Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi3g1v0303100.2

Overview

Field Value
Gene ID LotjaGi3g1v0303100
Transcript ID LotjaGi3g1v0303100.2
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Vacuolar protein sorting-associated protein 36; TAIR: AT5G04920.1 EAP30/Vps36 family protein; Swiss-Prot: sp|Q9FF81|VPS36_ARATH Vacuolar protein sorting-associated protein 36; TrEMBL-Plants: tr|V7AJ01|V7AJ01_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0303100
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:63246919..63253069) extracted from Lotus japonicus Gifu genome v1.2.

CTCGTACTCTCATGTGTTAACAAGTTTTACAACTTAAAAAAAAAAACAAGTTTTACATGTACTACATCTTATCAAAATTC GTTTTTTCAGTTTTTGTTACATCATAAATGAATTATGCAAAGAAGTGAAAGTGATTTTGATGAACGGTCAAAGGGTCACA GTTCAACTCCAATTTGAACTGAAACCTTGAAACTTTCTCCGATGGCCGGAAACTGCTTACCGGCGGTGAAGCTCACCGGA AGTGGCCGGCCGGTACTATTACCGAACGAGATCGAGTGCTTCTTCCTCTCCGGCGTCGACCTTCTCTGCGAAGACGAACC CAACTCCTGGTTCCCTCACCTCAAATCCGGCCTCCTCATCCTCACCACCCACCGCCTCCTCTGGCTCCCCGAACCCGCCG ACGGCGGCACTTCCTCCGCTGTCCACCTCGCCGCGATCTCCCACATCTTCCCTCACAAGAAGTCCCTCAAGTCCGTCTTC GCCTCGCCTAGGGTCCGTTTCCAGGTTTCGCCGTCGCCGGAGGGCGGAGTTGCTGCATCGGGGTCGAGGTCTGTGGTGGC CACTATTGTGGTGAGGGGGAAGGGGGAATTCGACGCGTTTGTGGCTAAGTTTTGGGAGAATTGGCGCGCCAGGGCGTGGG AGGAGGCGGAGAGTGGTCAGAGTTCGGGGGCGAATGTGGCGGCGACGGCGGCAACGTCATCGTCGTCGGGTGGGATTTAT GGGAGGGACGGGACGGTGAGGATGGTGGGAGTGTCGGGGATATTGAGGAAGGAGCAGGAAATGTGGGAGAGTACTGATAA GAGCTTGCAGGATGCTTTTCAGGATTTGAATGCTCTCATGGTAATGTGTCTATGTCTATATTGTTTTTGATAATTTTGAT AATTTGCTGCTTGTTGGACCAAATTAGTGGTATGTATGAGGTTTTGGTAGAAGGAAGATAACTAGATGAATTGGATTGGA TTGAATTTTGTTTCCCAAAGTCTATTTGGTTTCGATTTAATGGTCGAGGGAGCTTTAATTATGGCTTTGATTAATAGGAT TCTGTTCAGTATTCACAAGTGCATCATTTTTGAAATCTTAATGTTTTATCATGGCTTGCTTGGGCCATGATAGTAATGAC GGTGACGTTGGATCTATATAGCTGAACTCACTCAGTGGGAAATGCTAATATGCTTTGGTTCTTGTTGTTATATGCTTTTC TTGGGTCATTAGTTACAAGGAAATATTTGGTGGTGGTTGCTATGTTTGCGTATATATAAGCTGCATGTTTATATCATGCT GGCTAAGGCATTCTAAACAATATTATTCCTGCAAACTAATCATGTGGATTTATGAAATTTTATTTCCGTCTTGTCTTGAG GTTTAGGCGGTGTAAATTATGTATGTGGAGTAATTTGGGGACACTTAGTTAAGCAAAAGGGAAACATCACTCTATTTGAT TTTGGTCCAGGGAAGTGAATGCTAATCCAATAAACAGAACCTCACTAGTTTTGTGTCAATTTTGTAGGTGTACTTTTGAG