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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0269600 |
| Transcript ID | LotjaGi3g1v0269600.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DNA repair RAD51-like protein; TAIR: AT2G28560.2 DNA repair (Rad51) family protein; Swiss-Prot: sp|Q9SK02|RA51B_ARATH DNA repair protein RAD51 homolog 2; TrEMBL-Plants: tr|A0A0S3SGI1|A0A0S3SGI1_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0269600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:51955976..51963334) extracted from Lotus japonicus Gifu genome v1.2.
ATTTAAACCCTAAATCCCCAAAACAACGACGAAAGAAAACTCTGAATCAAGTTTGGGTGTTTTGACGTTCCTTCCTTGAT TCATTCCCTCTTCTGTTTCCCGCCAAAACAGAAGAGCAGAGAAAGGAGCGAACGATGGCGAACAAGGTCATCAAGCAGAT GGGATTACCCAAATCCATCGCCAACATCTTCACCGCTCGTAACATCATCACCGCCAAAGTAAACTTTCCCTCTCAATTTG CTTCCCTAATTCAATTTTGTTTCCCCTTTATATTCCATTCTCCGATTTTGCTCAGAAATTTCCTTTTATCTCTTCGAATT ATCTGCAATTAGGTCTTCGTTTTTCAGAGAAATGATGCATTTTTTTATTGTTCAAAATCACAGGACGCGTTGTCTCTCAC TGATTTTGAGTTGATGGAGTTGTTGGACGTTGGAATGGCAGAAGTAACATCTGCCATGGCACACATTAGTGAAGTTGTGT GTCCACCTTGTCAAACTGTATGTACATCCTCTTTTATTTTTTTAGATTTGTTATTGTTACCATTATTTCAATTTGTTCAG GAATCAATTACTGAGTATTTGTGATAATGATACTGTTGTAGGCGTTACTTCTGATGGAGCAGCGAGTACGCAATGAGAGC CTGGCCGGTCATCTTCCCACTCGTTTGAAAGGGTTGGATGAAGCCTTGTGTGGTGGTATACCCTTTGGTGTTTTGACTGA GTTGGTTGGTCCAGCTGGAATTGGCAAAACACAGGTATAATTGGTTTGCATTTAAATTTATACCAGGATGAATGCATTTC AGATTTGGATTATGCTAAGGTTTGAGAGAATATTTTCCACTTTCCAGTGATTGTTAATAAGGATAGGTGAACTTTTTATT GCAGTTTTGCTTGAAGCTCTCACTGCTGGCTTCAATGCCCGCGAGTTGTGGAGGCTTAGATGGCCGCGTGATATATATTG ACGTTGAATCCAAATTCAGTTCGAAAAGGTACTTGAAACACACAGGCATTGTGTTTTTCGATTTCAATAATATGATATTA TTCAGTGTTACATGTTTTCATTGTGTTGAACACTAGTGAATTCGCTTCTTTTATTCCTCAGATTGATAGAGATTGGATTG AAGAGTTTTCCTGAAATATTTCACAAAAAGGGAATGGCACAGGAGGTGTGCTGGTTATCTCTCTCTCTCCCTCGCTCTTA TATTTTCTTCTGAGGATTGTCTTAATTGACATATGCAGATGGCTGGTAGAATCCTGATTTTGCGTCCTACATCACTTTCT GAGTTTGCTGAGTGGTGAGAATCTCCGCATGACTTTATTGTAGTTATTCTCAGGTACCCTATTTTAATAATTTAAAACAA GAGAACTCAGTTATGTTGTCTCAAATAGATGCTGCAATAGTTTAAATATTTTTTAGCACTAGAGAATGGTCATAAATTAT GAAAGTTATGATTCAGAAGGGCAGAAGAGAAATAATGCAAACAAAATGTGAAAAGTTCAAAGTTTGGCTCTTTGGACTGG ACGGGGGGGGGGGGGGGAGAGAAAAAAAGAGGACCGGGTTGTTTTGGTGTTATACTTATACAACATTAAATGGTTACTTT CCCAGTTGAAACAGGTTACTGGTACACCATACCTACTCTGTCAAGACTGTCTTTCTGTCTCTGATCTGAAGGAAAAACAC