Domain Predictions — View

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cd00024

Source: CDD

Description

CHROMO

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 28

Transcript	Name	Description	Predicted domains	Domain count
Lj0g3v0024609.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: DNA (cytosine-5)-methyltransferase CMT2-like [Cicer arietinum] gi\|502154028\|ref\|XP_004509555.1\|	Domains G3DSA:2.40.50.40 G3DSA:3.40.50.150 IPR000953 IPR001025 IPR016197 IPR023780 IPR029063 NON_CYTOPLASMIC_DOMAIN PF00385 PF01426 PS50013 PS51038 PTHR10629 PTHR10629:SF34 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SM00298 SM00439 SSF53335 SSF54160 SignalP-TM_GRAM_POSITIVE cd00024 mobidb-lite	25
Lj0g3v0024609.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: DNA (cytosine-5)-methyltransferase CMT2-like [Cicer arietinum] gi\|502154028\|ref\|XP_004509555.1\|	Domains G3DSA:2.40.50.40 G3DSA:3.40.50.150 G3DSA:3.90.120.10 IPR000953 IPR001025 IPR001525 IPR016197 IPR018117 IPR023780 IPR029063 NON_CYTOPLASMIC_DOMAIN PF00145 PF00385 PF01426 PR00105 PS00094 PS50013 PS51038 PS51679 PTHR10629 PTHR10629:SF34 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SM00298 SM00439 SSF53335 SSF54160 SignalP-TM_GRAM_POSITIVE TIGR00675 cd00024 mobidb-lite	33
Lj0g3v0041269.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: chromo domain-containing protein LHP1-like [Glycine max] gi\|356560656\|ref\|XP_003548606.1\|	Domains G3DSA:2.40.50.40 IPR000953 IPR008251 IPR016197 IPR023779 IPR023780 PF00385 PS00598 PS50013 PTHR22812 SM00298 SM00300 SSF54160 cd00024 mobidb-lite	15
Lj0g3v0060019.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial-like [Solanum lycopersicum] gi\|460387771\|ref\|XP_004239547.1\|	Domains G3DSA:2.40.50.40 IPR000953 IPR016197 IPR023780 PF00385 PS50013 SSF54160 cd00024	8
Lj0g3v0198479.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: DNA (cytosine-5)-methyltransferase CMT3-like isoform X2 [Cicer arietinum] gi\|502164095\|ref\|XP_004513047.1\|	Domains G3DSA:2.40.50.40 G3DSA:3.40.50.150 IPR001025 IPR001525 IPR016197 IPR018117 IPR029063 PF00145 PR00105 PS00094 PS51038 PS51679 PTHR10629 PTHR10629:SF28 SSF53335 SSF54160 cd00024 mobidb-lite	18
Lj0g3v0209969.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Ty3/gypsy retrotransposon protein [Beta vulgaris subsp]. vulgaris] gi\|387965727\|gb\|AFK13856.1\|	Domains Coil G3DSA:2.40.50.40 G3DSA:3.30.420.10 IPR000953 IPR012337 IPR016197 IPR023780 PF00385 PTHR24559 PTHR24559:SF186 SM00298 SSF53098 SSF54160 cd00024	14
Lj0g3v0238439.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Ty3-gypsy retrotransposon protein [Cucumis melo subsp]. melo] gi\|307135885\|gb\|ADN33750.1\|	Domains G3DSA:2.40.50.40 IPR000953 IPR016197 IPR023780 PF00385 PS50013 SSF54160 cd00024	8
Lj0g3v0251499.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Os09g0346900 [Oryza sativa Japonica Group] gi\|115478697\|ref\|NP_001062942.1\|	Domains IPR016197 IPR032001 PF16719 PTHR33827 PTHR33827:SF2 SSF54160 cd00024	7
Lj1g3v0129730.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: LOW QUALITY PROTEIN: serine/threonine-protein phosphatase 4 regulatory subunit 3-like [Cucumis sativus] gi\|449529986\|ref\|XP_004171978.1\|	Domains G3DSA:2.40.50.40 IPR000953 IPR016197 IPR023780 PF00385 PS50013 SSF54160 cd00024	8
Lj1g3v1290440.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: DNA (cytosine-5)-methyltransferase CMT3-like isoform X2 [Cicer arietinum] gi\|502164095\|ref\|XP_004513047.1\|	Domains G3DSA:2.40.50.40 G3DSA:3.40.50.150 IPR000953 IPR001025 IPR001525 IPR016197 IPR018117 IPR023779 IPR023780 IPR029063 PF00145 PF00385 PR00105 PS00094 PS00598 PS50013 PS51038 PS51679 PTHR10629 PTHR10629:SF28 SM00298 SSF53335 SSF54160 cd00024 mobidb-lite	25
