Domain Predictions — View

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PS50013

Source: ProSiteProfiles

Description

Chromo and chromo shadow domain profile.

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 51

Transcript	Name	Description	Predicted domains	Domain count
Lj0g3v0024609.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: DNA (cytosine-5)-methyltransferase CMT2-like [Cicer arietinum] gi\|502154028\|ref\|XP_004509555.1\|	Domains G3DSA:2.40.50.40 G3DSA:3.40.50.150 IPR000953 IPR001025 IPR016197 IPR023780 IPR029063 NON_CYTOPLASMIC_DOMAIN PF00385 PF01426 PS50013 PS51038 PTHR10629 PTHR10629:SF34 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SM00298 SM00439 SSF53335 SSF54160 SignalP-TM_GRAM_POSITIVE cd00024 mobidb-lite	25
Lj0g3v0024609.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: DNA (cytosine-5)-methyltransferase CMT2-like [Cicer arietinum] gi\|502154028\|ref\|XP_004509555.1\|	Domains G3DSA:2.40.50.40 G3DSA:3.40.50.150 G3DSA:3.90.120.10 IPR000953 IPR001025 IPR001525 IPR016197 IPR018117 IPR023780 IPR029063 NON_CYTOPLASMIC_DOMAIN PF00145 PF00385 PF01426 PR00105 PS00094 PS50013 PS51038 PS51679 PTHR10629 PTHR10629:SF34 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SM00298 SM00439 SSF53335 SSF54160 SignalP-TM_GRAM_POSITIVE TIGR00675 cd00024 mobidb-lite	33
Lj0g3v0041269.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: chromo domain-containing protein LHP1-like [Glycine max] gi\|356560656\|ref\|XP_003548606.1\|	Domains G3DSA:2.40.50.40 IPR000953 IPR008251 IPR016197 IPR023779 IPR023780 PF00385 PS00598 PS50013 PTHR22812 SM00298 SM00300 SSF54160 cd00024 mobidb-lite	15
Lj0g3v0060019.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial-like [Solanum lycopersicum] gi\|460387771\|ref\|XP_004239547.1\|	Domains G3DSA:2.40.50.40 IPR000953 IPR016197 IPR023780 PF00385 PS50013 SSF54160 cd00024	8
Lj0g3v0238439.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Ty3-gypsy retrotransposon protein [Cucumis melo subsp]. melo] gi\|307135885\|gb\|ADN33750.1\|	Domains G3DSA:2.40.50.40 IPR000953 IPR016197 IPR023780 PF00385 PS50013 SSF54160 cd00024	8
Lj1g3v0129730.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: LOW QUALITY PROTEIN: serine/threonine-protein phosphatase 4 regulatory subunit 3-like [Cucumis sativus] gi\|449529986\|ref\|XP_004171978.1\|	Domains G3DSA:2.40.50.40 IPR000953 IPR016197 IPR023780 PF00385 PS50013 SSF54160 cd00024	8
Lj1g3v1290440.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: DNA (cytosine-5)-methyltransferase CMT3-like isoform X2 [Cicer arietinum] gi\|502164095\|ref\|XP_004513047.1\|	Domains G3DSA:2.40.50.40 G3DSA:3.40.50.150 IPR000953 IPR001025 IPR001525 IPR016197 IPR018117 IPR023779 IPR023780 IPR029063 PF00145 PF00385 PR00105 PS00094 PS00598 PS50013 PS51038 PS51679 PTHR10629 PTHR10629:SF28 SM00298 SSF53335 SSF54160 cd00024 mobidb-lite	25
Lj1g3v1820910.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: CHD3-type chromatin-remodeling factor PICKLE-like isoform X2 [Cicer arietinum] gi\|502132460\|ref\|XP_004501371.1\|	Domains Coil G3DSA:2.40.50.40 G3DSA:3.30.40.10 G3DSA:3.40.50.300 IPR000330 IPR000953 IPR001650 IPR001965 IPR009462 IPR009463 IPR013083 IPR014001 IPR016197 IPR023780 IPR027417 PF00176 PF00271 PF00385 PF06461 PF06465 PS50013 PS51192 PS51194 PTHR10799 PTHR10799:SF741 SM00249 SM00298 SM00487 SM00490 SM01146 SM01147 SSF52540 SSF54160 cd00024 cd00046 cd00079 mobidb-lite	37