GTTATCAAAGCTTATCACTAGTTTAGAAATGAACTTGATATGCAATTGGGTTTCTATTAGTCTTAGAGTCTCTTTCTGAT TCATGACTCTCTTAACCATTCTAGTAACTTACGTTGTTGAACTTGCTACTTGTCATAGCTTTTATTTTATTCTGCCCTTC CTAAGTTTCTATAAGACAAGTGACACTGTTAATGTACTAAATGATGTGTTAACATTACCAGTTTGAAGCAGATCAAAGTA TCCCTCCTCCAGCAACACGTAAAGTTGCTCATCATTGACAGCATGGCTGCACTGGTTTTAGGGTGAGCTTAACATTGGGG CAATGCTTGTGAATAGTATATTAAAGGATACTTTCTTAAAATGCGCATCAAAATTTTAATCATTCTTACAATGTCCTCCG ATGCATATCTCATACATACAGTTTGTTCAATTTTTCTGTTCAGTGAACATGATTGTGGGGCTTCAAGACATCAAGCATTG GGTTGGCATGTTTCTTTTATCAAGTATGACTATACCATCTTTACTGTTACGAGTGAGATTTTTGCAAAGGACAACTGCTT GCTTCTTCCTCGAGGTGGTACTGATTATAAACATGTCTAGGTCACTTGCTGAATTTTCACGAATTCCAATTGTATTGACA AATCAAGTAAGATCTCAAACTGGTGATGAATCTCGCATGTATTCGTTTCAAGGTATGATGAATAAATTATATTTGGATAG AGCTTTAGACTGTGTAGTTTAACTTGTCATTGGGCGTTTTTACTTGTTAAGCAGCACAGAGCCACTCTATTAAAAAAGAC AATCCTGCTACATATGATTCTCATCTTGTTGCTGCCTTGGGCATTAATTGGGCTCATGCTGTGACCATCCGTCTTATACT TGAATCCAAATCAGGTTGGTTAATTTTCAGTGATTTGTTGTGTTTTTCTGTAACAAATGATCACGTGTATGCCACTGCCA CCTGGATTTAACTCAAATTGTTGAACTGGGTTGAGGTCGTTATTTAAACTTATGGTAATGACTCATTACTTAATTTCAAG TTAGATTGTATTTGGAGTTGTCCACATATGGAGAGAGAGGGGGCGGGGAGAGAAGTCAGAAATTTATATAAATTGTTAAT AGTCAGATGTCCCATTTATAAAGTAAGTATTTTATATGAATGAGTTTTGTTACATGGATCTGTTGTTCATTCTGACAATT TTTGGTTAAAATTTGGTAAGTGATTTGAGATTGAAAATTTAGCAATTAAGATAAAAAGGGGAGAAAGAGAGATAGGGATG GAACACAAGATATTATGATTTGCTAAAAAGTCTGGATAATTGTGATACAAAACGCTGACCTTATACCCAGATTTATATTA ACAGTATGAGTGTGTTTAGATTTGCTTTTTTATTTTTGTCTTGAAAATACTTTACAATTTATATCTTACTAGAAGAGTTT TTGAAATGAAAAGAGCAATTTCCCCTCGAAACCAATCATAACCAATACATGCTAGGTGTCTAGGTCAAGTACTAGTGTAG TACAATTAGTAAAAGGCCAACATAAAAACACTCCGGCCTAACTAACACAATGTAAGTTTATAAGTTAGCTCAATAGTATT CTGACAAGTTCTAATGTGTCAACCAACTGACCAAGTATTTATTGTAGATTGTAATACATGATTTTGTTTGTTTACAAATT TGAATTTGAGTTGTTCAATTTCTTGCAGGTCAACGATTTATCAAGTTAGCAAAATCTCCCATATCACCTCCCCTGGCTTT CCCTTTTAGCATAACTTCGTCAGGGGTGGTTCTGTTGGATGATGATGGGATGGAGATAAGAGGGCCAGAAATAAATACTA TTCACTGTCAAGGTTTGTCTTTTAGCTTTTTTCCGGTTAGGCCTTCTGAGTACATTTTAAGTGAGCAAGTAAAATACTTG GAAAGTTAAAACCATATCCCATAAATGACGTCCACAACTTGTACTATATTTTATATAGGCATGATTTCCCTAAAAATAAG CTCTTACTTAGGACATTAGGTTGAAATTTTGTGTTAAATGTGCCAATGCTAGAATCTTGAGTTGCAACTCTTAGAGGGTT TCCTTAGTTTCTAATGTACTAATGCTAGAATCTTGAGTTCTTGAGTGACCTATTTCATATTTCATGAAAAATATGCAGGT CAAAATGCTCTGTTTAATTTTGAAGGGGTAAGGCACCAATGATCAGTCCATAATATGTGCCTGCCAATTATATGGTGTGT