Lj1g3v1820910.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: CHD3-type chromatin-remodeling factor PICKLE-like isoform X2 [Cicer arietinum] gi\|502132460\|ref\|XP_004501371.1\|	Domains Coil G3DSA:2.40.50.40 G3DSA:3.30.40.10 G3DSA:3.40.50.300 IPR000330 IPR000953 IPR001650 IPR001965 IPR009462 IPR009463 IPR013083 IPR014001 IPR016197 IPR023780 IPR027417 PF00176 PF00271 PF00385 PF06461 PF06465 PS50013 PS51192 PS51194 PTHR10799 PTHR10799:SF741 SM00249 SM00298 SM00487 SM00490 SM01146 SM01147 SSF52540 SSF54160 cd00024 cd00046 cd00079 mobidb-lite	37
Lj1g3v1820910.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: CHD3-type chromatin-remodeling factor PICKLE-like [Glycine max] gi\|356515042\|ref\|XP_003526210.1\|	Domains Coil G3DSA:2.40.50.40 G3DSA:3.30.40.10 G3DSA:3.40.50.300 IPR000330 IPR000953 IPR001650 IPR001965 IPR009462 IPR009463 IPR012957 IPR013083 IPR014001 IPR016197 IPR023780 IPR027417 PF00176 PF00271 PF00385 PF06461 PF06465 PF08074 PS50013 PS51192 PS51194 PTHR10799 PTHR10799:SF741 SM00249 SM00298 SM00487 SM00490 SM01146 SM01147 SSF52540 SSF54160 cd00024 cd00046 cd00079 mobidb-lite	39
Lj1g3v1820910.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: CHD3-type chromatin-remodeling factor PICKLE-like isoform X2 [Cicer arietinum] gi\|502132460\|ref\|XP_004501371.1\|	Domains G3DSA:2.40.50.40 G3DSA:3.30.40.10 G3DSA:3.40.50.300 IPR000330 IPR000953 IPR001650 IPR001965 IPR013083 IPR014001 IPR016197 IPR023780 IPR027417 PF00176 PF00271 PF00385 PS50013 PS51192 PS51194 PTHR10799 PTHR10799:SF741 SM00249 SM00298 SM00487 SM00490 SSF52540 SSF54160 cd00024 cd00046 cd00079	29
Lj1g3v4590860.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: chromodomain-helicase-DNA-binding protein 3-like [Cicer arietinum] gi\|502111276\|ref\|XP_004494007.1\|	Domains Coil G3DSA:2.40.50.40 G3DSA:3.30.40.10 IPR000330 IPR000953 IPR001965 IPR013083 IPR016197 IPR019786 IPR019787 IPR023780 IPR027417 PF00176 PF00385 PS01359 PS50013 PS50016 PTHR10799 PTHR10799:SF620 SM00249 SM00298 SSF52540 SSF54160 cd00024 cd00046 mobidb-lite	26
Lj2g3v0039020.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	T32E20.30 [Arabidopsis thaliana] gi\|8778789\|gb\|AAF79797.1\|AC020646_20	Domains G3DSA:2.40.50.40 IPR000953 IPR016197 IPR023780 PF00385 SM00298 SSF54160 cd00024	8
Lj2g3v1646590.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: DNA (cytosine-5)-methyltransferase 1-like [Glycine max] gi\|356540854\|ref\|XP_003538899.1\|	Domains G3DSA:2.40.50.40 G3DSA:3.40.50.150 IPR000953 IPR001025 IPR001525 IPR016197 IPR023779 IPR023780 IPR029063 PF00145 PF00385 PF01426 PR00105 PS00598 PS50013 PS51038 PS51679 PTHR10629 PTHR10629:SF30 SM00298 SM00439 SSF53335 SSF54160 cd00024 cd04716 mobidb-lite	26
Lj2g3v1646590.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: DNA (cytosine-5)-methyltransferase 1-like [Glycine max] gi\|356495335\|ref\|XP_003516534.1\|	Domains G3DSA:2.40.50.40 G3DSA:3.40.50.150 G3DSA:3.90.120.10 IPR000953 IPR001025 IPR001525 IPR016197 IPR023779 IPR023780 IPR029063 PF00145 PF00385 PF01426 PR00105 PS00598 PS50013 PS51038 PS51679 PTHR10629 PTHR10629:SF30 SM00298 SM00439 SSF53335 SSF54160 TIGR00675 cd00024 cd04716 mobidb-lite	28
Lj3g3v0428880.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Sequence-specific DNA binding protein [Arabidopsis lyrata subsp]. lyrata] gi\|297834744\|ref\|XP_002885254.1\|	Domains Coil G3DSA:1.10.10.60 IPR001356 IPR009057 IPR032001 PF00046 PF16719 PS50071 PTHR33827 PTHR33827:SF3 SM00389 SSF46689 cd00024 cd00086 mobidb-lite	15
Lj3g3v0807640.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: MYST-like histone acetyltransferase 2-like isoform X2 [Cicer arietinum] gi\|502127234\|ref\|XP_004499615.1\|	Domains G3DSA:2.30.30.270 G3DSA:3.40.630.30 IPR000953 IPR002717 IPR016181 IPR016197 IPR025995 PF01853 PF11717 PS51726 PTHR10615 PTHR10615:SF103 SM00298 SSF54160 SSF55729 cd00024 cd04301 mobidb-lite	18