CTGAGTTTTAGCTTATGTTTTGCAAACAGACGTTAAACAGTTGATTCATCTGCTTGATTATGACAATTGTAGTTATCTCT AGAATTGCTACTATGCAGAAATTCTTTAACTATTTCATTTTTGGTTCATATTAAGCTTAAACTGCTTTATGTCTTGGGAT GATGCTGAATTTGCAGAGCAAGGCTAAAGAAATGGTGATGCTAGCAGAGAAAATGAGGCAAAAACTTTTGTCTGGCTCAA ATTCTCAAACCAATGCAACTAATGAGGAGGAGATGGGTACAAAGGAAGAGATGCAAGATTGGTTATTGAGCGTTGGTATA ATATCCCCTGTTACCAAAGAGTCTGCGGGTGCTATGTATCATCAGCAGTTATCTCGTCAGGTACTATCATCCGTTCTTGT AATAATGAGTTATTTCCGTTGTTATCACAAGATCGTGCGAATTGATGTGCTTTTAAGAAAGATTGTTGTTATTACTTCCA GTATTTTCGCGTTAACATTCAAAACACTGATTTTATTTACACAATTCACAGTTGGGGATTTTTATCATGGAGCCTTTTAT TCCTTTCATTTTTAATGGGGGATCTCTCATGATGTCCTGTTCACTGATTTAAAAATAATCATGTCCAAAGTCTCTGGACA TTTCAAGTTTTGCTAGTGTACAGGAACAATGAAACATTCATGAAATTGAAATATGATTATAGTGTTGAACCATATGTTGA TGAACATGTTGAATATGGATTTTTGTTTGCCTCATTGCCTTTGGTGATGGCAATGAAAGATTGACATGGGGGTACTATCA AGGGCAGATGGTGTTGGAGAGGAAAGTATACTCAAAACCAAGCCAAAAGGAATAACATGGGCTAAGTCAGAGGAATAGTA GAGTAGCATGGATCAAATAGATAATAGGAGATTTCTTGTACATAAAACAATAGTAGAAATCATGCTGCACACAAAGTATT GTAACTTGTAAGACAAGGGTTCTACTTCTTTGCTGTAAAAAATTGTGGCCTTTTGACTTAATTGTTGTGCAAGAGCCTAG GGAGAGATCTCTTATTCATCCTCTCTATTCTTTGGGAGGAAGCTATGAGCAGTTATTTTTGATAGTTTTCTTACTAACAT GCTTTCAAGCTGCATCTTCATATTATTTAATATGTTTTCTCACTTGAATAGAAGTAATGGGAAAAATGTTTTCAAGGTTT TGGAGTTATTATTTTCTGATGTATAAAAGAAAAGGTTTTGGAGTTATTGATGCTTGCTTGGCTGGTTGCATTTTGGTGGT GTGCTGTTCGTTTAAAATATTCTAATTTGTCCTTACTAATACGTAGTTGGCAGATTTTGTTAAAGTTCCACTTGAGAGAG CTGGAGGAATTATCAATCTTATTGATATTTATTGTCTCTTCAATCGTGCTCGTGGCACAGGTTTCAGTACTCTGCCTTGT ATGTTCCCTCAGACATGATTATCTTTCAAGTTGTACATTTGAATTAATACCTCCCTTGTTTTGGTTGTCTAATAAACAGA ATTGATCTCACCTGATGATTTGTTGCAAGCATGCTCTTTGTGGGAAAAGTTTGATGTGTATGTATTATCTTCTATTTTAA TTACATCTGTTACCATGTTCTTGTTTGTTGTACTTCCATACATTATGTTAAATTGTTTCAGCCCAGTCGTTCTACGGAAG TTTGATAGAGGAGTCATGGTAATACAGACTAAGTCCCACAGTGATGAGGAGGCAAGTTTATTTTATCTTTTCATCTGTGG TTATTTTTATATCTGTTGAAGGTTTTACGAATTATCACTGTTATTAACTTGGGAAAAGCATCCTTGTCTTTTGGTTGTCA TCTTATGGATTTTGGGCTGCACTCTAATTGTGAGAGATCATGTTGGTGGGTTATTGTTGAATAGCATTAGCTTGAATTTA TACTAGTTATGTTTTCCAATTAGCCCGGGGCTCTTTAGACTTTTGCTTAGGTTCTTCCCAGAAAATGTAATAGGTTGGGT GGATCCCACACGTGAGTGGGGATCCATGCCATGTCAACTATTTATGACTGTGGTAACTGGTAAAAGCATTGTTGTATAAA