Lj1g3v1820910.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: CHD3-type chromatin-remodeling factor PICKLE-like [Glycine max] gi\|356515042\|ref\|XP_003526210.1\|	Domains Coil G3DSA:2.40.50.40 G3DSA:3.30.40.10 G3DSA:3.40.50.300 IPR000330 IPR000953 IPR001650 IPR001965 IPR009462 IPR009463 IPR012957 IPR013083 IPR014001 IPR016197 IPR023780 IPR027417 PF00176 PF00271 PF00385 PF06461 PF06465 PF08074 PS50013 PS51192 PS51194 PTHR10799 PTHR10799:SF741 SM00249 SM00298 SM00487 SM00490 SM01146 SM01147 SSF52540 SSF54160 cd00024 cd00046 cd00079 mobidb-lite	39
Lj1g3v1820910.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: CHD3-type chromatin-remodeling factor PICKLE-like isoform X2 [Cicer arietinum] gi\|502132460\|ref\|XP_004501371.1\|	Domains G3DSA:2.40.50.40 G3DSA:3.30.40.10 G3DSA:3.40.50.300 IPR000330 IPR000953 IPR001650 IPR001965 IPR013083 IPR014001 IPR016197 IPR023780 IPR027417 PF00176 PF00271 PF00385 PS50013 PS51192 PS51194 PTHR10799 PTHR10799:SF741 SM00249 SM00298 SM00487 SM00490 SSF52540 SSF54160 cd00024 cd00046 cd00079	29
Lj1g3v4590860.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: chromodomain-helicase-DNA-binding protein 3-like [Cicer arietinum] gi\|502111276\|ref\|XP_004494007.1\|	Domains Coil G3DSA:2.40.50.40 G3DSA:3.30.40.10 IPR000330 IPR000953 IPR001965 IPR013083 IPR016197 IPR019786 IPR019787 IPR023780 IPR027417 PF00176 PF00385 PS01359 PS50013 PS50016 PTHR10799 PTHR10799:SF620 SM00249 SM00298 SSF52540 SSF54160 cd00024 cd00046 mobidb-lite	26
Lj2g3v0286920.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: flap endonuclease GEN-like 2-like [Cicer arietinum] gi\|502175270\|ref\|XP_004515700.1\|	Domains G3DSA:1.10.150.20 G3DSA:2.40.50.40 G3DSA:3.40.50.1010 IPR000953 IPR006084 IPR006085 IPR006086 IPR016197 IPR020045 IPR029060 PF00752 PF00867 PR00853 PS50013 PTHR11081 PTHR11081:SF17 SM00484 SM00485 SSF47807 SSF54160 SSF88723	21
Lj2g3v1646590.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: DNA (cytosine-5)-methyltransferase 1-like [Glycine max] gi\|356540854\|ref\|XP_003538899.1\|	Domains G3DSA:2.40.50.40 G3DSA:3.40.50.150 IPR000953 IPR001025 IPR001525 IPR016197 IPR023779 IPR023780 IPR029063 PF00145 PF00385 PF01426 PR00105 PS00598 PS50013 PS51038 PS51679 PTHR10629 PTHR10629:SF30 SM00298 SM00439 SSF53335 SSF54160 cd00024 cd04716 mobidb-lite	26
Lj2g3v1646590.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: DNA (cytosine-5)-methyltransferase 1-like [Glycine max] gi\|356495335\|ref\|XP_003516534.1\|	Domains G3DSA:2.40.50.40 G3DSA:3.40.50.150 G3DSA:3.90.120.10 IPR000953 IPR001025 IPR001525 IPR016197 IPR023779 IPR023780 IPR029063 PF00145 PF00385 PF01426 PR00105 PS00598 PS50013 PS51038 PS51679 PTHR10629 PTHR10629:SF30 SM00298 SM00439 SSF53335 SSF54160 TIGR00675 cd00024 cd04716 mobidb-lite	28
Lj2g3v3058550.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: chromodomain-helicase-DNA-binding protein 2-like [Glycine max] gi\|356501409\|ref\|XP_003519517.1\|	Domains CYTOPLASMIC_DOMAIN G3DSA:2.40.50.40 IPR000953 IPR016197 NON_CYTOPLASMIC_DOMAIN PS50013 SSF54160 TRANSMEMBRANE mobidb-lite	9
Lj3g3v3553970.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: signal recognition particle 43 kDa protein, chloroplastic-like [Cicer arietinum] gi\|502144378\|ref\|XP_004505675.1\|	Domains G3DSA:1.25.40.20 G3DSA:2.40.50.40 IPR000953 IPR002110 IPR016197 IPR020683 IPR023780 IPR030300 PF00385 PF13857 PS50013 PS50088 PS50297 PTHR24128 PTHR24128:SF11 SM00248 SM00298 SSF48403 SSF54160 cd00024 cd00204 mobidb-lite	22
