Domain Predictions — View

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PS00598

Source: ProSitePatterns

Description

Chromo domain signature.

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 8

Transcript	Name	Description	Predicted domains	Domain count
Lj0g3v0041269.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: chromo domain-containing protein LHP1-like [Glycine max] gi\|356560656\|ref\|XP_003548606.1\|	Domains G3DSA:2.40.50.40 IPR000953 IPR008251 IPR016197 IPR023779 IPR023780 PF00385 PS00598 PS50013 PTHR22812 SM00298 SM00300 SSF54160 cd00024 mobidb-lite	15
Lj1g3v1290440.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: DNA (cytosine-5)-methyltransferase CMT3-like isoform X2 [Cicer arietinum] gi\|502164095\|ref\|XP_004513047.1\|	Domains G3DSA:2.40.50.40 G3DSA:3.40.50.150 IPR000953 IPR001025 IPR001525 IPR016197 IPR018117 IPR023779 IPR023780 IPR029063 PF00145 PF00385 PR00105 PS00094 PS00598 PS50013 PS51038 PS51679 PTHR10629 PTHR10629:SF28 SM00298 SSF53335 SSF54160 cd00024 mobidb-lite	25
Lj2g3v1646590.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: DNA (cytosine-5)-methyltransferase 1-like [Glycine max] gi\|356540854\|ref\|XP_003538899.1\|	Domains G3DSA:2.40.50.40 G3DSA:3.40.50.150 IPR000953 IPR001025 IPR001525 IPR016197 IPR023779 IPR023780 IPR029063 PF00145 PF00385 PF01426 PR00105 PS00598 PS50013 PS51038 PS51679 PTHR10629 PTHR10629:SF30 SM00298 SM00439 SSF53335 SSF54160 cd00024 cd04716 mobidb-lite	26
Lj2g3v1646590.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: DNA (cytosine-5)-methyltransferase 1-like [Glycine max] gi\|356495335\|ref\|XP_003516534.1\|	Domains G3DSA:2.40.50.40 G3DSA:3.40.50.150 G3DSA:3.90.120.10 IPR000953 IPR001025 IPR001525 IPR016197 IPR023779 IPR023780 IPR029063 PF00145 PF00385 PF01426 PR00105 PS00598 PS50013 PS51038 PS51679 PTHR10629 PTHR10629:SF30 SM00298 SM00439 SSF53335 SSF54160 TIGR00675 cd00024 cd04716 mobidb-lite	28
LotjaGi2g1v0224800.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Cytosine-specific methyltransferase; TAIR: AT1G69770.1 chromomethylase 3; Swiss-Prot: sp\|Q94F88\|CMT3_ARATH DNA (cytosine-5)-methyltransferase CMT3; TrEMBL-Plants: tr\|K7K149\|K7K149_SOYBN Cytosine-specific methyltransferase; Found in the gene: LotjaGi2g1v0224800	Domains G3DSA:2.30.30.490 G3DSA:3.40.50.150 G3DSA:3.90.120.20 IPR000953 IPR001025 IPR001525 IPR016197 IPR018117 IPR023779 IPR023780 IPR029063 IPR043151 NON_CYTOPLASMIC_DOMAIN PF00145 PF00385 PF01426 PR00105 PS00094 PS00598 PS50013 PS51038 PS51679 PTHR10629 PTHR10629:SF42 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SM00298 SM00439 SSF53335 SSF54160 SignalP-TM TIGR00675 cd18635 mobidb-lite	36
LotjaGi2g1v0356800.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Cytosine-specific methyltransferase; TAIR: AT1G80740.1 chromomethylase 1; Swiss-Prot: sp\|C0SQ89\|CMT3_ORYSJ DNA (cytosine-5)-methyltransferase CMT3; TrEMBL-Plants: tr\|I1J8E3\|I1J8E3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0356800	Domains G3DSA:2.30.30.490 G3DSA:3.40.50.150 G3DSA:3.90.120.20 IPR000953 IPR001025 IPR001525 IPR016197 IPR023779 IPR023780 IPR029063 IPR043151 PF00145 PF00385 PF01426 PR00105 PS00598 PS50013 PS51038 PS51679 PTHR10629 PTHR10629:SF42 SM00298 SM00439 SSF53335 SSF54160 TIGR00675 cd04716 cd18635 mobidb-lite	29
LotjaGi3g1v0259700.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Chromo domain-containing protein LHP1; TAIR: AT5G17690.1 like heterochromatin protein (LHP1); Swiss-Prot: sp\|Q946J8\|LHP1_ARATH Chromo domain-containing protein LHP1; TrEMBL-Plants: tr\|A0A0R0FVG1\|A0A0R0FVG1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0259700	Domains Coil G3DSA:2.40.50.40 IPR000953 IPR008251 IPR016197 IPR023779 IPR023780 PF00385 PS00598 PS50013 PTHR47240 SM00298 SM00300 SSF54160 cd00024 cd18982 mobidb-lite	17
LotjaGi4g1v0407700.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Cytosine-specific methyltransferase; TAIR: AT1G69770.1 chromomethylase 3; Swiss-Prot: sp\|Q94F88\|CMT3_ARATH DNA (cytosine-5)-methyltransferase CMT3; TrEMBL-Plants: tr\|K7K149\|K7K149_SOYBN Cytosine-specific methyltransferase; Found in the gene: LotjaGi4g1v0407700	Domains G3DSA:2.30.30.490 G3DSA:3.40.50.150 G3DSA:3.90.120.20 IPR000953 IPR001025 IPR001525 IPR016197 IPR018117 IPR023779 IPR023780 IPR029063 IPR043151 NON_CYTOPLASMIC_DOMAIN PF00145 PF00385 PR00105 PS00094 PS00598 PS50013 PS51038 PS51679 PTHR10629 PTHR10629:SF42 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SM00298 SM00439 SSF53335 SSF54160 SignalP-TM TIGR00675 cd18635 mobidb-lite	35

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
mobidb-lite	MobiDBLite	1	12.50