTTCAAAATAAATACATGCC ACACCAATGTCCTTATCAACATTGTAATTCTACATTTCTTTCCTCCACCACCATTGCTATTATTGCATGCACCCTAAACG TCCAATATCAGACACCCTTCATTGCCATTGTAGCCTGACACTGTCAATCACGGTAGCTGATGCCACCATTGTCATTTGGC ATTGTTCGTCTGACACCTTTCGTTACCTCCTCCATGACTAATATCCTTTAATGCAATGCCAATGCCATCCCATTTTTATT TCTCTGTTTTTTTTGCTGATGACATCCTCCTTTTTACTAATGGAATGATTTCTCAAGTTAAAACTATTCATGATACTATT AATATGTTCTGTAAAGTGTTCGGGCTTAAGGTCAATATCTGTAAATCTAAGGCTCCAGCAGTTGTTAATGCTCCTAGATC AAATAAGGAAAATATATTTGCCATAAC
CDS sequence (LotjaGi3g1v0259700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAAGGTGTAGGGAAGAGGAGGACAACCTCGGAAACGTCGAACGATGCTGCTGGTGCTGTCGATTTCGGTGTTGTAGA TGGAGGCGGAGGCGGAAGCGGAAGCGGAAGCGGAGGAGGAGGAGGAGGGTATGCTGCAGATGGTGCTTCTTTTGCTGAAG GAGAGCATACCCAGTTGCAGAAAGGGGAAGCGGAGCAACCCCGTGTGGAAGATTCGGAAGAAGAAGCTGCAGATTATGAT GATGATGAAGAAGAAGAAGAAGAGGAGGAGGAAGAAGATGAGCATGCAGATCGGGTTGCAGTGTCTGGACCGGGAAAGGG TCCCATTCTCCGTGAAGGTTTCTATGAAGTTGAAGCTATACGTCGTAAGAGGATTCGTAGGGGTCAGCCGCAGTACTTAA TCAAATGGCGTGATTGGTCAGAGGGATCCAATACTTGGGAGCCTCTAGAAAATCTTGCGAGTGTTCCTGATGTTGTTGCT GCTTTCGAGGCTAGCTTGAGATCAGCAAAGAGAAAGCGCAAACGCAAGCATGCGGTTCATCACATTCAGCCTAAGAAGAG GCTGGAGCGTTCTGCCACTCCTTACAGCCTCAGACAATTTCCGGCAAATACACCTGACAACCACCACACACAGTCTGCCC CTCTCAACGATATTAGTATTCCTGATATTCCTGCCTTTCCCCAGACTGTGCTTTTTGCGGATGAAGTTGAAAATAATGGT GATGCCAGCAGTCTCGGAAACTCTAATCATGCTCATGGTAATAGGTCTGCCGATGCTCCAGAAGCAGTTGTTGAAAGGAA TGAGGAAAATGATTATGATCCTAAGCTTAGCGAACTTAGAGCTACGACCACCAACGGGTATGAAGGAGAAAACCTCGCAA CACAGTTTCAAGAAACTCAACATTCAGTAGGAACTCGTCATGTTGATGGTCAACTAAATGGGGATTGCACAGAACCTGGT CAAAGTGGCCGCTGCAGAGGAGCTAAACGGAGAAAATCTGGTTCTGTTAAGAGGTTCAATAGAGATTCATATGCTGGTGA CGAACCCGTTAATACTCAAAGACCAGTTGACGTATCTGCTGTTACAACTGAACAAGTACAAACAGGGGCTGCTGATAATG CGGGTCCAAATGGCCATAAGAGGACGAATCACGCTAGACCTGCCTGCACTATTGTCAAGATTATTAAGCCAGTACGCTAT TCAGCTGCAGTAGCTAGCAGCATGCAGGATGCTTCAGTAACCTTCGTCGCTTTGAGGTCGGATGGAACAGAAGTGTTGGT TGATAACACATATCTCAAGGCATACTATCCCATTCTGCTAATCAATTACTACGAGCAGCATCTCCGCTACACTCCTGAAC ATTACTGA
Protein sequence (LotjaGi3g1v0259700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKGVGKRRTTSETSNDAAGAVDFGVVDGGGGGSGSGSGGGGGGYAADGASFAEGEHTQLQKGEAEQPRVEDSEEEAADYD DDEEEEEEEEEEDEHADRVAVSGPGKGPILREGFYEVEAIRRKRIRRGQPQYLIKWRDWSEGSNTWEPLENLASVPDVVA AFEASLRSAKRKRKRKHAVHHIQPKKRLERSATPYSLRQFPANTPDNHHTQSAPLNDISIPDIPAFPQTVLFADEVENNG DASSLGNSNHAHGNRSADAPEAVVERNEENDYDPKLSELRATTTNGYEGENLATQFQETQHSVGTRHVDGQLNGDCTEPG QSGRCRGAKRRKSGSVKRFNRDSYAGDEPVNTQRPVDVSAVTTEQVQTGAADNAGPNGHKRTNHARPACTIVKIIKPVRY SAAVASSMQDASVTFVALRSDGTEVLVDNTYLKAYYPILLINYYEQHLRYTPEHY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 108 | 108 | - | – | |
| PANTHER | 30 | 453 | 424 | 8.9E-128 | – | |
| MobiDBLite | 69 | 95 | 27 | - | – | |
| Coils | 69 | 92 | 24 | - | – | |
| SUPERFAMILY | 101 | 170 | 70 | 3.82E-17 | ||
| Gene3D | 110 | 180 | 71 | 1.1E-20 | – | |
| SMART | 114 | 167 | 54 | 2.3E-14 | ||
| ProSiteProfiles | 115 | 174 | 60 | 16.594 | ||
| Pfam | 115 | 163 | 49 | 1.0E-12 | ||
| CDD | 115 | 164 | 50 | 1.45013E-20 | – | |
| ProSitePatterns | 132 | 152 | 21 | - | ||
| MobiDBLite | 170 | 220 | 51 | - | – | |
| MobiDBLite | 170 | 184 | 15 | - | – | |
| MobiDBLite | 196 | 217 | 22 | - | – | |
| MobiDBLite | 238 | 278 | 41 | - | – | |
| MobiDBLite | 240 | 254 | 15 | - | – | |
| MobiDBLite | 259 | 276 | 18 | - | – | |
| MobiDBLite | 310 | 355 | 46 | - | – | |
| SMART | 380 | 453 | 74 | 1.2E-4 | ||
| CDD | 399 | 448 | 50 | 4.33285E-19 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. |
Expression pattern of LotjaGi3g1v0259700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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