Lj3g3v3553980.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: signal recognition particle 43 kDa protein, chloroplastic-like [Glycine max] gi\|356538524\|ref\|XP_003537753.1\|	Domains G3DSA:1.25.40.20 G3DSA:2.40.50.40 IPR000953 IPR002110 IPR016197 IPR020683 IPR023780 IPR030300 PF00385 PF13857 PS50013 PS50088 PS50297 PTHR24128 PTHR24128:SF11 SM00298 SSF48403 SSF54160 cd00024 cd00204 mobidb-lite	21
Lj4g3v0244050.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Chromatin remodeling complex subunit [Theobroma cacao] gi\|508704985\|gb\|EOX96881.1\|	Domains G3DSA:2.40.50.40 G3DSA:3.30.40.10 G3DSA:3.40.50.300 IPR000330 IPR000953 IPR001650 IPR001965 IPR009463 IPR011011 IPR013083 IPR014001 IPR016197 IPR019786 IPR019787 IPR023780 IPR027417 PF00176 PF00271 PF00385 PF00628 PF06465 PS01359 PS50013 PS50016 PS51192 PS51194 PTHR10799 PTHR10799:SF725 SM00249 SM00298 SM00487 SM00490 SM01147 SSF52540 SSF54160 SSF57903 cd00024 cd00046 cd00079 cd11660 cd15532 mobidb-lite	42
Lj4g3v1534990.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Ty3/gypsy retrotransposon protein [Beta vulgaris subsp]. vulgaris] gi\|387965727\|gb\|AFK13856.1\|	Domains Coil G3DSA:2.40.50.40 G3DSA:3.30.420.10 IPR000953 IPR012337 IPR016197 PS50013 PTHR24559 PTHR24559:SF186 SSF53098 SSF54160 cd00024	12
Lj5g3v0735780.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Ty3/gypsy retrotransposon protein [Beta vulgaris subsp]. vulgaris] gi\|387965727\|gb\|AFK13856.1\|	Domains G3DSA:2.40.50.40 IPR000953 IPR016197 IPR023780 PF00385 PS50013 SSF54160 cd00024	8
Lj6g3v1732740.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Ty3/gypsy retrotransposon protein [Beta vulgaris subsp]. vulgaris] gi\|387965727\|gb\|AFK13856.1\|	Domains G3DSA:2.40.50.40 IPR000953 IPR016197 IPR023780 PF00385 PS50013 SSF54160 cd00024	8
Lj6g3v2172020.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial-like [Solanum lycopersicum] gi\|460387771\|ref\|XP_004239547.1\|	Domains CYTOPLASMIC_DOMAIN G3DSA:2.40.50.40 IPR000953 IPR016197 NON_CYTOPLASMIC_DOMAIN PS50013 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SSF54160 SignalP-noTM_EUK TMhelix TRANSMEMBRANE	14
LotjaGi1g1v0048100.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Chromodomain helicase-DNA-binding protein; TAIR: AT2G13370.1 chromatin remodeling 5; Swiss-Prot: sp\|F4IV99\|CHR5_ARATH Protein CHROMATIN REMODELING 5; TrEMBL-Plants: tr\|I1JIZ0\|I1JIZ0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0048100	Domains Coil G3DSA:1.10.10.60 G3DSA:2.40.50.40 G3DSA:3.40.50.10810 G3DSA:3.40.50.300 IPR000330 IPR000953 IPR001650 IPR014001 IPR016197 IPR023780 IPR025260 IPR027417 IPR038718 PF00176 PF00271 PF00385 PF13907 PS50013 PS51192 PS51194 PTHR45623 PTHR45623:SF14 SM00298 SM00487 SM00490 SM01176 SSF52540 SSF54160 cd17993 cd18659 cd18660 cd18793 mobidb-lite	34
LotjaGi1g1v0048100.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Chromodomain helicase-DNA-binding protein; TAIR: AT2G13370.1 chromatin remodeling 5; Swiss-Prot: sp\|F4IV99\|CHR5_ARATH Protein CHROMATIN REMODELING 5; TrEMBL-Plants: tr\|I1JIZ0\|I1JIZ0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0048100	Domains Coil G3DSA:1.10.10.60 G3DSA:2.40.50.40 G3DSA:3.40.50.10810 G3DSA:3.40.50.300 IPR000330 IPR000953 IPR001650 IPR014001 IPR016197 IPR023780 IPR025260 IPR027417 IPR038718 PF00176 PF00271 PF00385 PF13907 PS50013 PS51192 PS51194 PTHR45623 PTHR45623:SF14 SM00298 SM00487 SM00490 SM01176 SSF52540 SSF54160 cd17993 cd18659 cd18660 cd18793 mobidb-lite	34