CATGACAGTATCCATTTATGTCCCACTCATATCTATTAGCAGTTCAACAATCCATCTGCTTTCAGAAATTCTGAGGTTAG TTCAGTTAATGTCCTTGGAATGTATATCTTATTGTTCTAAGCTTTCATACTTGCCCCGGAGCTTCTGAATGTATTTTTCC AGCCATATAGCCTAAAATAGGTAATTGTGTTAATTATTTACTGCGTAAATTTTTCCATATTAATTCTCTTTACCTTTATC ATGAGATTATTGATGGCAATTGAATCTGAAGTATTTCGTGTCTTTAGGCTACAAATATCAAATATGTGAACACGAATTCT AATTTAATTTTATGAGATGATTTAGATCCTTACATTTAGTTGTGGACAGTTGCACGTTTCCCCCTCTGCCATTGTTTGTC ACCACTCACGATTATGTTTCTTGTCTTTGTAAAAATAAGTGAACTATAATATCATAGCATGGAGCTCAGCTTGTTTGATT ATTTTGATCGAATGTATTAGCTTCATGACTTCAGATCTCAACTTTGAGTCGGTGACCATGTGGTTCCAAAATTTGTTGAA CTTATAATGCTTCACTTCCAGCACCTTGCAAGTATCCATTAGTCATCATCTCATCAAGCAAATCTTGCACTAGGACTCAT GCTGACTCAAAGATGATTTATTTCGTATTTGCTTCTGTCTTTCGAAGACTTTTATATGCTCATATTTTGTTCTTCGGAAT AAGCTGTTTAATTATGTTCCTAGAATTTATGTTCCTATATGTTAGGAACGATGGTCAGGTATCAAGGCCACAAGAGAGAT TGGCTCATCATGAGGATGTGGGCCCTAAAGTATGGAGGGTATATTCTAGGAGGGGCAAGAAAGGGAATAGTGGCTAACCG TCTAACAGAATAGAGAGAGATTGAGTGATTGTAATATCTCCAGTATATAAGGAGAGTAAGAGAGGTAGAGTGGGTATCCA GAGAATTGCTAGCTGTTAGTATGGATAGGAAGCATTAGCAATGCTTCCTATAGGAGCATTGCTCTGGGCAGAGTATTTGG GAGCACATTCCTTCTCTGTAATTTCTTTCCACAATCAATAAACAATAACTTTCCTGCATTTTCTCATTCATTTGTGGTGT GTGTGAGTGGGTTCCTAACACTATACTTGCCTATAACTTATTTTGACTTTATTAATAACGGTTGAAATAATGAACTGAAT ATACTTTTACTTATTTAATGACTTCCAGTTTTAAAAACATTAATAAATAGGTTTCCTCAAAAAAAAAAAATTAATAAATA GGTAGGCACAAATAAAACATGGACTCGAAGTTTGTCCCACAGTAAATATGTGATCATAATCCACTTACTGCCTTTTTTTT GGTAAAACTTTTCTCAATTCATACTTATAGATAGTTGGTGATTATAAGGGTTCAGTGTTTTTTGTTAAAGGAAAGAGTGT ACACTGTTAGGATTAAAAATCCAAATTGAGTTATTTTAAAATGAGGAGCCCACTGCAATTTTTTTTTTCAAATAAGCCCA ATGTACATTGTAAAGGGTAGAGTGGGGACTGAGGACTGATAATCCTAACTTTTGGGCCATTTTGCACACTAACATGATTG TAGAAATACAAACACACTGTGGACTTGCTTTGTTTCAAGGTAAAATACTTTTATGCATTATTTATTGATAGCACAATATT CTCATATTAATAAGTCAAATGAAAATAGTCTAATCCAACATTATAGTGAACATTGAATACGTGCCTGCCAATTATATGGT GTGTCATGGCAGTATCCATTTATGTCCCACTCATATCTATTAGCAGTTCAACAATCCATCTGCTTTCAGAAATTCTGAGG TTAGTTCAGTTAATGTCCTTGGAATGTATATCTTATTGTTCTAAGCTTTCATACTTGACCCGGAGCTTCTGAATGTATTT TTCCAGCCATATAACCTAAAATAGGTAATTGTGCTAATTATTTACTGCGTAAATTTTTCCATATTAATTCTCTTTACCTT TATCATGAGATTATTGATGGCAATTGAATCTGAAGTATTTCGTTTCTTTAGGCTACAAATATCAAATATGTGAACACGAA TTCTAATTAAATTTTATGAGATGATTTAGATCCTTACATTTAGTTGTGGACAGTTGCACGTTTCCCCCTCTGCCATTGTT