CCACACCACCCTGGCTAGCCAGATCACAAAGTTAGTGATCTGACTTTTTGGTTGGTGAGTATGAATTTTTCTGACCGTTT TTGAAAATGAACTGGTTTAAATCGGGTTGAACTGATGTTGAACTTAAAAAGATGAGCCATTATGATGAGCTTTGCAAACT TAAGGAAGAAATATGAGCATGAAAAAGTGGAAGAAATCAAATCTCTGTTTTTGCAGAATGGAAGTATGTGGATTGTGGAA ACTATAAACGAGGTTGAGTTTGGTTCTTCTGCTGGGACCTTCTTTTTGTGCTTCATTTTTGCATCAAGAAGTATTCCTAG TTTCTGATTTAGCTTTGTGCTTCCTTTTTTTTGCTTTTCTTGCTTTGTATACTTTCATTGACTTTGATTCTGATTAGTTT AGGGTTCTTTTATTATGCTTGCACGTTTAGGTTATGGTTAACTTCACTATGGAGGACAGAATTGTCAGTTCCTTGTTAGT CTGTTCAATGAGGTAGTTGGAGCTAGTTAGGATTAGTTGGGACTAAGATAGATGGAGAGGTAGGCTATGTTATATATAAA TAATAGGAAGGGATGAGACTTGAGAGCGAGACTAGCTAGTCATTTTATGAGAGAGTTGGGGCCTTAGGTTAAAGAGATAC TGACCCTCAAAGATCTGCAGCGCCGTATCTGTAATCATGGGAGATTTCCTCTATTCTTTCTAGTTTAGTACAAGGTTCCT AGCATTTCTCTTGCATAAATTTTGTTTACTGTTTGACTGTTTGTATTTCTTCTTGTTAGACCACTGGATTAGCGATTGAA CTAGTGACCAGTTGATCTGACCTTTTGAATGCTGGATCTCCCATTCTTAATTTTGAGAAGATTTTTATATCTGTAACAGA CTATGCAATATCTGCCAAATTTTGTTGATTTCCATTAACTGATCCTCCCCTTTGCTATATAAATCTCTTGGGGTGTGATC TTTCAATGGGTTGCTACACAGACTTGAAGTTATATCTTAGATTAATTAATTCATTCTTCTGTCCTGTGTTTTTATATTGG ATAAGGTAAAAGAATGTGTTGTATATAACTTTTGTAAGGTTTTCAATTTTCATTTACGTTTTTGTTATTGAAATTAACTT CTACTAATGTTGAACTGGAAGATGGTCAAATTAGACTTCATTAACAAACTGCTATTGGTGTAGGTTTTCGCTAAAATCAA GGTGCTTGTTATGAAGCCTGATGCTCTCCGAGCTGGAATAAGTGCTAGTGACGCTGCAATGACACTGGCAGTTGCCCCAG CAATGGCAAAGGAACATCTCTTGTCTGCTGAGAGCAAGGGTACACTGCTGTACCACTACTTTCCACAATATGTTCAATTA AATACCTGTATTCTGATTTTTTGCCAAATCTTTCCCAGGTATACTGTGCAGAGATATAAGCCCTGATGGATTTCGCTTTT ATATTAATTTGTTCCCTGAAATCGATCGAGATGATATGCATGTGTAAGTAAACTTTCTATATACGTTGTTTTGGCTTCCT TTTACATTAATTGCTATCCCTGTTCCTACATCTCATTGGTTTCTAGTTTAATAGTTCAATGATAGAAGATGATTTTGTTC ATTGATTGATTTCATAATCATAAGTTGTTTTGTGATATTTGGTTGCACACTGCCATTTATACAGAGTGAAAGATCAAGGG ATTTATGCCTCCTGGGTAAGTGCAAACCATGCTCATGGTTAGAGTTGCAAGCTTGTGCAATTCAATACAGGGTATTGACA AATTTTGAGTGTTAATAACTGGCCTGGCTTGAGCTAGTTCATGTGCCTGTTAGTCTGTTGCCCCTTTTAATAATTGTATA TAAGGGAGGGGCATATTTGTTGAGTATAAGATAGGAGGAGTTAATTTTGATCATATAACCTTCCATGGATAGTCAAGTTG ATTTTTATTTGATCAAATTTGCCAGATTTTGATTGTTAAGAACTGGCCCCTCTTGAGCTAGTTCACGTCTGTTTTGCTCC TTCTAATCATTATATACAAGGGGCATATTTGTTTTGATCATTTATTTATGTTTTATAGTTAAGGTCAATTCCTCTCATGA