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LotjaGi3g1v0303100.3

Overview

Field Value
Gene ID LotjaGi3g1v0303100
Transcript ID LotjaGi3g1v0303100.3
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Vacuolar protein sorting-associated protein 36; TAIR: AT5G04920.1 EAP30/Vps36 family protein; Swiss-Prot: sp|Q9FF81|VPS36_ARATH Vacuolar protein sorting-associated protein 36; TrEMBL-Plants: tr|V7AJ01|V7AJ01_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0303100
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:63247695..63252868) extracted from Lotus japonicus Gifu genome v1.2.

ATGGCCGGAAACTGCTTACCGGCGGTGAAGCTCACCGGAAGTGGCCGGCCGGTACTATTACCGAACGAGATCGAGTGCTT CTTCCTCTCCGGCGTCGACCTTCTCTGCGAAGACGAACCCAACTCCTGGTTCCCTCACCTCAAATCCGGCCTCCTCATCC TCACCACCCACCGCCTCCTCTGGCTCCCCGAACCCGCCGACGGCGGCACTTCCTCCGCTGTCCACCTCGCCGCGATCTCC CACATCTTCCCTCACAAGAAGTCCCTCAAGTCCGTCTTCGCCTCGCCTAGGGTCCGTTTCCAGGTTTCGCCGTCGCCGGA GGGCGGAGTTGCTGCATCGGGGTCGAGGTCTGTGGTGGCCACTATTGTGGTGAGGGGGAAGGGGGAATTCGACGCGTTTG TGGCTAAGTTTTGGGAGAATTGGCGCGCCAGGGCGTGGGAGGAGGCGGAGAGTGGTCAGAGTTCGGGGGCGAATGTGGCG GCGACGGCGGCAACGTCATCGTCGTCGGGTGGGATTTATGGGAGGGACGGGACGGTGAGGATGGTGGGAGTGTCGGGGAT ATTGAGGAAGGAGCAGGAAATGTGGGAGAGTACTGATAAGAGCTTGCAGGATGCTTTTCAGGATTTGAATGCTCTCATGG TAATGTGTCTATGTCTATATTGTTTTTGATAATTTTGATAATTTGCTGCTTGTTGGACCAAATTAGTGGTATGTATGAGG TTTTGGTAGAAGGAAGATAACTAGATGAATTGGATTGGATTGAATTTTGTTTCCCAAAGTCTATTTGGTTTCGATTTAAT GGTCGAGGGAGCTTTAATTATGGCTTTGATTAATAGGATTCTGTTCAGTATTCACAAGTGCATCATTTTTGAAATCTTAA TGTTTTATCATGGCTTGCTTGGGCCATGATAGTAATGACGGTGACGTTGGATCTATATAGCTGAACTCACTCAGTGGGAA ATGCTAATATGCTTTGGTTCTTGTTGTTATATGCTTTTCTTGGGTCATTAGTTACAAGGAAATATTTGGTGGTGGTTGCT ATGTTTGCGTATATATAAGCTGCATGTTTATATCATGCTGGCTAAGGCATTCTAAACAATATTATTCCTGCAAACTAATC ATGTGGATTTATGAAATTTTATTTCCGTCTTGTCTTGAGGTTTAGGCGGTGTAAATTATGTATGTGGAGTAATTTGGGGA CACTTAGTTAAGCAAAAGGGAAACATCACTCTATTTGATTTTGGTCCAGGGAAGTGAATGCTAATCCAATAAACAGAACC TCACTAGTTTTGTGTCAATTTTGTAGGTGTACTTTTGAGCTGAGTTTTAGCTTATGTTTTGCAAACAGACGTTAAACAGT TGATTCATCTGCTTGATTATGACAATTGTAGTTATCTCTAGAATTGCTACTATGCAGAAATTCTTTAACTATTTCATTTT TGGTTCATATTAAGCTTAAACTGCTTTATGTCTTGGGATGATGCTGAATTTGCAGAGCAAGGCTAAAGAAATGGTGATGC TAGCAGAGAAAATGAGGCAAAAACTTTTGTCTGGCTCAAATTCTCAAACCAATGCAACTAATGAGGAGGAGATGGGTACA AAGGAAGAGATGCAAGATTGGTTATTGAGCGTTGGTATAATATCCCCTGTTACCAAAGAGTCTGCGGGTGCTATGTATCA TCAGCAGTTATCTCGTCAGGTACTATCATCCGTTCTTGTAATAATGAGTTATTTCCGTTGTTATCACAAGATCGTGCGAA TTGATGTGCTTTTAAGAAAGATTGTTGTTATTACTTCCAGTATTTTCGCGTTAACATTCAAAACACTGATTTTATTTACA