TGTCACCACTCACGATTATGTTTCTTGTCTTTGTAAAAATAAGTGAACTATAATATCATAGCATGGAGCTCAGCTTATTT GATTATTTTGATCGAATGTATTAGCTTCATGACTTCAGATCTCAACTTTGAGTCTGTGACCATGTGGTTCCAAAATTTGT TGAACTTATAATGCTTCACTTCCAGCACCTTGCAAGTATCCATTAGTCATCATCTCATCAAGCAAATCTTGCACTAGGAC TCATGCTGAGTCAAAGAAGATTTATTTCGTATTTGCTTCTGTCTTTCGAAGACTTTTATATGCTCATATTTTGTTCTTCG GAATAAGCTGTTTAATTATGTTCCTAGAATTTATGTTCCTATACTTGCCTATAACTTATTTTGACTTTATTAATAACGGT TGAACTAATGAACTGAATATACTTTTACCTATTTAATGACTTCCAGTTTTAAAAACATTAATAAATAGGTTTCCTCAAAA AAAAAAACTAATAAATAGGTAGGCACAAATAAAACATGGACTCGAAGTTTGTCCCACAGTAAATATGTGATCATAATTTG TACCAAGAAATATGTGATCATAATCCACTTACTGCCTTTTTTTTGGTTAAAACTTTTCTCAATTCATACTTATAGATAGT TGGTGATTATAAGGGTTCAGTGTTTTTTGTTAAAGGAAAGAGTGTACACTGTTAGGATTAAAAATCCAAATTGAGTTATT TTAAAATGAGGAGCCCACTGCAATTTCTTTTTTCAAATAAGCCCAATGTTCATTGTAACGGGTAGAGTGGGGACTGAGGA CTGATAATCCTAACTTTTGGGCCATTTTGCACACTAACATGATTGTAGAAATACAAACACACTGTGGACTTGCTTTGTTT CAAGGGAAAATACTTTTATGCATTATTTATTGATAGCACAATATTCTCATATTAGTAAGTCAAATGAAAATAGTCTAATC CAACATTATAGTGAACGTTGAATACCCCCCCGTGTTTACTAGCCAATATTTTGCCATATGGTTTGTTAGGTACCAGAAAA CAGAGTAGGAAAATAGAGACTGATTATACTAGATTAGCACTGAATCCTCTGGTATGAACCCAGAAGCAGTGTTTGCAGTA ATACAAAGGAAAGCAAATGAAGAAGAAAATGAACAAAGAGCAAATTCGAGAGTGTTCTATCTCTCCCAAGTCCTAGGCAA TTTCTGCCTACCTCTCTCTATACTAACATATATATCTCTCTATACTAACATATATATCCTTAGCTAATAGTACTGGTCC
CDS sequence (LotjaGi3g1v0269600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGAACAAGGTCATCAAGCAGATGGGATTACCCAAATCCATCGCCAACATCTTCACCGCTCGTAACATCATCACCGC CAAAGACGCGTTGTCTCTCACTGATTTTGAGTTGATGGAGTTGTTGGACGTTGGAATGGCAGAAGTAACATCTGCCATGG CACACATTAGTGAAGTTGTGTGTCCACCTTGTCAAACTGCGTTACTTCTGATGGAGCAGCGAGTACGCAATGAGAGCCTG GCCGGTCATCTTCCCACTCGTTTGAAAGGGTTGGATGAAGCCTTGTGTGGTGGTATACCCTTTGGTGTTTTGACTGAGTT GGTTGGTCCAGCTGGAATTGGCAAAACACAGTTTTGCTTGAAGCTCTCACTGCTGGCTTCAATGCCCGCGAGTTGTGGAG GCTTAGATGGCCGCGTGATATATATTGACGTTGAATCCAAATTCAGTTCGAAAAGATTGATAGAGATTGGATTGAAGAGT TTTCCTGAAATATTTCACAAAAAGGGAATGGCACAGGAGATGGCTGGTAGAATCCTGATTTTGCGTCCTACATCACTTTC TGAGTTTGCTGAGTGTTTGAAGCAGATCAAAGTATCCCTCCTCCAGCAACACGTAAAGTTGCTCATCATTGACAGCATGG CTGCACTGGTTTTAGGTGAACATGATTGTGGGGCTTCAAGACATCAAGCATTGGGTTGGCATGTTTCTTTTATCAAGTCA CTTGCTGAATTTTCACGAATTCCAATTGTATTGACAAATCAAGTAAGATCTCAAACTGGTGATGAATCTCGCATGTATTC GTTTCAAGCACAGAGCCACTCTATTAAAAAAGACAATCCTGCTACATATGATTCTCATCTTGTTGCTGCCTTGGGCATTA ATTGGGCTCATGCTGTGACCATCCGTCTTATACTTGAATCCAAATCAGGTCAACGATTTATCAAGTTAGCAAAATCTCCC ATATCACCTCCCCTGGCTTTCCCTTTTAGCATAACTTCGTCAGGGGTGGTTCTGTTGGATGATGATGGGATGGAGATAAG AGGGCCAGAAATAAATACTATTCACTGTCAAGGTCAAAATGCTCTGTTTAATTTTGAAGGGGTAAGGCACCAATGA
