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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0303100 |
| Transcript ID | LotjaGi3g1v0303100.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Vacuolar protein sorting-associated protein 36; TAIR: AT5G04920.1 EAP30/Vps36 family protein; Swiss-Prot: sp|Q9FF81|VPS36_ARATH Vacuolar protein sorting-associated protein 36; TrEMBL-Plants: tr|V7AJ01|V7AJ01_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0303100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:63245138..63253073) extracted from Lotus japonicus Gifu genome v1.2.
CGCACTCGTACTCTCATGTGTTAACAAGTTTTACAACTTAAAAAAAAAAACAAGTTTTACATGTACTACATCTTATCAAA ATTCGTTTTTTCAGTTTTTGTTACATCATAAATGAATTATGCAAAGAAGTGAAAGTGATTTTGATGAACGGTCAAAGGGT CACAGTTCAACTCCAATTTGAACTGAAACCTTGAAACTTTCTCCGATGGCCGGAAACTGCTTACCGGCGGTGAAGCTCAC CGGAAGTGGCCGGCCGGTACTATTACCGAACGAGATCGAGTGCTTCTTCCTCTCCGGCGTCGACCTTCTCTGCGAAGACG AACCCAACTCCTGGTTCCCTCACCTCAAATCCGGCCTCCTCATCCTCACCACCCACCGCCTCCTCTGGCTCCCCGAACCC GCCGACGGCGGCACTTCCTCCGCTGTCCACCTCGCCGCGATCTCCCACATCTTCCCTCACAAGAAGTCCCTCAAGTCCGT CTTCGCCTCGCCTAGGGTCCGTTTCCAGGTTTCGCCGTCGCCGGAGGGCGGAGTTGCTGCATCGGGGTCGAGGTCTGTGG TGGCCACTATTGTGGTGAGGGGGAAGGGGGAATTCGACGCGTTTGTGGCTAAGTTTTGGGAGAATTGGCGCGCCAGGGCG TGGGAGGAGGCGGAGAGTGGTCAGAGTTCGGGGGCGAATGTGGCGGCGACGGCGGCAACGTCATCGTCGTCGGGTGGGAT TTATGGGAGGGACGGGACGGTGAGGATGGTGGGAGTGTCGGGGATATTGAGGAAGGAGCAGGAAATGTGGGAGAGTACTG ATAAGAGCTTGCAGGATGCTTTTCAGGATTTGAATGCTCTCATGGTAATGTGTCTATGTCTATATTGTTTTTGATAATTT TGATAATTTGCTGCTTGTTGGACCAAATTAGTGGTATGTATGAGGTTTTGGTAGAAGGAAGATAACTAGATGAATTGGAT TGGATTGAATTTTGTTTCCCAAAGTCTATTTGGTTTCGATTTAATGGTCGAGGGAGCTTTAATTATGGCTTTGATTAATA GGATTCTGTTCAGTATTCACAAGTGCATCATTTTTGAAATCTTAATGTTTTATCATGGCTTGCTTGGGCCATGATAGTAA TGACGGTGACGTTGGATCTATATAGCTGAACTCACTCAGTGGGAAATGCTAATATGCTTTGGTTCTTGTTGTTATATGCT TTTCTTGGGTCATTAGTTACAAGGAAATATTTGGTGGTGGTTGCTATGTTTGCGTATATATAAGCTGCATGTTTATATCA TGCTGGCTAAGGCATTCTAAACAATATTATTCCTGCAAACTAATCATGTGGATTTATGAAATTTTATTTCCGTCTTGTCT TGAGGTTTAGGCGGTGTAAATTATGTATGTGGAGTAATTTGGGGACACTTAGTTAAGCAAAAGGGAAACATCACTCTATT TGATTTTGGTCCAGGGAAGTGAATGCTAATCCAATAAACAGAACCTCACTAGTTTTGTGTCAATTTTGTAGGTGTACTTT TGAGCTGAGTTTTAGCTTATGTTTTGCAAACAGACGTTAAACAGTTGATTCATCTGCTTGATTATGACAATTGTAGTTAT CTCTAGAATTGCTACTATGCAGAAATTCTTTAACTATTTCATTTTTGGTTCATATTAAGCTTAAACTGCTTTATGTCTTG GGATGATGCTGAATTTGCAGAGCAAGGCTAAAGAAATGGTGATGCTAGCAGAGAAAATGAGGCAAAAACTTTTGTCTGGC