LotjaGi1g1v0048500_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp\|Q99315\|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein; TrEMBL-Plants: tr\|B5U9W0\|B5U9W0_LOTJA Putative uncharacterized protein; Found in the gene: LotjaGi1g1v0048500_LC	Domains Coil G3DSA:1.10.340.70 G3DSA:2.40.70.10 G3DSA:3.10.10.10 G3DSA:3.10.20.370 G3DSA:3.30.420.10 G3DSA:3.30.70.270 IPR000477 IPR000953 IPR001584 IPR012337 IPR016197 IPR021109 IPR023780 IPR036397 IPR041577 IPR041588 IPR043128 IPR043502 PF00078 PF00385 PF00665 PF08284 PF17919 PF17921 PS50013 PS50878 PS50994 PTHR24559 PTHR24559:SF294 SSF50630 SSF53098 SSF54160 SSF56672 cd00303 cd01647 cd09274 cd18979 mobidb-lite	39
LotjaGi1g1v0048500_LC.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp\|Q99315\|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein; TrEMBL-Plants: tr\|B5U9W0\|B5U9W0_LOTJA Putative uncharacterized protein; Found in the gene: LotjaGi1g1v0048500_LC	Domains Coil G3DSA:1.10.340.70 G3DSA:2.40.70.10 G3DSA:3.10.10.10 G3DSA:3.10.20.370 G3DSA:3.30.420.10 G3DSA:3.30.70.270 IPR000477 IPR000953 IPR001584 IPR012337 IPR016197 IPR021109 IPR023780 IPR036397 IPR041577 IPR041588 IPR043128 IPR043502 PF00078 PF00385 PF00665 PF08284 PF17919 PF17921 PS50013 PS50878 PS50994 PTHR24559 PTHR24559:SF294 SSF50630 SSF53098 SSF54160 SSF56672 cd00303 cd01647 cd09274 cd18979 mobidb-lite	39
LotjaGi1g1v0100200_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Gypsy/Ty3 element polyprotein, putative; TAIR: AT1G42190.1 GAG/POL/ENV polyprotein; Swiss-Prot: sp\|Q99315\|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein; TrEMBL-Plants: tr\|B5U9W1\|B5U9W1_LOTJA Putative uncharacterized protein; Found in the gene: LotjaGi1g1v0100200_LC	Domains G3DSA:1.10.340.70 G3DSA:3.10.20.370 G3DSA:3.30.420.10 G3DSA:3.30.70.270 IPR000953 IPR001584 IPR012337 IPR016197 IPR036397 IPR041373 IPR041588 IPR043128 IPR043502 PF00665 PF17917 PF17921 PS50013 PS50994 PTHR24559 PTHR24559:SF290 SSF53098 SSF54160 SSF56672 cd09274 cd17785 cd18979	26
LotjaGi1g1v0378800.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Chromatin remodeling factor CHD3 (Pickle); TAIR: AT2G25170.2 chromatin remodeling factor CHD3 (PICKLE); Swiss-Prot: sp\|Q9S775\|PKL_ARATH CHD3-type chromatin-remodeling factor PICKLE; TrEMBL-Plants: tr\|A0A151TT78\|A0A151TT78_CAJCA CHD3-type chromatin-remodeling factor PICKLE; Found in the gene: LotjaGi1g1v0378800	Domains Coil G3DSA:1.10.10.60 G3DSA:2.40.50.40 G3DSA:3.30.40.10 G3DSA:3.40.50.10810 G3DSA:3.40.50.300 IPR000330 IPR000953 IPR001650 IPR001965 IPR009462 IPR009463 IPR013083 IPR014001 IPR016197 IPR019786 IPR019787 IPR023780 IPR027417 IPR038718 PF00176 PF00271 PF00385 PF00628 PF06461 PF06465 PS01359 PS50013 PS50016 PS51192 PS51194 PTHR45623 PTHR45623:SF25 SM00249 SM00298 SM00487 SM00490 SM01146 SM01147 SSF52540 SSF54160 cd17995 cd18659 cd18660 cd18793 mobidb-lite	46
LotjaGi1g1v0378800.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Chromatin remodeling factor CHD3 (Pickle); TAIR: AT2G25170.1 chromatin remodeling factor CHD3 (PICKLE); Swiss-Prot: sp\|Q9S775\|PKL_ARATH CHD3-type chromatin-remodeling factor PICKLE; TrEMBL-Plants: tr\|A0A151TT78\|A0A151TT78_CAJCA CHD3-type chromatin-remodeling factor PICKLE; Found in the gene: LotjaGi1g1v0378800	Domains Coil G3DSA:1.10.10.60 G3DSA:2.40.50.40 G3DSA:3.30.40.10 G3DSA:3.40.50.10810 G3DSA:3.40.50.300 IPR000330 IPR000953 IPR001650 IPR001965 IPR009462 IPR009463 IPR013083 IPR014001 IPR016197 IPR019786 IPR019787 IPR023780 IPR027417 IPR038718 PF00176 PF00271 PF00385 PF00628 PF06461 PF06465 PS01359 PS50013 PS50016 PS51192 PS51194 PTHR45623 PTHR45623:SF25 SM00249 SM00298 SM00487 SM00490 SM01146 SM01147 SSF52540 SSF54160 cd17995 cd18659 cd18660 cd18793 mobidb-lite	46
