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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0315700 |
| Transcript ID | LotjaGi3g1v0315700.2 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Retinoblastoma-related protein; TAIR: AT3G12280.2 retinoblastoma-related 1; Swiss-Prot: sp|Q9SLZ4|RBR1_PEA Retinoblastoma-related protein 1; TrEMBL-Plants: tr|I1MIM1|I1MIM1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0315700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:66864230..66869676) extracted from Lotus japonicus Gifu genome v1.2.
TATCCGCATGCCATCCCCTTCCGCACTTTCAATGTATAATTTGTGTTCCGCACGTATCAATGCGGTGTGTAATTGATTCC CGCACATATAAGTGCGGTAAAATTGGGTGGCGAGAAAACGAATAGGGTTGGCATTAAAATCAATTCCCAAATCCATATCA GGTTGAGATTTGGTTAAGAAGTAGACTCAGAACAGGGGAAATGTCCATATATTTATTTCTGCTTGCTTGTAGACAGATTG TTTGAGGTTTAAATTGTGATTCTTTACCCATTTAAGTCTACATTGATGTGCTCTTTAATCACAGAATGGGCTGGCTTTGG ATGAGAAAAGCTGTAAAGAAGCAATGAATCTGTTTGGAAAAACCAAGCATATTCTACTGACAAATGTTTCATCAATGGGG AATGGAACGGTACATAAGTTCATTTTTATTTAAGTGCAAAATATAAATTGTATTGAAGTTTTTTATTTGAATTGATGAGG TTGTATAATTCTTTTCCAGTCTGAAGATGCAGAGCGGTACTGGTTTGCTTTTATTTTATACTCAGTCAAGAGATTGACTC AGAATAGTGAGGAGAGTGGGCAGGAAGAGGTTGAGAACACTGGGCTGACCTTGTGTCGTATATTGAGAGCAGCGAATCTT AAGTATTTTACTGACTTTTCTTTCTAGCATCTATGATTGAAGTTTACTGGCTTTTTTCCCTACTATATAAGTTTGTAGAT TGTCATATAAGTATATTACTTATTGTTATCATTTATCGTGTATTCAACAGCATTGCAGATTTTTCTAAAGAGCTTTCTCA GTTTGTTGTCAAGGCTGGTCAAATTTTAAGTAATCTATATGGCACGGATTGGGAAAATAGGCTTAAGGTATGACTAAGCA GGGAGTCATGATTACATTTTGCATAGTTTATGTTCATATGTGTGTATCAGCATGTGTGTGATGGTCTCTGTATTTTGTAT TCCTTGGAAGCCTTTTTTTTATAAAGCCATTATTTATTTTTCTATGTCTATACCAGGCAAAGGAGATGCATGCCAATGCT ACTCAGTTGGAGATCCTTAGCAAGTGAGTGGCCATTGTCTGCATCCACTTCTTAAATTAATGTCTTATGTGGCAATTAGT GCAACATGCGGACATTGCCATATGAGTTTACTTGACATGACATCTTATAACTTTGATGGTTCCAGGTACTATAAACGTAT ATTTGGAGAATTTTTTGTTGCACCTGATGCAAATGTCGAAAAGAACTCAATTGTTACTGTTCATGCATCTGATTACCATC GGTTTGGATGGTTACTTTTCTTGGCACTCCGTGCACATGCTTTCAGCCGTTTCATAAACTTGGTGACTTGCACCAATGGT TTAATTTCAATATTGGTAAGTTAGATTCTTGTAGCTTTAGTCTTTTTCAGCATTGGGTTTTCCCTGAATATGTTTCATAT CTTTTTCTTTTTCACATAGAAATAGAATAGACTAAAGAGAATTGTTAGAATTTCAAACACTTGAATTTTTAATAAAATAA TTGTTTGGTAACTCTTTTTGTTGTTGGGGGAACAAAGGAAACAATTTCTTACTTGCTGGGTGCATCTATTACAGGCTATC