Protein sequence (LotjaGi3g1v0269600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MANKVIKQMGLPKSIANIFTARNIITAKDALSLTDFELMELLDVGMAEVTSAMAHISEVVCPPCQTALLLMEQRVRNESL AGHLPTRLKGLDEALCGGIPFGVLTELVGPAGIGKTQFCLKLSLLASMPASCGGLDGRVIYIDVESKFSSKRLIEIGLKS FPEIFHKKGMAQEMAGRILILRPTSLSEFAECLKQIKVSLLQQHVKLLIIDSMAALVLGEHDCGASRHQALGWHVSFIKS LAEFSRIPIVLTNQVRSQTGDESRMYSFQAQSHSIKKDNPATYDSHLVAALGINWAHAVTIRLILESKSGQRFIKLAKSP ISPPLAFPFSITSSGVVLLDDDGMEIRGPEINTIHCQGQNALFNFEGVRHQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PIRSF | 1 | 342 | 342 | 6.1E-57 | ||
| PANTHER | 1 | 360 | 360 | 6.4E-181 | ||
| Gene3D | 65 | 342 | 278 | 3.3E-59 | – | |
| ProSiteProfiles | 80 | 255 | 176 | 39.671 | ||
| Pfam | 83 | 337 | 255 | 4.3E-39 | ||
| SUPERFAMILY | 83 | 338 | 256 | 9.32E-36 | ||
| SMART | 101 | 278 | 178 | 0.0027 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Double-strand break repair via homologous recombination | The error-free repair of a double-strand break in DNA in which the broken DNA molecule is repaired using homologous sequences. A strand in the broken DNA searches for a homologous region in an intact chromosome to serve as the template for DNA synthesis. The restoration of two intact DNA molecules results in the exchange, reciprocal or nonreciprocal, of genetic material between the intact DNA molecule and the broken DNA molecule. | ||
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | DNA repair | The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway. | ||
| Molecular function | DNA-dependent ATPase activity | Catalysis of the reaction: ATP + H2O = ADP + phosphate; this reaction requires the presence of single- or double-stranded DNA, and it drives another reaction. | ||
| Cellular component | Rad51B-Rad51C-Rad51D-XRCC2 complex | A DNA recombinase mediator complex that contains the Rad51 paralogs RAD51B, RAD51C, RAD51D, and XRCC2, or orthologs thereof. |
Expression pattern of LotjaGi3g1v0269600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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