LotjaGi1g1v0378800.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Chromatin remodeling factor CHD3 (Pickle); TAIR: AT2G25170.2 chromatin remodeling factor CHD3 (PICKLE); Swiss-Prot: sp\|Q9S775\|PKL_ARATH CHD3-type chromatin-remodeling factor PICKLE; TrEMBL-Plants: tr\|A0A151TT78\|A0A151TT78_CAJCA CHD3-type chromatin-remodeling factor PICKLE; Found in the gene: LotjaGi1g1v0378800	Domains Coil G3DSA:1.10.10.60 G3DSA:2.40.50.40 G3DSA:3.30.40.10 G3DSA:3.40.50.10810 G3DSA:3.40.50.300 IPR000330 IPR000953 IPR001650 IPR001965 IPR009462 IPR009463 IPR013083 IPR014001 IPR016197 IPR019786 IPR019787 IPR023780 IPR027417 IPR038718 PF00176 PF00271 PF00385 PF00628 PF06461 PF06465 PS01359 PS50013 PS50016 PS51192 PS51194 PTHR45623 PTHR45623:SF25 SM00249 SM00298 SM00487 SM00490 SM01146 SM01147 SSF52540 SSF54160 cd17995 cd18659 cd18660 cd18793 mobidb-lite	46
LotjaGi1g1v0690100.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Chromatin remodeling factor; TAIR: AT1G08060.1 ATP-dependent helicase family protein; Swiss-Prot: sp\|Q9M658\|MOM1_ARATH Helicase protein MOM1; TrEMBL-Plants: tr\|I1JPN1\|I1JPN1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0690100	Domains Coil G3DSA:2.40.50.40 G3DSA:3.30.40.10 G3DSA:3.40.50.10810 G3DSA:3.40.50.300 IPR000330 IPR000953 IPR001965 IPR013083 IPR016197 IPR019786 IPR019787 IPR023780 IPR027417 IPR038718 PF00176 PF00385 PS01359 PS50013 PS50016 PTHR45623 PTHR45623:SF13 SM00249 SM00298 SSF52540 SSF54160 cd17993 cd18659 cd18660 cd18793 mobidb-lite	31
LotjaGi1g1v0690100.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Chromatin remodeling factor; TAIR: AT1G08060.1 ATP-dependent helicase family protein; Swiss-Prot: sp\|Q9M658\|MOM1_ARATH Helicase protein MOM1; TrEMBL-Plants: tr\|I1JPN1\|I1JPN1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0690100	Domains Coil G3DSA:2.40.50.40 G3DSA:3.30.40.10 G3DSA:3.40.50.10810 G3DSA:3.40.50.300 IPR000330 IPR000953 IPR001965 IPR013083 IPR016197 IPR019786 IPR019787 IPR023780 IPR027417 IPR038718 PF00176 PF00385 PS01359 PS50013 PS50016 PTHR45623 PTHR45623:SF13 SM00249 SM00298 SSF52540 SSF54160 cd17993 cd18659 cd18660 cd18793 mobidb-lite	31
LotjaGi2g1v0144600.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Flap endonuclease 1; TAIR: AT3G48900.2 single-stranded DNA endonuclease family protein; Swiss-Prot: sp\|Q9M2Z3\|GENL2_ARATH Flap endonuclease GEN-like 2; TrEMBL-Plants: tr\|K7MIH1\|K7MIH1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0144600	Domains Coil G3DSA:2.40.50.40 G3DSA:3.40.50.1010 IPR000953 IPR006084 IPR006085 IPR006086 IPR016197 IPR029060 IPR036279 PF00752 PF00867 PR00853 PS50013 PTHR11081 PTHR11081:SF57 SM00298 SM00484 SM00485 SSF47807 SSF54160 SSF88723 cd00024 cd09869	24
LotjaGi2g1v0224800.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Cytosine-specific methyltransferase; TAIR: AT1G69770.1 chromomethylase 3; Swiss-Prot: sp\|Q94F88\|CMT3_ARATH DNA (cytosine-5)-methyltransferase CMT3; TrEMBL-Plants: tr\|K7K149\|K7K149_SOYBN Cytosine-specific methyltransferase; Found in the gene: LotjaGi2g1v0224800	Domains G3DSA:2.30.30.490 G3DSA:3.40.50.150 G3DSA:3.90.120.20 IPR000953 IPR001025 IPR001525 IPR016197 IPR018117 IPR023779 IPR023780 IPR029063 IPR043151 NON_CYTOPLASMIC_DOMAIN PF00145 PF00385 PF01426 PR00105 PS00094 PS00598 PS50013 PS51038 PS51679 PTHR10629 PTHR10629:SF42 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SM00298 SM00439 SSF53335 SSF54160 SignalP-TM TIGR00675 cd18635 mobidb-lite	36