AAAGCTTCCACTCTTTCTCTATCTCACTCTCTCCACAGAGTTTTAATTTGCTTCAGCCAATGTTAGATTTACATTGTAGA GAACATTTAACCATGAGAAAGATGAAAGATCTGATGACATTTTATTCATTTGAATTCGGCTAGCACTGGCTGAATTTGCC TATTTGGCATATGGAAGCTTGCACTAAAGCTCAGTGTTGTGCCTTCCCTTGCTAGCATCGATCATTGCCCTTTTTGTTGG ATTTCAATATGAAATGAATTTTGTTTTTCATCAGTCATTACGAAATGAATGAAGTAATTAAGTTTGCTTAGCACACATGT AGAATACAATCAAATAACAAGCATTTCAGGAATTTGAGGAGTAAAAGTTGAGCTGTTAGAACTCGAACTGCATGGTTGAT GTGTACCCAAGTGTGTTAAGGTGATTAGCAATGGCTTTGTTCATGGGTGGTGGACCGCACCTAAGTATCTG
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0303100.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCCGGAAACTGCTTACCGGCGGTGAAGCTCACCGGAAGTGGCCGGCCGGTACTATTACCGAACGAGATCGAGTGCTT CTTCCTCTCCGGCGTCGACCTTCTCTGCGAAGACGAACCCAACTCCTGGTTCCCTCACCTCAAATCCGGCCTCCTCATCC TCACCACCCACCGCCTCCTCTGGCTCCCCGAACCCGCCGACGGCGGCACTTCCTCCGCTGTCCACCTCGCCGCGATCTCC CACATCTTCCCTCACAAGAAGTCCCTCAAGTCCGTCTTCGCCTCGCCTAGGGTCCGTTTCCAGGTTTCGCCGTCGCCGGA GGGCGGAGTTGCTGCATCGGGGTCGAGGTCTGTGGTGGCCACTATTGTGGTGAGGGGGAAGGGGGAATTCGACGCGTTTG TGGCTAAGTTTTGGGAGAATTGGCGCGCCAGGGCGTGGGAGGAGGCGGAGAGTGGTCAGAGTTCGGGGGCGAATGTGGCG GCGACGGCGGCAACGTCATCGTCGTCGGGTGGGATTTATGGGAGGGACGGGACGGTGAGGATGGTGGGAGTGTCGGGGAT ATTGAGGAAGGAGCAGGAAATGTGGGAGAGTACTGATAAGAGCTTGCAGGATGCTTTTCAGGATTTGAATGCTCTCATGA GCAAGGCTAAAGAAATGGTGATGCTAGCAGAGAAAATGAGGCAAAAACTTTTGTCTGGCTCAAATTCTCAAACCAATGCA ACTAATGAGGAGGAGATGGGTACAAAGGAAGAGATGCAAGATTGGTTATTGAGCGTTGGTATAATATCCCCTGTTACCAA AGAGTCTGCGGGTGCTATGTATCATCAGCAGTTATCTCGTCAGTTGGCAGATTTTGTTAAAGTTCCACTTGAGAGAGCTG GAGGAATTATCAATCTTATTGATATTTATTGTCTCTTCAATCGTGCTCGTGGCACAGAATTGATCTCACCTGATGATTTG TTGCAAGCATGCTCTTTGTGGGAAAAGTTTGATGTCCCAGTCGTTCTACGGAAGTTTGATAGAGGAGTCATGGTAATACA GACTAAGTCCCACAGTGATGAGGAGGTTTTCGCTAAAATCAAGGTGCTTGTTATGAAGCCTGATGCTCTCCGAGCTGGAA TAAGTGCTAGTGACGCTGCAATGACACTGGCAGTTGCCCCAGCAATGGCAAAGGAACATCTCTTGTCTGCTGAGAGCAAG GGTATACTGTGCAGAGATATAAGCCCTGATGGATTTCGCTTTTATATTAATTTGTTCCCTGAAATCGATCGAGATGATAT GCATGTAGTGAAAGATCAAGGGATTTATGCCTCCTGGGTAAGTGCAAACCATGCTCATGGTTAG
Download CDS Sequence

