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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0281100 |
| Transcript ID | LotjaGi3g1v0281100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Histone H2A; TAIR: AT5G02560.1 histone H2A 12; Swiss-Prot: sp|A2XZN0|H2A6_ORYSI Probable histone H2A.6; TrEMBL-Plants: tr|I3T2M3|I3T2M3_LOTJA Histone H2A; Found in the gene: LotjaGi3g1v0281100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:56259530..56260648) extracted from Lotus japonicus Gifu genome v1.2.
TCACCCCACACCATCACAATTTCGCCCCTCCATAAAACCGCGCTAATTCTCCAATCTTCATTCACCAAACACATTTTCAT TTTCCCTCTCTTCATTCCTTCGCCCTCTTCAATCGTCCCGCGCAAGCTTCTCTGAGAATCTAGGGTTTCGGCAATGGACT CCACCGCCACAGGAAAGGTCAAGAAGGGCGCCGCCGGAAGGAAAGCCGGAGGCCCCAAGAAGAAGTCAGTTTCCAGATCG GTGAAGGCCGGTCTCCAATTCCCCGTCGGAAGAATCGGACGCTACCTGAAGAAGGGAAGGTACGCTCAGCGTGTTGGATC TGGTGCTCCTGTGTACCTTGCTGCTGTTCTTGAGTATCTCGCTGCTGAGGTAACTAACTGTCAATTTCAATTCCAATTTT GCAATTTTGCATTTCAATTCTTTCTCTGAGATTCGGAAATGGAACCCTAATTTTTTCGATTTTTTTGATTAGGTGCTTGA GTTGGCTGGAAATGCTGCTCGTGACAACAAGAAGAACAGGATTATCCCGAGGCACGTTCTTCTTGCTGTGAGGAACGATG AGGAGCTTGGGAAATTGCTTGCTGGTGTGACCATTGCTCATGGTGGTGTTCTTCCCAACATCAACCCTGTGCTTCTGCCT AAGAAGACTGCTGAGAAAGCTCCTAAGGAACCTAAGTCTCCAGCGAAGAAGGCTGCAAAATCTCCCAAGAAAGCTGCTGC TTAGGTTGAATTAGGGTAGATAATATTGGGTTAAATTTCAGTTTTAGCTTATTACCCCTTTTGTTTCTTCTGTATATCGA TGGTTAGAAGAAAAAAAATGATCGATGCTTTTGGTTTATTGTATCACAGTGTTGCTTTAACCAGTTTCACTCATCAATGA AACCATCTTGTTTTTTGGTTATATTTGTTGCCTATTTTTGTTTTCTATGATTCAACGCTTGTTGTAGATTATGTAAGCTA AACTGTTACTTAACTGCCTCAATCGCTTAATTGAATTTTGTTATCTTAGTTCTTGTTGATGTTGTATTTTTCTTATAGTT CTTAACTAAGTTCTAATCGTTTGTTAAATGTTGAATTTCATAGTAGAAATATACAATTGGGGGTCATGGTGTCATTTTC
CDS sequence (LotjaGi3g1v0281100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACTCCACCGCCACAGGAAAGGTCAAGAAGGGCGCCGCCGGAAGGAAAGCCGGAGGCCCCAAGAAGAAGTCAGTTTC CAGATCGGTGAAGGCCGGTCTCCAATTCCCCGTCGGAAGAATCGGACGCTACCTGAAGAAGGGAAGGTACGCTCAGCGTG TTGGATCTGGTGCTCCTGTGTACCTTGCTGCTGTTCTTGAGTATCTCGCTGCTGAGGTGCTTGAGTTGGCTGGAAATGCT GCTCGTGACAACAAGAAGAACAGGATTATCCCGAGGCACGTTCTTCTTGCTGTGAGGAACGATGAGGAGCTTGGGAAATT GCTTGCTGGTGTGACCATTGCTCATGGTGGTGTTCTTCCCAACATCAACCCTGTGCTTCTGCCTAAGAAGACTGCTGAGA AAGCTCCTAAGGAACCTAAGTCTCCAGCGAAGAAGGCTGCAAAATCTCCCAAGAAAGCTGCTGCTTAG
Protein sequence (LotjaGi3g1v0281100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDSTATGKVKKGAAGRKAGGPKKKSVSRSVKAGLQFPVGRIGRYLKKGRYAQRVGSGAPVYLAAVLEYLAAEVLELAGNA ARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTAEKAPKEPKSPAKKAAKSPKKAAA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 29 | 29 | - | – | |
| PANTHER | 6 | 152 | 147 | 3.7E-82 | – | |
| PANTHER | 6 | 152 | 147 | 3.7E-82 | – | |
| Gene3D | 11 | 139 | 129 | 4.5E-63 | ||
| Pfam | 13 | 99 | 87 | 6.2E-14 | ||
| SMART | 13 | 133 | 121 | 1.2E-79 | ||
| SUPERFAMILY | 16 | 136 | 121 | 3.69E-43 | ||
| CDD | 16 | 130 | 115 | 8.1965E-68 | ||
| PRINTS | 24 | 46 | 23 | 5.5E-52 | ||
| ProSitePatterns | 32 | 38 | 7 | - | ||
| PRINTS | 53 | 68 | 16 | 5.5E-52 | ||
| PRINTS | 68 | 81 | 14 | 5.5E-52 | ||
| PRINTS | 82 | 96 | 15 | 5.5E-52 | ||
| Pfam | 102 | 135 | 34 | 1.4E-18 | ||
| PRINTS | 110 | 128 | 19 | 5.5E-52 | ||
| MobiDBLite | 129 | 155 | 27 | - | – | |
| MobiDBLite | 131 | 145 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Nucleosome | A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures. | ||
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | Protein heterodimerization activity | Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer. |
Expression pattern of LotjaGi3g1v0281100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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