LotjaGi2g1v0315400_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Transposon Ty3-G Gag-Pol polyprotein; TAIR: AT1G42190.1 GAG/POL/ENV polyprotein; Swiss-Prot: sp\|Q99315\|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein; TrEMBL-Plants: tr\|A0A0L9VIM9\|A0A0L9VIM9_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0315400_LC	Domains Coil G3DSA:2.40.50.40 G3DSA:3.30.420.10 IPR000953 IPR012337 IPR016197 IPR023780 IPR036397 PF00385 PS50013 PTHR24559 PTHR24559:SF294 SM00298 SSF53098 SSF54160 cd18979	16
LotjaGi2g1v0356800.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Cytosine-specific methyltransferase; TAIR: AT1G80740.1 chromomethylase 1; Swiss-Prot: sp\|C0SQ89\|CMT3_ORYSJ DNA (cytosine-5)-methyltransferase CMT3; TrEMBL-Plants: tr\|I1J8E3\|I1J8E3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0356800	Domains G3DSA:2.30.30.490 G3DSA:3.40.50.150 G3DSA:3.90.120.20 IPR000953 IPR001025 IPR001525 IPR016197 IPR023779 IPR023780 IPR029063 IPR043151 PF00145 PF00385 PF01426 PR00105 PS00598 PS50013 PS51038 PS51679 PTHR10629 PTHR10629:SF42 SM00298 SM00439 SSF53335 SSF54160 TIGR00675 cd04716 cd18635 mobidb-lite	29
LotjaGi3g1v0001900_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Transposon Ty3-G Gag-Pol polyprotein; TAIR: AT3G47920.1 Ta11-like non-LTR retrotransposon; Swiss-Prot: sp\|P0CT34\|TF21_SCHPO Transposon Tf2-1 polyprotein; TrEMBL-Plants: tr\|A0A1J7HN03\|A0A1J7HN03_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0001900_LC	Domains Coil IPR000953 IPR016197 PS50013 PTHR46148 PTHR46148:SF27 SSF54160 cd18659	8
LotjaGi3g1v0167800_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp\|Q99315\|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein; TrEMBL-Plants: tr\|B5U9V8\|B5U9V8_LOTJA Putative uncharacterized protein; Found in the gene: LotjaGi3g1v0167800_LC	Domains Coil G3DSA:1.10.340.70 G3DSA:2.40.70.10 G3DSA:3.10.10.10 G3DSA:3.10.20.370 G3DSA:3.30.420.10 G3DSA:3.30.70.270 IPR000477 IPR000953 IPR001584 IPR005162 IPR012337 IPR016197 IPR021109 IPR036397 IPR041577 IPR041588 IPR043128 IPR043502 PF00078 PF00665 PF03732 PF08284 PF17919 PF17921 PS50013 PS50878 PS50994 PTHR24559 PTHR24559:SF294 SSF50630 SSF53098 SSF54160 SSF56672 cd00303 cd01647 cd09274 cd18979 mobidb-lite	39
LotjaGi3g1v0259700.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Chromo domain-containing protein LHP1; TAIR: AT5G17690.1 like heterochromatin protein (LHP1); Swiss-Prot: sp\|Q946J8\|LHP1_ARATH Chromo domain-containing protein LHP1; TrEMBL-Plants: tr\|A0A0R0FVG1\|A0A0R0FVG1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0259700	Domains Coil G3DSA:2.40.50.40 IPR000953 IPR008251 IPR016197 IPR023779 IPR023780 PF00385 PS00598 PS50013 PTHR47240 SM00298 SM00300 SSF54160 cd00024 cd18982 mobidb-lite	17
LotjaGi3g1v0423100_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp\|Q99315\|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein; TrEMBL-Plants: tr\|B5U9V8\|B5U9V8_LOTJA Putative uncharacterized protein; Found in the gene: LotjaGi3g1v0423100_LC	Domains Coil G3DSA:1.10.340.70 G3DSA:2.40.70.10 G3DSA:3.10.10.10 G3DSA:3.10.20.370 G3DSA:3.30.420.10 G3DSA:3.30.70.270 IPR000477 IPR000953 IPR001584 IPR012337 IPR016197 IPR021109 IPR036397 IPR041577 IPR041588 IPR043128 IPR043502 PF00078 PF00665 PF08284 PF17919 PF17921 PS50013 PS50878 PS50994 PTHR24559 PTHR24559:SF294 SSF50630 SSF53098 SSF54160 SSF56672 cd00303 cd01647 cd09274 cd18979 mobidb-lite	37