Lj3g3v3553970.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: signal recognition particle 43 kDa protein, chloroplastic-like [Cicer arietinum] gi\|502144378\|ref\|XP_004505675.1\|	Domains G3DSA:1.25.40.20 G3DSA:2.40.50.40 IPR000953 IPR002110 IPR016197 IPR020683 IPR023780 IPR030300 PF00385 PF13857 PS50013 PS50088 PS50297 PTHR24128 PTHR24128:SF11 SM00248 SM00298 SSF48403 SSF54160 cd00024 cd00204 mobidb-lite	22
Lj3g3v3553980.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: signal recognition particle 43 kDa protein, chloroplastic-like [Glycine max] gi\|356538524\|ref\|XP_003537753.1\|	Domains G3DSA:1.25.40.20 G3DSA:2.40.50.40 IPR000953 IPR002110 IPR016197 IPR020683 IPR023780 IPR030300 PF00385 PF13857 PS50013 PS50088 PS50297 PTHR24128 PTHR24128:SF11 SM00298 SSF48403 SSF54160 cd00024 cd00204 mobidb-lite	21
Lj4g3v0244050.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Chromatin remodeling complex subunit [Theobroma cacao] gi\|508704985\|gb\|EOX96881.1\|	Domains G3DSA:2.40.50.40 G3DSA:3.30.40.10 G3DSA:3.40.50.300 IPR000330 IPR000953 IPR001650 IPR001965 IPR009463 IPR011011 IPR013083 IPR014001 IPR016197 IPR019786 IPR019787 IPR023780 IPR027417 PF00176 PF00271 PF00385 PF00628 PF06465 PS01359 PS50013 PS50016 PS51192 PS51194 PTHR10799 PTHR10799:SF725 SM00249 SM00298 SM00487 SM00490 SM01147 SSF52540 SSF54160 SSF57903 cd00024 cd00046 cd00079 cd11660 cd15532 mobidb-lite	42
Lj4g3v1534990.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Ty3/gypsy retrotransposon protein [Beta vulgaris subsp]. vulgaris] gi\|387965727\|gb\|AFK13856.1\|	Domains Coil G3DSA:2.40.50.40 G3DSA:3.30.420.10 IPR000953 IPR012337 IPR016197 PS50013 PTHR24559 PTHR24559:SF186 SSF53098 SSF54160 cd00024	12
Lj5g3v0735780.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Ty3/gypsy retrotransposon protein [Beta vulgaris subsp]. vulgaris] gi\|387965727\|gb\|AFK13856.1\|	Domains G3DSA:2.40.50.40 IPR000953 IPR016197 IPR023780 PF00385 PS50013 SSF54160 cd00024	8
Lj5g3v0866940.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Sequence-specific DNA binding transcription factor [Arabidopsis thaliana] gi\|22331151\|ref\|NP_188467.2\|	Domains IPR032001 PF16719 PTHR33827 PTHR33827:SF3 cd00024 mobidb-lite	6
Lj6g3v1732740.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Ty3/gypsy retrotransposon protein [Beta vulgaris subsp]. vulgaris] gi\|387965727\|gb\|AFK13856.1\|	Domains G3DSA:2.40.50.40 IPR000953 IPR016197 IPR023780 PF00385 PS50013 SSF54160 cd00024	8
LotjaGi2g1v0144600.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Flap endonuclease 1; TAIR: AT3G48900.2 single-stranded DNA endonuclease family protein; Swiss-Prot: sp\|Q9M2Z3\|GENL2_ARATH Flap endonuclease GEN-like 2; TrEMBL-Plants: tr\|K7MIH1\|K7MIH1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0144600	Domains Coil G3DSA:2.40.50.40 G3DSA:3.40.50.1010 IPR000953 IPR006084 IPR006085 IPR006086 IPR016197 IPR029060 IPR036279 PF00752 PF00867 PR00853 PS50013 PTHR11081 PTHR11081:SF57 SM00298 SM00484 SM00485 SSF47807 SSF54160 SSF88723 cd00024 cd09869	24
LotjaGi3g1v0259700.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Chromo domain-containing protein LHP1; TAIR: AT5G17690.1 like heterochromatin protein (LHP1); Swiss-Prot: sp\|Q946J8\|LHP1_ARATH Chromo domain-containing protein LHP1; TrEMBL-Plants: tr\|A0A0R0FVG1\|A0A0R0FVG1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0259700	Domains Coil G3DSA:2.40.50.40 IPR000953 IPR008251 IPR016197 IPR023779 IPR023780 PF00385 PS00598 PS50013 PTHR47240 SM00298 SM00300 SSF54160 cd00024 cd18982 mobidb-lite	17

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
mobidb-lite	MobiDBLite	1	3.57