CAATTCACAGTTGGGGATTTTTATCATGGAGCCTTTTATTCCTTTCATTTTTAATGGGGGATCTCTCATGATGTCCTGTT CACTGATTTAAAAATAATCATGTCCAAAGTCTCTGGACATTTCAAGTTTTGCTAGTGTACAGGAACAATGAAACATTCAT GAAATTGAAATATGATTATAGTGTTGAACCATATGTTGATGAACATGTTGAATATGGATTTTTGTTTGCCTCATTGCCTT TGGTGATGGCAATGAAAGATTGACATGGGGGTACTATCAAGGGCAGATGGTGTTGGAGAGGAAAGTATACTCAAAACCAA GCCAAAAGGAATAACATGGGCTAAGTCAGAGGAATAGTAGAGTAGCATGGATCAAATAGATAATAGGAGATTTCTTGTAC ATAAAACAATAGTAGAAATCATGCTGCACACAAAGTATTGTAACTTGTAAGACAAGGGTTCTACTTCTTTGCTGTAAAAA ATTGTGGCCTTTTGACTTAATTGTTGTGCAAGAGCCTAGGGAGAGATCTCTTATTCATCCTCTCTATTCTTTGGGAGGAA GCTATGAGCAGTTATTTTTGATAGTTTTCTTACTAACATGCTTTCAAGCTGCATCTTCATATTATTTAATATGTTTTCTC ACTTGAATAGAAGTAATGGGAAAAATGTTTTCAAGGTTTTGGAGTTATTATTTTCTGATGTATAAAAGAAAAGGTTTTGG AGTTATTGATGCTTGCTTGGCTGGTTGCATTTTGGTGGTGTGCTGTTCGTTTAAAATATTCTAATTTGTCCTTACTAATA CGTAGTTGGCAGATTTTGTTAAAGTTCCACTTGAGAGAGCTGGAGGAATTATCAATCTTATTGATATTTATTGTCTCTTC AATCGTGCTCGTGGCACAGGTTTCAGTACTCTGCCTTGTATGTTCCCTCAGACATGATTATCTTTCAAGTTGTACATTTG AATTAATACCTCCCTTGTTTTGGTTGTCTAATAAACAGAATTGATCTCACCTGATGATTTGTTGCAAGCATGCTCTTTGT GGGAAAAGTTTGATGTGTATGTATTATCTTCTATTTTAATTACATCTGTTACCATGTTCTTGTTTGTTGTACTTCCATAC ATTATGTTAAATTGTTTCAGCCCAGTCGTTCTACGGAAGTTTGATAGAGGAGTCATGGTAATACAGACTAAGTCCCACAG TGATGAGGAGGCAAGTTTATTTTATCTTTTCATCTGTGGTTATTTTTATATCTGTTGAAGGTTTTACGAATTATCACTGT TATTAACTTGGGAAAAGCATCCTTGTCTTTTGGTTGTCATCTTATGGATTTTGGGCTGCACTCTAATTGTGAGAGATCAT GTTGGTGGGTTATTGTTGAATAGCATTAGCTTGAATTTATACTAGTTATGTTTTCCAATTAGCCCGGGGCTCTTTAGACT TTTGCTTAGGTTCTTCCCAGAAAATGTAATAGGTTGGGTGGATCCCACACGTGAGTGGGGATCCATGCCATGTCAACTAT TTATGACTGTGGTAACTGGTAAAAGCATTGTTGTATAAACCACACCACCCTGGCTAGCCAGATCACAAAGTTAGTGATCT GACTTTTTGGTTGGTGAGTATGAATTTTTCTGACCGTTTTTGAAAATGAACTGGTTTAAATCGGGTTGAACTGATGTTGA ACTTAAAAAGATGAGCCATTATGATGAGCTTTGCAAACTTAAGGAAGAAATATGAGCATGAAAAAGTGGAAGAAATCAAA TCTCTGTTTTTGCAGAATGGAAGTATGTGGATTGTGGAAACTATAAACGAGGTTGAGTTTGGTTCTTCTGCTGGGACCTT CTTTTTGTGCTTCATTTTTGCATCAAGAAGTATTCCTAGTTTCTGATTTAGCTTTGTGCTTCCTTTTTTTTGCTTTTCTT GCTTTGTATACTTTCATTGACTTTGATTCTGATTAGTTTAGGGTTCTTTTATTATGCTTGCACGTTTAGGTTATGGTTAA CTTCACTATGGAGGACAGAATTGTCAGTTCCTTGTTAGTCTGTTCAATGAGGTAGTTGGAGCTAGTTAGGATTAGTTGGG ACTAAGATAGATGGAGAGGTAGGCTATGTTATATATAAATAATAGGAAGGGATGAGACTTGAGAGCGAGACTAGCTAGTC ATTTTATGAGAGAGTTGGGGCCTTAGGTTAAAGAGATACTGACCCTCAAAGATCTGCAGCGCCGTATCTGTAATCATGGG AGATTTCCTCTATTCTTTCTAGTTTAGTACAAGGTTCCTAGCATTTCTCTTGCATAAATTTTGTTTACTGTTTGACTGTT TGTATTTCTTCTTGTTAGACCACTGGATTAGCGATTGAACTAGTGACCAGTTGATCTGACCTTTTGAATGCTGGATCTCC