LotjaGi3g1v0423100_LC.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp\|Q99315\|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein; TrEMBL-Plants: tr\|B5U9V8\|B5U9V8_LOTJA Putative uncharacterized protein; Found in the gene: LotjaGi3g1v0423100_LC	Domains Coil G3DSA:1.10.340.70 G3DSA:2.40.70.10 G3DSA:3.10.10.10 G3DSA:3.10.20.370 G3DSA:3.30.420.10 G3DSA:3.30.70.270 IPR000477 IPR000953 IPR001584 IPR012337 IPR016197 IPR021109 IPR036397 IPR041577 IPR041588 IPR043128 IPR043502 PF00078 PF00665 PF08284 PF17919 PF17921 PS50013 PS50878 PS50994 PTHR24559 PTHR24559:SF294 SSF50630 SSF53098 SSF54160 SSF56672 cd00303 cd01647 cd09274 cd18979 mobidb-lite	37
LotjaGi3g1v0434100_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Transposon Ty3-G Gag-Pol polyprotein; TAIR: AT3G06350.1 dehydroquinate dehydratase, putative / shikimate dehydrogenase; Swiss-Prot: sp\|Q9UR07\|TF211_SCHPO Transposon Tf2-11 polyprotein; TrEMBL-Plants: tr\|A0A0L9VIM9\|A0A0L9VIM9_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0434100_LC	Domains G3DSA:2.40.50.40 G3DSA:3.30.420.10 IPR000953 IPR016197 IPR036397 PS50013 PTHR46148 PTHR46148:SF27 SSF54160 cd18979	10
LotjaGi4g1v0022000.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Chromodomain-helicase-DNA-binding family protein; TAIR: AT5G44800.1 chromatin remodeling 4; Swiss-Prot: sp\|F4KBP5\|CHR4_ARATH Protein CHROMATIN REMODELING 4; TrEMBL-Plants: tr\|K7KPZ4\|K7KPZ4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0022000	Domains G3DSA:1.10.10.60 G3DSA:1.20.920.10 G3DSA:2.40.50.40 G3DSA:3.40.50.10810 G3DSA:3.40.50.300 IPR000330 IPR000953 IPR001650 IPR001965 IPR009463 IPR011011 IPR014001 IPR016197 IPR019786 IPR019787 IPR023780 IPR027417 IPR036427 IPR038718 PF00176 PF00271 PF00385 PF00628 PF06465 PS01359 PS50013 PS50016 PS51192 PS51194 PTHR45623 PTHR45623:SF28 SM00249 SM00298 SM00487 SM00490 SM01147 SSF52540 SSF54160 SSF57903 cd11660 cd15532 cd17995 cd18659 cd18660 cd18793 mobidb-lite	46
LotjaGi4g1v0079800_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Transposon Ty3-G Gag-Pol polyprotein; TAIR: AT5G17690.1 like heterochromatin protein (LHP1); Swiss-Prot: sp\|Q9WTK2\|CDYL_MOUSE Chromodomain Y-like protein; TrEMBL-Plants: tr\|A0A1J7FN67\|A0A1J7FN67_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0079800_LC	Domains G3DSA:2.40.50.40 IPR000953 IPR016197 IPR023780 PF00385 PS50013 SSF54160 cd18979	8
LotjaGi4g1v0146500.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Cytosine-specific methyltransferase; TAIR: AT4G19020.1 chromomethylase 2; Swiss-Prot: sp\|Q94F87\|CMT2_ARATH DNA (cytosine-5)-methyltransferase CMT2; TrEMBL-Plants: tr\|A0A0B2PQY3\|A0A0B2PQY3_GLYSO Cytosine-specific methyltransferase; Found in the gene: LotjaGi4g1v0146500	Domains G3DSA:2.30.30.490 IPR000953 IPR001025 IPR001525 IPR016197 IPR018117 IPR023780 IPR029063 IPR043151 NON_CYTOPLASMIC_DOMAIN PF00145 PF00385 PF01426 PR00105 PS00094 PS50013 PS51038 PS51679 PTHR10629 PTHR10629:SF34 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SM00298 SM00439 SSF53335 SSF54160 SignalP-TM TIGR00675 cd18635 mobidb-lite	32
LotjaGi4g1v0146500.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Cytosine-specific methyltransferase; TAIR: AT4G19020.1 chromomethylase 2; Swiss-Prot: sp\|Q94F87\|CMT2_ARATH DNA (cytosine-5)-methyltransferase CMT2; TrEMBL-Plants: tr\|A0A0B2PQY3\|A0A0B2PQY3_GLYSO Cytosine-specific methyltransferase; Found in the gene: LotjaGi4g1v0146500	Domains G3DSA:2.30.30.490 IPR000953 IPR001025 IPR001525 IPR016197 IPR018117 IPR023780 IPR029063 IPR043151 NON_CYTOPLASMIC_DOMAIN PF00145 PF00385 PF01426 PR00105 PS00094 PS50013 PS51038 PS51679 PTHR10629 PTHR10629:SF34 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SM00298 SM00439 SSF53335 SSF54160 SignalP-TM TIGR00675 cd18635 mobidb-lite	32