TCAAATTCTCAAACCAATGCAACTAATGAGGAGGAGATGGGTACAAAGGAAGAGATGCAAGATTGGTTATTGAGCGTTGG TATAATATCCCCTGTTACCAAAGAGTCTGCGGGTGCTATGTATCATCAGCAGTTATCTCGTCAGGTACTATCATCCGTTC TTGTAATAATGAGTTATTTCCGTTGTTATCACAAGATCGTGCGAATTGATGTGCTTTTAAGAAAGATTGTTGTTATTACT TCCAGTATTTTCGCGTTAACATTCAAAACACTGATTTTATTTACACAATTCACAGTTGGGGATTTTTATCATGGAGCCTT TTATTCCTTTCATTTTTAATGGGGGATCTCTCATGATGTCCTGTTCACTGATTTAAAAATAATCATGTCCAAAGTCTCTG GACATTTCAAGTTTTGCTAGTGTACAGGAACAATGAAACATTCATGAAATTGAAATATGATTATAGTGTTGAACCATATG TTGATGAACATGTTGAATATGGATTTTTGTTTGCCTCATTGCCTTTGGTGATGGCAATGAAAGATTGACATGGGGGTACT ATCAAGGGCAGATGGTGTTGGAGAGGAAAGTATACTCAAAACCAAGCCAAAAGGAATAACATGGGCTAAGTCAGAGGAAT AGTAGAGTAGCATGGATCAAATAGATAATAGGAGATTTCTTGTACATAAAACAATAGTAGAAATCATGCTGCACACAAAG TATTGTAACTTGTAAGACAAGGGTTCTACTTCTTTGCTGTAAAAAATTGTGGCCTTTTGACTTAATTGTTGTGCAAGAGC CTAGGGAGAGATCTCTTATTCATCCTCTCTATTCTTTGGGAGGAAGCTATGAGCAGTTATTTTTGATAGTTTTCTTACTA ACATGCTTTCAAGCTGCATCTTCATATTATTTAATATGTTTTCTCACTTGAATAGAAGTAATGGGAAAAATGTTTTCAAG GTTTTGGAGTTATTATTTTCTGATGTATAAAAGAAAAGGTTTTGGAGTTATTGATGCTTGCTTGGCTGGTTGCATTTTGG TGGTGTGCTGTTCGTTTAAAATATTCTAATTTGTCCTTACTAATACGTAGTTGGCAGATTTTGTTAAAGTTCCACTTGAG AGAGCTGGAGGAATTATCAATCTTATTGATATTTATTGTCTCTTCAATCGTGCTCGTGGCACAGGTTTCAGTACTCTGCC TTGTATGTTCCCTCAGACATGATTATCTTTCAAGTTGTACATTTGAATTAATACCTCCCTTGTTTTGGTTGTCTAATAAA CAGAATTGATCTCACCTGATGATTTGTTGCAAGCATGCTCTTTGTGGGAAAAGTTTGATGTGTATGTATTATCTTCTATT TTAATTACATCTGTTACCATGTTCTTGTTTGTTGTACTTCCATACATTATGTTAAATTGTTTCAGCCCAGTCGTTCTACG GAAGTTTGATAGAGGAGTCATGGTAATACAGACTAAGTCCCACAGTGATGAGGAGGCAAGTTTATTTTATCTTTTCATCT GTGGTTATTTTTATATCTGTTGAAGGTTTTACGAATTATCACTGTTATTAACTTGGGAAAAGCATCCTTGTCTTTTGGTT GTCATCTTATGGATTTTGGGCTGCACTCTAATTGTGAGAGATCATGTTGGTGGGTTATTGTTGAATAGCATTAGCTTGAA TTTATACTAGTTATGTTTTCCAATTAGCCCGGGGCTCTTTAGACTTTTGCTTAGGTTCTTCCCAGAAAATGTAATAGGTT GGGTGGATCCCACACGTGAGTGGGGATCCATGCCATGTCAACTATTTATGACTGTGGTAACTGGTAAAAGCATTGTTGTA TAAACCACACCACCCTGGCTAGCCAGATCACAAAGTTAGTGATCTGACTTTTTGGTTGGTGAGTATGAATTTTTCTGACC GTTTTTGAAAATGAACTGGTTTAAATCGGGTTGAACTGATGTTGAACTTAAAAAGATGAGCCATTATGATGAGCTTTGCA AACTTAAGGAAGAAATATGAGCATGAAAAAGTGGAAGAAATCAAATCTCTGTTTTTGCAGAATGGAAGTATGTGGATTGT GGAAACTATAAACGAGGTTGAGTTTGGTTCTTCTGCTGGGACCTTCTTTTTGTGCTTCATTTTTGCATCAAGAAGTATTC CTAGTTTCTGATTTAGCTTTGTGCTTCCTTTTTTTTGCTTTTCTTGCTTTGTATACTTTCATTGACTTTGATTCTGATTA GTTTAGGGTTCTTTTATTATGCTTGCACGTTTAGGTTATGGTTAACTTCACTATGGAGGACAGAATTGTCAGTTCCTTGT