CATTCTTAATTTTGAGAAGATTTTTATATCTGTAACAGACTATGCAATATCTGCCAAATTTTGTTGATTTCCATTAACTG ATCCTCCCCTTTGCTATATAAATCTCTTGGGGTGTGATCTTTCAATGGGTTGCTACACAGACTTGAAGTTATATCTTAGA TTAATTAATTCATTCTTCTGTCCTGTGTTTTTATATTGGATAAGGTAAAAGAATGTGTTGTATATAACTTTTGTAAGGTT TTCAATTTTCATTTACGTTTTTGTTATTGAAATTAACTTCTACTAATGTTGAACTGGAAGATGGTCAAATTAGACTTCAT TAACAAACTGCTATTGGTGTAGGTTTTCGCTAAAATCAAGGTGCTTGTTATGAAGCCTGATGCTCTCCGAGCTGGAATAA GTGCTAGTGACGCTGCAATGACACTGGCAGTTGCCCCAGCAATGGCAAAGGAACATCTCTTGTCTGCTGAGAGCAAGGGT ACACTGCTGTACCACTACTTTCCACAATATGTTCAATTAAATACCTGTATTCTGATTTTTTGCCAAATCTTTCCCAGGTA TACTGTGCAGAGATATAAGCCCTGATGGATTTCGCTTTTATATTAATTTGTTCCCTGAAATCGATCGAGATGATATGCAT GTGTAAGTAAACTTTCTATATACGTTGTTTTGGCTTCCTTTTACATTAATTGCTATCCCTGTTCCTACATCTCATTGGTT TCTAGTTTAATAGTTCAATGATAGAAGATGATTTTGTTCATTGATTGATTTCATAATCATAAGTTGTTTTGTGATATTTG GTTGCACACTGCCATTTATACAGAGTGAAAGATCAAGGGATTTATGCCTCCTGGGTAAGTGCAAACCATGCTCATGGTTA GAGTTGCAAGCTTGTGCAATTCAATACAGGGTATTGACAAATTTTGAGTGTTAA
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0303100.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCCGGAAACTGCTTACCGGCGGTGAAGCTCACCGGAAGTGGCCGGCCGGTACTATTACCGAACGAGATCGAGTGCTT CTTCCTCTCCGGCGTCGACCTTCTCTGCGAAGACGAACCCAACTCCTGGTTCCCTCACCTCAAATCCGGCCTCCTCATCC TCACCACCCACCGCCTCCTCTGGCTCCCCGAACCCGCCGACGGCGGCACTTCCTCCGCTGTCCACCTCGCCGCGATCTCC CACATCTTCCCTCACAAGAAGTCCCTCAAGTCCGTCTTCGCCTCGCCTAGGGTCCGTTTCCAGGTTTCGCCGTCGCCGGA GGGCGGAGTTGCTGCATCGGGGTCGAGGTCTGTGGTGGCCACTATTGTGGTGAGGGGGAAGGGGGAATTCGACGCGTTTG TGGCTAAGTTTTGGGAGAATTGGCGCGCCAGGGCGTGGGAGGAGGCGGAGAGTGGTCAGAGTTCGGGGGCGAATGTGGCG GCGACGGCGGCAACGTCATCGTCGTCGGGTGGGATTTATGGGAGGGACGGGACGGTGAGGATGGTGGGAGTGTCGGGGAT ATTGAGGAAGGAGCAGGAAATGTGGGAGAGTACTGATAAGAGCTTGCAGGATGCTTTTCAGGATTTGAATGCTCTCATGA GCAAGGCTAAAGAAATGGTGATGCTAGCAGAGAAAATGAGGCAAAAACTTTTGTCTGGCTCAAATTCTCAAACCAATGCA ACTAATGAGGAGGAGATGGGTACAAAGGAAGAGATGCAAGATTGGTTATTGAGCGTTGGTATAATATCCCCTGTTACCAA AGAGTCTGCGGGTGCTATGTATCATCAGCAGTTATCTCGTCAGTTGGCAGATTTTGTTAAAGTTCCACTTGAGAGAGCTG GAGGAATTATCAATCTTATTGATATTTATTGTCTCTTCAATCGTGCTCGTGGCACAGAATTGATCTCACCTGATGATTTG TTGCAAGCATGCTCTTTGTGGGAAAAGTTTGATGTCCCAGTCGTTCTACGGAAGTTTGATAGAGGAGTCATGGTAATACA GACTAAGTCCCACAGTGATGAGGAGGTTTTCGCTAAAATCAAGGTGCTTGTTATGAAGCCTGATGCTCTCCGAGCTGGAA TAAGTGCTAGTGACGCTGCAATGACACTGGCAGTTGCCCCAGCAATGGCAAAGGAACATCTCTTGTCTGCTGAGAGCAAG GGTATACTGTGCAGAGATATAAGCCCTGATGGATTTCGCTTTTATATTAATTTGTTCCCTGAAATCGATCGAGATGATAT GCATGTTGAAAGATCAAGGGATTTATGCCTCCTGGGTAAGTGCAAACCATGCTCATGGTTAGAGTTGCAAGCTTGTGCAA TTCAATACAGGGTATTGACAAATTTTGAGTGTTAA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0303100.