TTAATTATTCATGTCCCTGCTCGTTTTCGGAATTTCAACATTAACGACTCTTCACGCTTTGGTAATTGTCGTTGTTCTCC TTTCTTCCCTGCATTTTGTTTAGTTATTCTTGCTCTTTTTCATGGAGGCCTGCTCTATGCTCACACACTCATTTACTTGA AGGCTATTTTGGTGGTGGGCTAAAAGTGGCTTCTTCTAATTCTATCAACATTTCTTGCAGTTAAGAAAAGTAGCAAAGGT GTTGACCTCCTCGCTTCACTTTGCAAAATATATAACACTTCAGAAGATGAGTTGAGGAAGACCATGGAGATAGCCAATAG TTTAATAGCAGATATATTGAAGAAGAAACCTTGTTTGGCATCTGAATGCGAAACTGAAAACCTAGAGAATTTTGATAGAG GTTCACTCGCCTTCTGTCATTGGTTATTCATGCATCATTAATATATAATATCTTAAACTGGTGTTTATTATCCCTCTTTG CAGATAGCTTGACCTATTTTAAAGATCTGATGGAGGAATTGTCTCTGCCATCTAGTTTAAACATCTTAGAAAAAGACTAT GATGTCATGATTCATGACAAGGGTGAACTGGATGAGAGGCTATTCATTAATGAGGATGACAGCCTGCTAGCTTCAGGAAC CTTGTCTGGTAGTTCAGTTTCAGCCAGTGGTCTAAAGGTATCTTTAATGCAAAATTTGTTCTAACATGTAGTTTTATCTT GGATAAGACTAATACCTAAAATTACCTACCTTTGCACTCTGTAGAGGAAATTTGATTCGATAGCATCGCCTGCTAAGACT GTTATGAGTCCACTCTCACCCCACCGCTCTCCTGCGTCCAGTGCTAATGGCATTCCAGGTAGCACAAATTCAAAGATGGC AGCCGCCACCCCTGTAAGCACCGCAATGACAACTGCAAAGTGGCTTCGGACTGTCATTTCTCCACTTGCACCGAAGCCCT CACAAGAGCTAGAGCGATTCTTGGCATCATGTGACAGGGACATTACTAGTGATGTGGTGCGCAGAACTCTGATTATATTG CAGGCTATTTTTCCTAGTAGTCCTCTTGGGGAACGATGTGTAACTGGAGGCCTGCAAAGTGCAAATCTCATGGACAATAT ATGGGCCGAACAGCGAAGATTGGAAGCACTAAAGTTATACTATAGGGTATTGGAGGCAATGTGCAGAGCAGAAGCCCAAA CACTTCATGCAACTAATTTAACTTCTCTACTTACTAATGAGAGGTTTCATAGGTGTATGCTCGCATGTTCTGCAGAATTG GTCCTGGCAACTCACAAGACTGTAACAATGTTGTTCCCTGCAGTACTGGAGAGGACTGGGATTACAGCTTTTGATCTGAG CAAGGTGATTGAAAGTTTCATTAGACATGAAGAATCCCTCCCCAGAGAATTGAGGCGACATCTGAATTCATTGGAAGAAC GACTGTTGGAGAGCATGGTATGGGAAAAGGGTTCCTCAATGTATAATTCTTTGGCAGTTGCTAGACCTGCCCTTTCTGCA GAAATCAATCGTCTTGGACTGTTAGCTGAACCAATGCCATCACTGGATGAGATTGCAATAAATATTAACTTTTCTTATGG AGGGCTGCCTCCTGTTCCTACCTTGCCTAAATTTGAGACTTCACCAAGTAATGGCTCTCTGTCTCTCAGTTTGAAGATTT TAAGTCACATTTTTCTCTCTTCATATAATTCTTAGTTCATCATTGCATAAAGTTGTTGCCATGGATATCTATTAAGATCT ATAAATTTGTTCCTTCTCCATTCTCCCTTCACACCTTTTCTTTCTCAAAGAGCACATGTTCAAAAATACATATTTTTTCA ATTTCATTAACATGTCTATCATTGAAATGATTTCAGTTCAAAATGGGGATACCAGATCACCAAAGCGTCTCTGTACAGAA CATCGAAATGTGTTAGTGGAACGTAATTCTTTCGCTTCACCAGTAAAAGATCGGCTTCTTCCCTTCAGCAACCTTAAGTC AAAGCTACCACCTCCACCTCCTTTGCAGTCAGCATTTGCCAGGTATAACTTTGATGAGTCTGGAAGTAGCTATCTTTGTA ATTTTTCATTATTTTGACTTTTCACCACTTTGCTGTTGCCCTCTTTTGATGCTTTGTTGAATGTTTATTTCCGATAGTCC