TAGTCTGTTCAATGAGGTAGTTGGAGCTAGTTAGGATTAGTTGGGACTAAGATAGATGGAGAGGTAGGCTATGTTATATA TAAATAATAGGAAGGGATGAGACTTGAGAGCGAGACTAGCTAGTCATTTTATGAGAGAGTTGGGGCCTTAGGTTAAAGAG ATACTGACCCTCAAAGATCTGCAGCGCCGTATCTGTAATCATGGGAGATTTCCTCTATTCTTTCTAGTTTAGTACAAGGT TCCTAGCATTTCTCTTGCATAAATTTTGTTTACTGTTTGACTGTTTGTATTTCTTCTTGTTAGACCACTGGATTAGCGAT TGAACTAGTGACCAGTTGATCTGACCTTTTGAATGCTGGATCTCCCATTCTTAATTTTGAGAAGATTTTTATATCTGTAA CAGACTATGCAATATCTGCCAAATTTTGTTGATTTCCATTAACTGATCCTCCCCTTTGCTATATAAATCTCTTGGGGTGT GATCTTTCAATGGGTTGCTACACAGACTTGAAGTTATATCTTAGATTAATTAATTCATTCTTCTGTCCTGTGTTTTTATA TTGGATAAGGTAAAAGAATGTGTTGTATATAACTTTTGTAAGGTTTTCAATTTTCATTTACGTTTTTGTTATTGAAATTA ACTTCTACTAATGTTGAACTGGAAGATGGTCAAATTAGACTTCATTAACAAACTGCTATTGGTGTAGGTTTTCGCTAAAA TCAAGGTGCTTGTTATGAAGCCTGATGCTCTCCGAGCTGGAATAAGTGCTAGTGACGCTGCAATGACACTGGCAGTTGCC CCAGCAATGGCAAAGGAACATCTCTTGTCTGCTGAGAGCAAGGGTACACTGCTGTACCACTACTTTCCACAATATGTTCA ATTAAATACCTGTATTCTGATTTTTTGCCAAATCTTTCCCAGGTATACTGTGCAGAGATATAAGCCCTGATGGATTTCGC TTTTATATTAATTTGTTCCCTGAAATCGATCGAGATGATATGCATGTGTAAGTAAACTTTCTATATACGTTGTTTTGGCT TCCTTTTACATTAATTGCTATCCCTGTTCCTACATCTCATTGGTTTCTAGTTTAATAGTTCAATGATAGAAGATGATTTT GTTCATTGATTGATTTCATAATCATAAGTTGTTTTGTGATATTTGGTTGCACACTGCCATTTATACAGAGTGAAAGATCA AGGGATTTATGCCTCCTGGGTAAGTGCAAACCATGCTCATGGTTAGAGTTGCAAGCTTGTGCAATTCAATACAGGGTATT GACAAATTTTGAGTGTTAATAACTGGCCTGGCTTGAGCTAGTTCATGTGCCTGTTAGTCTGTTGCCCCTTTTAATAATTG TATATAAGGGAGGGGCATATTTGTTGAGTATAAGATAGGAGGAGTTAATTTTGATCATATAACCTTCCATGGATAGTCAA GTTGATTTTTATTTGATCAAATTTGCCAGATTTTGATTGTTAAGAACTGGCCCCTCTTGAGCTAGTTCACGTCTGTTTTG CTCCTTCTAATCATTATATACAAGGGGCATATTTGTTTTGATCATTTATTTATGTTTTATAGTTAAGGTCAATTCCTCTC ATGAAAAGCTTCCACTCTTTCTCTATCTCACTCTCTCCACAGAGTTTTAATTTGCTTCAGCCAATGTTAGATTTACATTG TAGAGAACATTTAACCATGAGAAAGATGAAAGATCTGATGACATTTTATTCATTTGAATTCGGCTAGCACTGGCTGAATT TGCCTATTTGGCATATGGAAGCTTGCACTAAAGCTCAGTGTTGTGCCTTCCCTTGCTAGCATCGATCATTGCCCTTTTTG TTGGATTTCAATATGAAATGAATTTTGTTTTTCATCAGTCATTACGAAATGAATGAAGTAATTAAGTTTGCTTAGCACAC ATGTAGAATACAATCAAATAACAAGCATTTCAGGAATTTGAGGAGTAAAAGTTGAGCTGTTAGAACTCGAACTGCATGGT TGATGTGTACCCAAGTGTGTTAAGGTGATTAGCAATGGCTTTGTTCATGGGTGGTGGACCGCACCTAAGTATCTGCAATA AGGAACCATATTTAAAATTATATATAGGTGGTGAATATAATTTGATCTAGCAATACATAGTCAATGTGAAAAAGAATTTT GATTCCTTTCTTATTTGTTCAACCTGGATATCTGGGGACGGTGCTGGACAATGGGAGTCAATCATCTCCTTCGATATGAA CCCAACCCCTCCATTCCATTCAGTAGGAGGCTGTCAAGTGTTGAAAATATCAAACATTTTACACTGAAGAGCTAATTACT GATAGCTATGAGCAAAATTTTATGCTACTCCACTAAAATTGGGTTAATAATAAGAATTTGGAGTAACTTAGTATCCATGG