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAGNCLPAVKLTGSGRPVLLPNEIECFFLSGVDLLCEDEPNSWFPHLKSGLLILTTHRLLWLPEPADGGTSSAVHLAAIS HIFPHKKSLKSVFASPRVRFQVSPSPEGGVAASGSRSVVATIVVRGKGEFDAFVAKFWENWRARAWEEAESGQSSGANVA ATAATSSSSGGIYGRDGTVRMVGVSGILRKEQEMWESTDKSLQDAFQDLNALMSKAKEMVMLAEKMRQKLLSGSNSQTNA TNEEEMGTKEEMQDWLLSVGIISPVTKESAGAMYHQQLSRQLADFVKVPLERAGGIINLIDIYCLFNRARGTELISPDDL LQACSLWEKFDVPVVLRKFDRGVMVIQTKSHSDEEVFAKIKVLVMKPDALRAGISASDAAMTLAVAPAMAKEHLLSAESK GILCRDISPDGFRFYINLFPEIDRDDMHVERSRDLCLLGKCKPCSWLELQACAIQYRVLTNFEC
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SUPERFAMILY
SSF50729
5 126 122 2.54E-19 –
PANTHER
PTHR13128
7 421 415 1.5E-137
IPR037855
ProSiteProfiles
PS51495
9 153 145 10.642
IPR021648
Pfam
PF11605
11 102 92 2.4E-10
IPR021648
Gene3D
G3DSA:2.30.29.30
19 153 135 1.9E-7
IPR011993
Pfam
PF04157
182 406 225 2.2E-40
IPR040608
Gene3D
G3DSA:1.10.10.10
270 349 80 9.5E-35
IPR036388
SUPERFAMILY
SSF46785
310 422 113 1.97E-26
IPR036390
Gene3D
G3DSA:1.10.10.10
350 421 72 7.1E-21
IPR036388

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000814
Cellular component ESCRT II complex An endosomal sorting complex required for transport and functions downstream of ESCRT I complex. It consists of the class E vacuolar protein sorting (Vps) proteins and is required for the membrane recruitment of ESCRT III complex and binds to ubiquitinated cargoes.
Subterm of
Part of
GO:0032266
Molecular function Phosphatidylinositol-3-phosphate binding Interacting selectively and non-covalently with phosphatidylinositol-3-phosphate, a derivative of phosphatidylinositol in which the inositol ring is phosphorylated at the 3' position.
Subterm of
GO:0032509
Biological process Endosome transport via multivesicular body sorting pathway The directed movement of substances from endosomes to lysosomes or vacuoles by a pathway in which molecules are sorted into multivesicular bodies, which then fuse with the target compartment.
Subterm of
GO:0043130
Molecular function Ubiquitin binding Interacting selectively and non-covalently with ubiquitin, a protein that when covalently bound to other cellular proteins marks them for proteolytic degradation.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0303100.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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