AACAAAACCAAATCCAGGAGGTGGAGGGGAAACATGTGCAGAAACTGGGATCAACATCTTTTTTGGCAAGGTATTTGGAC TTTCATCATACTCTTATAACCTTGATTGTTAAAAGGACTTGTGAGCTATATGTTACACAGTTTTGTCATTAAAAGTTCAT TTCATAACTAATTTTTTTAATTTAGTGGGCCCATAAGTTGCCTCTTGGAATTGGATTATTACATTACATCACGTCCACTT GAGTTATTACATCCTTGTTCTGATTCATGTGCTCGTTTAAGATTTAATGATTTGTTGCTTCTCTGGTTCATTTTAAGCAC TAAAACTTGTGTACACTTCCTTTGTTTCCTAGATTATTAAGTTGGGAGCAGTCAGAATAAGTGGCATGGTTGAAAGGCTA CAATTGTCCCAGCAGATAAGGGAGAATGTATACTGTCTTTTCCAGCGGATCCTAAATCAATGGACATCTCTTTTCTTCAA CCGCCATATTGATCAAATCATTTTGTGTTGCTTCTACGGAGTTGCAAAGGTTTCTCTTGAGGCTTAGAAACTTGATATTG CCATGTGTGTTTCTTCGATTATCTTTCTTCATTCCATACTCTTTTGCAGATTTCACAACTGAGCCTAACCTTTAGGGAGA TTATATACAACTACAGAAAGCAACCTCATTGCAAACCCCAAGTTTTTCGCAGTGTATTTGTTGATTGGTCATCGGCACGC CGTAATGGAGCATGTAAACAGAGAATAGGACAGGATCATGTCGACATCATTTCATTTTACAATGAAGTTTTCATTCCATC TGTAAAGCCACTGCTGGTTGAACTTGGCCCTGGTGGAGCAACCATGAAAAGTGACCGAAAGCCTGAAGTTAATAAAAATG ACGGTACTTGCTTATTAGCTAAACTGAAAGTAATTATATTCATGACTTCTATTGCTATGCTAGTTCCGCACTCCATTATT GGCTTGTATGCTTTTCTCTTTCCAGCTCACTGTCCCGGGTCTCCTAAAATATCACCTTTTCCAAGCCTCCCGGATATGTC CCCCAAAAAAGTGTCTGCCTCACACAATGTTTATGTCTCTCCGTTACGATCGTCTAAGGTACATATTTATTTGCCTGGCT TTCTTCTTTGGACTATCTGACATTGTACTGTAGAAGGAAGGAGCATGTGAGGACTGTAATTGTTGTGCAATAGTGCTGTT ACTAACATGATGCGGTTATAACTTGTCCTCAGGCTCACTACATAACACTTAAGCATATAGTTGAAATGGAAAATTTTGTT TTATTTTATGTAATATAAGTGCATTCATTGTTTATGTGCACACACAGATGGATGCTCTAATATCACATAGCTCAAAAAGC TATTATGCATGTGTTGGGGAGAGCACTCATGCATATCAGAGCCCTTCAAAAGACCTGACCGCAATCAATAACCGTTTGAA TGGGTATGCATGCTACTTTCTCTGTTTTTACCTTTGAGAGTTACATGCATTACCAAAAAAACATGATGTCCTAATTTAAT CTGTCACTGTTTTCAGCAACCGCAAGGTCCGAGGTGCCCTCAATTTTGATGATGCGGATGTGGGTTTGGTTAGTGACTCT ATGGTTGCAAACAGCCTCTATCAGCAGAATGGTAGCTCTGGATCATCTTCAGGTGCACCATTGAAGTCTGAACTACTAGA CTCTTGA
CDS sequence (LotjaGi3g1v0315700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATCTGTTTGGAAAAACCAAGCATATTCTACTGACAAATGTTTCATCAATGGGGAATGGAACGTCTGAAGATGCAGA GCGGTACTGGTTTGCTTTTATTTTATACTCAGTCAAGAGATTGACTCAGAATAGTGAGGAGAGTGGGCAGGAAGAGGTTG AGAACACTGGGCTGACCTTGTGTCGTATATTGAGAGCAGCGAATCTTAACATTGCAGATTTTTCTAAAGAGCTTTCTCAG TTTGTTGTCAAGGCTGGTCAAATTTTAAGTAATCTATATGGCACGGATTGGGAAAATAGGCTTAAGGCAAAGGAGATGCA TGCCAATGCTACTCAGTTGGAGATCCTTAGCAAGTACTATAAACGTATATTTGGAGAATTTTTTGTTGCACCTGATGCAA