Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi3g1v0281600.1

Overview

Field Value
Gene ID LotjaGi3g1v0281600
Transcript ID LotjaGi3g1v0281600.1
Lotus japonicus genome version Gifu v1.2
Description Histone H2A; TAIR: AT5G02560.1 histone H2A 12; Swiss-Prot: sp|Q9M531|H2A_EUPES Histone H2A; TrEMBL-Plants: tr|V4LCQ3|V4LCQ3_EUTSA Histone H2A; Found in the gene: LotjaGi3g1v0281600
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:56352672..56353590) extracted from Lotus japonicus Gifu genome v1.2.

ATGAGGAATTGAGATAGTCTAGAATTATATAGGTGGCGTCTGATTGGTTTAACTGAAAACACACGGATCACTGTTTTAAA TCATCTATAATCGTGATAAGATCAAATCCAACGATCACCATTTGCTTAATGCCACATCCAAACAACACTCATCCTCTATA AAACCACGCTTAATACTTCTCCAATTACATCGTCGTCTTCCCTTCCCCATCGACATACTAGAAACACTTCATCCCGCACA AGTCACGGTAAGAATCTAGTGTCACCATGGACACCACTAGGAAGGTGAAGAAAGGTGTTGGAGGGAGAAAGAAAGGAGGC CTAAAGAAAAAGCCGGTTTCAAGGTCAATGAAGGCTGGTCTCCAATTCCCCGTCGGGAGGATTGGACGTTACCTTAAGAA AGGAAGGTACGCTAAGCGTGTTGGTACTAGTGCTTCTGTTTACATGGCTGCTACTCTCGAATATCTGACTGCTGAGGTAA CTTTTCATTTCTCTTTCAATTATGTTTTAATTTTTTTTATTTTTCAATTGATTTCCAACCCTATTGTTTTCATGTGTATG TGGTTGCTCAGGTTCTTGAGTTGTCTGGAAATGCTGCTCTTGACAATATGAAGAAACAGATTAGTCCGAGGCACATTATG CTGGCAGTTAGGAACGATGAAGAGCTGGGGAAATTGTTGGATGGGGTCACCATTGCTTATGGTGGTGTTGTCCCTAAAAT CAACCCAGCGCTGCTGTTTGAGAAGAAAGCTGGTAAGGCTCCCAAAACATCCAAGTCTCCGAAGGAGTCAAATGCCCCCA AGGAGGCCAATTCTACCTCTAAGGATGTTGAGCCCTAAAATAATTGTTTTTTGAAATCTTTGGTCAATCTTAAGTTTTTG TTCTTAAATTGTATTCAGATCAAAGATCTTATTTTGGGG
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0281600.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGACACCACTAGGAAGGTGAAGAAAGGTGTTGGAGGGAGAAAGAAAGGAGGCCTAAAGAAAAAGCCGGTTTCAAGGTC AATGAAGGCTGGTCTCCAATTCCCCGTCGGGAGGATTGGACGTTACCTTAAGAAAGGAAGGTACGCTAAGCGTGTTGGTA CTAGTGCTTCTGTTTACATGGCTGCTACTCTCGAATATCTGACTGCTGAGGTTCTTGAGTTGTCTGGAAATGCTGCTCTT GACAATATGAAGAAACAGATTAGTCCGAGGCACATTATGCTGGCAGTTAGGAACGATGAAGAGCTGGGGAAATTGTTGGA TGGGGTCACCATTGCTTATGGTGGTGTTGTCCCTAAAATCAACCCAGCGCTGCTGTTTGAGAAGAAAGCTGGTAAGGCTC CCAAAACATCCAAGTCTCCGAAGGAGTCAAATGCCCCCAAGGAGGCCAATTCTACCTCTAAGGATGTTGAGCCCTAA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0281600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MDTTRKVKKGVGGRKKGGLKKKPVSRSMKAGLQFPVGRIGRYLKKGRYAKRVGTSASVYMAATLEYLTAEVLELSGNAAL DNMKKQISPRHIMLAVRNDEELGKLLDGVTIAYGGVVPKINPALLFEKKAGKAPKTSKSPKESNAPKEANSTSKDVEP
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 24 24 - –
PANTHER
PTHR23430
4 151 148 5.2E-65 –
PANTHER
PTHR23430:SF260
4 151 148 5.2E-65 –
MobiDBLite
mobidb-lite
9 23 15 - –
Gene3D
G3DSA:1.10.20.10
10 137 128 1.5E-54
IPR009072
SMART
SM00414
11 131 121 1.1E-66
IPR002119
Pfam
PF00125
20 97 78 1.1E-11
IPR007125
PRINTS
PR00620
22 44 23 5.1E-43
IPR002119
CDD
cd00074
23 128 106 2.29271E-61
IPR002119
SUPERFAMILY
SSF47113
25 125 101 3.19E-38
IPR009072
ProSitePatterns
PS00046
30 36 7 -
IPR032458
PRINTS
PR00620
51 66 16 5.1E-43
IPR002119
PRINTS
PR00620
66 79 14 5.1E-43
IPR002119
PRINTS
PR00620
94 106 13 5.1E-43
IPR002119
Pfam
PF16211
100 133 34 4.3E-14
IPR032454
PRINTS
PR00620
108 126 19 5.1E-43
IPR002119
MobiDBLite
mobidb-lite
130 158 29 - –
MobiDBLite
mobidb-lite
137 151 15 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000786
Cellular component Nucleosome A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures.
Subterm of
Part of
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0046982
Molecular function Protein heterodimerization activity Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer.
Subterm of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0281600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…