LotjaGi4g1v0213500_LC.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp\|Q99315\|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein; TrEMBL-Plants: tr\|B5U9W0\|B5U9W0_LOTJA Putative uncharacterized protein; Found in the gene: LotjaGi4g1v0213500_LC	Domains Coil G3DSA:1.10.340.70 G3DSA:2.40.50.40 G3DSA:2.40.70.10 G3DSA:3.10.10.10 G3DSA:3.10.20.370 G3DSA:3.30.420.10 G3DSA:3.30.70.270 IPR000477 IPR000953 IPR001584 IPR012337 IPR016197 IPR021109 IPR023780 IPR036397 IPR041577 IPR041588 IPR043128 IPR043502 PF00078 PF00385 PF00665 PF08284 PF17919 PF17921 PS50013 PS50878 PS50994 PTHR24559 PTHR24559:SF294 SM00298 SSF50630 SSF53098 SSF54160 SSF56672 cd00303 cd01647 cd09274 cd18979	40
LotjaGi4g1v0407700.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Cytosine-specific methyltransferase; TAIR: AT1G69770.1 chromomethylase 3; Swiss-Prot: sp\|Q94F88\|CMT3_ARATH DNA (cytosine-5)-methyltransferase CMT3; TrEMBL-Plants: tr\|K7K149\|K7K149_SOYBN Cytosine-specific methyltransferase; Found in the gene: LotjaGi4g1v0407700	Domains G3DSA:2.30.30.490 G3DSA:3.40.50.150 G3DSA:3.90.120.20 IPR000953 IPR001025 IPR001525 IPR016197 IPR018117 IPR023779 IPR023780 IPR029063 IPR043151 NON_CYTOPLASMIC_DOMAIN PF00145 PF00385 PR00105 PS00094 PS00598 PS50013 PS51038 PS51679 PTHR10629 PTHR10629:SF42 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SM00298 SM00439 SSF53335 SSF54160 SignalP-TM TIGR00675 cd18635 mobidb-lite	35
LotjaGi5g1v0150900_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp\|Q99315\|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein; TrEMBL-Plants: tr\|B5U9W1\|B5U9W1_LOTJA Putative uncharacterized protein; Found in the gene: LotjaGi5g1v0150900_LC	Domains Coil G3DSA:1.10.340.70 G3DSA:2.40.50.40 G3DSA:2.40.70.10 G3DSA:3.10.10.10 G3DSA:3.10.20.370 G3DSA:3.30.420.10 G3DSA:3.30.70.270 IPR000477 IPR000953 IPR001584 IPR012337 IPR016197 IPR021109 IPR023780 IPR036397 IPR041577 IPR041588 IPR043128 IPR043502 PF00078 PF00385 PF00665 PF08284 PF17919 PF17921 PS50013 PS50878 PS50994 PTHR24559 PTHR24559:SF294 SM00298 SSF50630 SSF53098 SSF54160 SSF56672 cd00303 cd01647 cd09274 cd18979 mobidb-lite	41
LotjaGi5g1v0200800_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Transposon Ty3-G Gag-Pol polyprotein; TAIR: AT1G17250.1 receptor like protein 3; Swiss-Prot: sp\|Q9UR07\|TF211_SCHPO Transposon Tf2-11 polyprotein; TrEMBL-Plants: tr\|A0A151R7E6\|A0A151R7E6_CAJCA Retrotransposable element Tf2; Found in the gene: LotjaGi5g1v0200800_LC	Domains G3DSA:1.10.340.70 G3DSA:3.10.20.370 G3DSA:3.30.420.10 G3DSA:3.30.70.270 IPR000953 IPR001584 IPR012337 IPR016197 IPR036397 IPR041373 IPR041588 IPR043128 IPR043502 PF00665 PF17917 PF17921 PS50013 PS50994 PTHR24559 PTHR24559:SF294 SSF53098 SSF54160 SSF56672 cd09274 cd18979	25
LotjaGi6g1v0101400_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Transposon Ty3-G Gag-Pol polyprotein; TAIR: AT1G42190.1 GAG/POL/ENV polyprotein; Swiss-Prot: sp\|Q9UR07\|TF211_SCHPO Transposon Tf2-11 polyprotein; TrEMBL-Plants: tr\|A0A0L9VIM9\|A0A0L9VIM9_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0101400_LC	Domains G3DSA:2.40.50.40 IPR000953 IPR016197 IPR023780 PF00385 PS50013 PTHR46148 PTHR46148:SF27 SSF54160 cd18979	10

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
cd18979	CDD	1	1.96