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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0281000 |
| Transcript ID | LotjaGi3g1v0281000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Histone H2A; TAIR: AT5G02560.1 histone H2A 12; Swiss-Prot: sp|A2XZN0|H2A6_ORYSI Probable histone H2A.6; TrEMBL-Plants: tr|I3SUS3|I3SUS3_LOTJA Histone H2A; Found in the gene: LotjaGi3g1v0281000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:56248106..56249187) extracted from Lotus japonicus Gifu genome v1.2.
TATAAAAGCATTTCAACTCATCTCTCACCTCCACGTTCGCAATCATCTGAGTCTCACACCTGCAATTTCTCACATCGCGT CAAAGTCACGCGCAACCAGGAATCTAGGGTTCGAACCTCGCCAATCGCCATGGACACCGGAGGAAAATCGAAGAAAGGTG CCGGAGGAAGAAAAGCTGGTGGCCCAAAGAAGAAGCCAGTTTCGAGATCGGTGAAGGCTGGTCTCCAATTCCCCGTCGGA AGAATCGGACGGTACTTGAAGAAAGGAAGGTATGCTCAGCGTGTCGGAACCGGTGCTCCGGTGTACCTTGCTGCTGTTCT GGAGTATCTCGCTGCTGAGGTAACTAACTGTCAATTTCGATTTCAATTTTGCATTTCAATTCTTTCTCTGAGATTCTGAA ATGGAACCCTAATTTTTTTGATTAGGTGCTTGAGTTGGCTGGAAATGCTGCTCGTGACAACAAGAAGAACAGGATTATCC CGAGGCATGTTCTGCTTGCTGTGAGGAACGATGAGGAGCTTGGGAAATTGCTTGCTGGAGTCACCATTGCTCATGGTGGT GTTCTTCCCAACATCAACCCTGTGCTTCTGCCTAAGAAGACTGCTGAGAAAGCTCCTAAGGAGTCAAAGTCTCCTCCTAA GAAGGCTGGAAAGTCTCCCAAGAAAGCTTAGATTATCAAGTTAGGCTGATTTCTGATTCTAGATTGTTCATGTTGTGTTT GGTTTGTAAATTTGCAATTAGGTGGTTCTTCTGTGATAAAAAGTATTCAATGTGTTTGAAAGAATGTAATTCTGATTTCA CTGTTGTTCTTAGTATTTATAATAAGCAATTTCTGGGATTATCAAGCTTTTCTGTCTCGATACACATGTTGTTGCTAAAT TCAACCCAGTAAACGATAAAAGCTCTGTTCTCTAAAAACCTGGAGAAGAAAATTCGAGATCAAGTGACAATCGATGTTCA GTATTCAGTTTCCTCGCTAATTTGTTGTATAAGATGATATTCTTTTAATTGATAAATTTTGATATTTTGTTGGTGGATTG TGTCTTTAGCGCGAGAATTACAGTATATAAATATGAGTAATG
CDS sequence (LotjaGi3g1v0281000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACACCGGAGGAAAATCGAAGAAAGGTGCCGGAGGAAGAAAAGCTGGTGGCCCAAAGAAGAAGCCAGTTTCGAGATC GGTGAAGGCTGGTCTCCAATTCCCCGTCGGAAGAATCGGACGGTACTTGAAGAAAGGAAGGTATGCTCAGCGTGTCGGAA CCGGTGCTCCGGTGTACCTTGCTGCTGTTCTGGAGTATCTCGCTGCTGAGGTGCTTGAGTTGGCTGGAAATGCTGCTCGT GACAACAAGAAGAACAGGATTATCCCGAGGCATGTTCTGCTTGCTGTGAGGAACGATGAGGAGCTTGGGAAATTGCTTGC TGGAGTCACCATTGCTCATGGTGGTGTTCTTCCCAACATCAACCCTGTGCTTCTGCCTAAGAAGACTGCTGAGAAAGCTC CTAAGGAGTCAAAGTCTCCTCCTAAGAAGGCTGGAAAGTCTCCCAAGAAAGCTTAG
Protein sequence (LotjaGi3g1v0281000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDTGGKSKKGAGGRKAGGPKKKPVSRSVKAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAAVLEYLAAEVLELAGNAAR DNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTAEKAPKESKSPPKKAGKSPKKA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 150 | 150 | 2.5E-83 | – | |
| MobiDBLite | 1 | 27 | 27 | - | – | |
| PANTHER | 1 | 150 | 150 | 2.5E-83 | – | |
| Gene3D | 7 | 137 | 131 | 4.6E-63 | ||
| SMART | 11 | 131 | 121 | 4.4E-79 | ||
| SUPERFAMILY | 13 | 135 | 123 | 1.92E-42 | ||
| Pfam | 15 | 97 | 83 | 1.0E-12 | ||
| CDD | 19 | 128 | 110 | 1.44522E-67 | ||
| PRINTS | 22 | 44 | 23 | 2.1E-51 | ||
| ProSitePatterns | 30 | 36 | 7 | - | ||
| PRINTS | 51 | 66 | 16 | 2.1E-51 | ||
| PRINTS | 66 | 79 | 14 | 2.1E-51 | ||
| PRINTS | 80 | 94 | 15 | 2.1E-51 | ||
| Pfam | 100 | 133 | 34 | 1.3E-18 | ||
| PRINTS | 108 | 126 | 19 | 2.1E-51 | ||
| MobiDBLite | 127 | 151 | 25 | - | – | |
| MobiDBLite | 129 | 143 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Nucleosome | A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures. | ||
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | Protein heterodimerization activity | Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer. |
Expression pattern of LotjaGi3g1v0281000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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