GGTCATATATTCATGTTTAGTTCTACCAATGTAAAAAAAAAACCAACAACTAATATTTATTGTTGACAATAAAGCCTTTT ATCAATTACTAACCAGAAACCATATCATATGATATGATAAAATGAAATTTTGCAAAGAAATCCTTATTTCAAATTTCCTT TTTTTTTTTTTTTTGTCTTAGTTGGGTGTAAATCTGTTTGTGAAACTGCAACAGTTTTTCCCAACATGACTTTCGTGGGT CTTAAACTTGTGTTATCGCTCGTACTGGGTTAAATTTGTGTACCACTAAATTAACACATTGGCAATTTGATACCTCTGAA TTTGCACTGGTATTTCATATAATATAATCTTTTTTTCAGAGATCGTATAATTAAGACGGATACTAGAAATAATGGACCAT GCATGTTACTAGTTGTAAGAAAGGAACAAATTGTCATCTTTTGGATAGAGCAACCAACCTTGTTAAGAACATGGTAGAGT TGGAATCTGTAAGGGTATATGTTCGCAAAGTTGTCTAGTTCTTCCTGCAGCACCAAACATATCAATCACAATAGCATTTT TTGTTGACAAAAAAAAAGTTGTCTATATGACCCATGAGAAAGTTTGGGTTAAATAACATACCATTCAATCACATTGGAGA TAAGTGAGTTGGAAAATAATTAATAAATAAAATATAGAAATTCCAACTCACTTATCTTCAATGTGATTGGATGATGAGTT ATTTAACCAAAACTTTTTCATGGGTCATTTAGACAACCCAACAAAAAACAATAACATTTTTAAATTCGGATTATTCTTCA AACCTTTCCTTTTCTTTTTTTCGCTTTTACTTGTCGAGAGAGTTTTCTTTTAAATATTTTTACCATGTTAAAAATCGGGA GAAAGTAATTTTCAAAAGAAAAAATTAAGAGAGAAGAGCCAATCTTATTCTTATCCCAAAATCAATGAGTAATGAGTAAT TTTGTGGAATAACATTTATCTCATTTTTTTCTAACCCAGCAAAAAGTATGTATGATGTAACTCTTTTTTGTCAAAAGTTC ACTTTTCTAGGTAAGGGTATGCCAATAATAGTGGCTAATCCCTTGTTACATGTGCTCACACTAAACCATAAACGAATAGC CACAAAATGTGCTTCATTCCCATGACCGATGATCGAATTCACAATCTCATAATTAAAGGATGAGATTAGCTAACTAAATG ACACATGTTAATCAACTTATTTTTAATCGAAAGAAAATGAGGCTAAGCAACCGAAGTGGGATTTGGTAACAACTAACAAC GTTACCTTTTTCTCCCTTAATTGTTTTTTCTCTAAATCAGGAAGGAAACAAAGCTTAAGGGAAGTATTTGGTAACTAGGT TACCTTTAAAAGAATATCGTCCACAGTCACATTGGCGTAAATGAGGTACACCTTTGTTTTGTCCTTAGGATTTTCTAGTA TGGCTCTTATTAGCTG
CDS sequence (LotjaGi3g1v0303100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCGGAAACTGCTTACCGGCGGTGAAGCTCACCGGAAGTGGCCGGCCGGTACTATTACCGAACGAGATCGAGTGCTT CTTCCTCTCCGGCGTCGACCTTCTCTGCGAAGACGAACCCAACTCCTGGTTCCCTCACCTCAAATCCGGCCTCCTCATCC TCACCACCCACCGCCTCCTCTGGCTCCCCGAACCCGCCGACGGCGGCACTTCCTCCGCTGTCCACCTCGCCGCGATCTCC CACATCTTCCCTCACAAGAAGTCCCTCAAGTCCGTCTTCGCCTCGCCTAGGGTCCGTTTCCAGGTTTCGCCGTCGCCGGA GGGCGGAGTTGCTGCATCGGGGTCGAGGTCTGTGGTGGCCACTATTGTGGTGAGGGGGAAGGGGGAATTCGACGCGTTTG TGGCTAAGTTTTGGGAGAATTGGCGCGCCAGGGCGTGGGAGGAGGCGGAGAGTGGTCAGAGTTCGGGGGCGAATGTGGCG GCGACGGCGGCAACGTCATCGTCGTCGGGTGGGATTTATGGGAGGGACGGGACGGTGAGGATGGTGGGAGTGTCGGGGAT ATTGAGGAAGGAGCAGGAAATGTGGGAGAGTACTGATAAGAGCTTGCAGGATGCTTTTCAGGATTTGAATGCTCTCATGA GCAAGGCTAAAGAAATGGTGATGCTAGCAGAGAAAATGAGGCAAAAACTTTTGTCTGGCTCAAATTCTCAAACCAATGCA ACTAATGAGGAGGAGATGGGTACAAAGGAAGAGATGCAAGATTGGTTATTGAGCGTTGGTATAATATCCCCTGTTACCAA AGAGTCTGCGGGTGCTATGTATCATCAGCAGTTATCTCGTCAGTTGGCAGATTTTGTTAAAGTTCCACTTGAGAGAGCTG GAGGAATTATCAATCTTATTGATATTTATTGTCTCTTCAATCGTGCTCGTGGCACAGAATTGATCTCACCTGATGATTTG TTGCAAGCATGCTCTTTGTGGGAAAAGTTTGATGTCCCAGTCGTTCTACGGAAGTTTGATAGAGGAGTCATGGTAATACA GACTAAGTCCCACAGTGATGAGGAGGCAAGTTTATTTTATCTTTTCATCTGTGGTTATTTTTATATCTGTTGA