Protein sequence (LotjaGi3g1v0303100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAGNCLPAVKLTGSGRPVLLPNEIECFFLSGVDLLCEDEPNSWFPHLKSGLLILTTHRLLWLPEPADGGTSSAVHLAAIS HIFPHKKSLKSVFASPRVRFQVSPSPEGGVAASGSRSVVATIVVRGKGEFDAFVAKFWENWRARAWEEAESGQSSGANVA ATAATSSSSGGIYGRDGTVRMVGVSGILRKEQEMWESTDKSLQDAFQDLNALMSKAKEMVMLAEKMRQKLLSGSNSQTNA TNEEEMGTKEEMQDWLLSVGIISPVTKESAGAMYHQQLSRQLADFVKVPLERAGGIINLIDIYCLFNRARGTELISPDDL LQACSLWEKFDVPVVLRKFDRGVMVIQTKSHSDEEVFAKIKVLVMKPDALRAGISASDAAMTLAVAPAMAKEHLLSAESK GILCRDISPDGFRFYINLFPEIDRDDMHVVKDQGIYASWVSANHAHG
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SUPERFAMILY
SSF50729
5 127 123 2.21E-19 –
PANTHER
PTHR13128
7 421 415 1.3E-137
IPR037855
ProSiteProfiles
PS51495
9 153 145 10.642
IPR021648
Pfam
PF11605
11 102 92 2.2E-10
IPR021648
Gene3D
G3DSA:2.30.29.30
19 153 135 1.8E-7
IPR011993
Pfam
PF04157
182 406 225 2.0E-40
IPR040608
Gene3D
G3DSA:1.10.10.10
270 349 80 8.9E-35
IPR036388
SUPERFAMILY
SSF46785
310 422 113 1.84E-26
IPR036390
Gene3D
G3DSA:1.10.10.10
350 421 72 6.7E-21
IPR036388

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000814
Cellular component ESCRT II complex An endosomal sorting complex required for transport and functions downstream of ESCRT I complex. It consists of the class E vacuolar protein sorting (Vps) proteins and is required for the membrane recruitment of ESCRT III complex and binds to ubiquitinated cargoes.
Subterm of
Part of
GO:0032266
Molecular function Phosphatidylinositol-3-phosphate binding Interacting selectively and non-covalently with phosphatidylinositol-3-phosphate, a derivative of phosphatidylinositol in which the inositol ring is phosphorylated at the 3' position.
Subterm of
GO:0032509
Biological process Endosome transport via multivesicular body sorting pathway The directed movement of substances from endosomes to lysosomes or vacuoles by a pathway in which molecules are sorted into multivesicular bodies, which then fuse with the target compartment.
Subterm of
GO:0043130
Molecular function Ubiquitin binding Interacting selectively and non-covalently with ubiquitin, a protein that when covalently bound to other cellular proteins marks them for proteolytic degradation.
Subterm of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0303100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…