Protein sequence (LotjaGi3g1v0303100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAGNCLPAVKLTGSGRPVLLPNEIECFFLSGVDLLCEDEPNSWFPHLKSGLLILTTHRLLWLPEPADGGTSSAVHLAAIS HIFPHKKSLKSVFASPRVRFQVSPSPEGGVAASGSRSVVATIVVRGKGEFDAFVAKFWENWRARAWEEAESGQSSGANVA ATAATSSSSGGIYGRDGTVRMVGVSGILRKEQEMWESTDKSLQDAFQDLNALMSKAKEMVMLAEKMRQKLLSGSNSQTNA TNEEEMGTKEEMQDWLLSVGIISPVTKESAGAMYHQQLSRQLADFVKVPLERAGGIINLIDIYCLFNRARGTELISPDDL LQACSLWEKFDVPVVLRKFDRGVMVIQTKSHSDEEASLFYLFICGYFYIC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | 5 | 127 | 123 | 1.52E-19 | – | |
| PANTHER | 7 | 355 | 349 | 5.3E-114 | ||
| ProSiteProfiles | 9 | 153 | 145 | 10.642 | ||
| Pfam | 11 | 102 | 92 | 1.6E-10 | ||
| Gene3D | 19 | 153 | 135 | 1.3E-7 | ||
| Pfam | 182 | 354 | 173 | 1.6E-32 | ||
| SUPERFAMILY | 264 | 347 | 84 | 1.54E-25 | ||
| Gene3D | 270 | 349 | 80 | 6.6E-35 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | ESCRT II complex | An endosomal sorting complex required for transport and functions downstream of ESCRT I complex. It consists of the class E vacuolar protein sorting (Vps) proteins and is required for the membrane recruitment of ESCRT III complex and binds to ubiquitinated cargoes. | ||
| Molecular function | Phosphatidylinositol-3-phosphate binding | Interacting selectively and non-covalently with phosphatidylinositol-3-phosphate, a derivative of phosphatidylinositol in which the inositol ring is phosphorylated at the 3' position. | ||
| Biological process | Endosome transport via multivesicular body sorting pathway | The directed movement of substances from endosomes to lysosomes or vacuoles by a pathway in which molecules are sorted into multivesicular bodies, which then fuse with the target compartment. | ||
| Molecular function | Ubiquitin binding | Interacting selectively and non-covalently with ubiquitin, a protein that when covalently bound to other cellular proteins marks them for proteolytic degradation. |
Expression pattern of LotjaGi3g1v0303100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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