ATGTCGAAAAGAACTCAATTGTTACTGTTCATGCATCTGATTACCATCGGTTTGGATGGTTACTTTTCTTGGCACTCCGT GCACATGCTTTCAGCCGTTTCATAAACTTGGTGACTTGCACCAATGGTTTAATTTCAATATTGGCTATCTTAATTATTCA TGTCCCTGCTCGTTTTCGGAATTTCAACATTAACGACTCTTCACGCTTTGTTAAGAAAAGTAGCAAAGGTGTTGACCTCC TCGCTTCACTTTGCAAAATATATAACACTTCAGAAGATGAGTTGAGGAAGACCATGGAGATAGCCAATAGTTTAATAGCA GATATATTGAAGAAGAAACCTTGTTTGGCATCTGAATGCGAAACTGAAAACCTAGAGAATTTTGATAGAGATAGCTTGAC CTATTTTAAAGATCTGATGGAGGAATTGTCTCTGCCATCTAGTTTAAACATCTTAGAAAAAGACTATGATGTCATGATTC ATGACAAGGGTGAACTGGATGAGAGGCTATTCATTAATGAGGATGACAGCCTGCTAGCTTCAGGAACCTTGTCTGGTAGT TCAGTTTCAGCCAGTGGTCTAAAGAGGAAATTTGATTCGATAGCATCGCCTGCTAAGACTGTTATGAGTCCACTCTCACC CCACCGCTCTCCTGCGTCCAGTGCTAATGGCATTCCAGGTAGCACAAATTCAAAGATGGCAGCCGCCACCCCTGTAAGCA CCGCAATGACAACTGCAAAGTGGCTTCGGACTGTCATTTCTCCACTTGCACCGAAGCCCTCACAAGAGCTAGAGCGATTC TTGGCATCATGTGACAGGGACATTACTAGTGATGTGGTGCGCAGAACTCTGATTATATTGCAGGCTATTTTTCCTAGTAG TCCTCTTGGGGAACGATGTGTAACTGGAGGCCTGCAAAGTGCAAATCTCATGGACAATATATGGGCCGAACAGCGAAGAT TGGAAGCACTAAAGTTATACTATAGGGTATTGGAGGCAATGTGCAGAGCAGAAGCCCAAACACTTCATGCAACTAATTTA ACTTCTCTACTTACTAATGAGAGGTTTCATAGGTGTATGCTCGCATGTTCTGCAGAATTGGTCCTGGCAACTCACAAGAC TGTAACAATGTTGTTCCCTGCAGTACTGGAGAGGACTGGGATTACAGCTTTTGATCTGAGCAAGGTGATTGAAAGTTTCA TTAGACATGAAGAATCCCTCCCCAGAGAATTGAGGCGACATCTGAATTCATTGGAAGAACGACTGTTGGAGAGCATGGTA TGGGAAAAGGGTTCCTCAATGTATAATTCTTTGGCAGTTGCTAGACCTGCCCTTTCTGCAGAAATCAATCGTCTTGGACT GTTAGCTGAACCAATGCCATCACTGGATGAGATTGCAATAAATATTAACTTTTCTTATGGAGGGCTGCCTCCTGTTCCTA CCTTGCCTAAATTTGAGACTTCACCAATTCAAAATGGGGATACCAGATCACCAAAGCGTCTCTGTACAGAACATCGAAAT GTGTTAGTGGAACGTAATTCTTTCGCTTCACCAGTAAAAGATCGGCTTCTTCCCTTCAGCAACCTTAAGTCAAAGCTACC ACCTCCACCTCCTTTGCAGTCAGCATTTGCCAGTCCAACAAAACCAAATCCAGGAGGTGGAGGGGAAACATGTGCAGAAA CTGGGATCAACATCTTTTTTGGCAAGATTATTAAGTTGGGAGCAGTCAGAATAAGTGGCATGGTTGAAAGGCTACAATTG TCCCAGCAGATAAGGGAGAATGTATACTGTCTTTTCCAGCGGATCCTAAATCAATGGACATCTCTTTTCTTCAACCGCCA TATTGATCAAATCATTTTGTGTTGCTTCTACGGAGTTGCAAAGATTTCACAACTGAGCCTAACCTTTAGGGAGATTATAT ACAACTACAGAAAGCAACCTCATTGCAAACCCCAAGTTTTTCGCAGTGTATTTGTTGATTGGTCATCGGCACGCCGTAAT GGAGCATGTAAACAGAGAATAGGACAGGATCATGTCGACATCATTTCATTTTACAATGAAGTTTTCATTCCATCTGTAAA GCCACTGCTGGTTGAACTTGGCCCTGGTGGAGCAACCATGAAAAGTGACCGAAAGCCTGAAGTTAATAAAAATGACGCTC ACTGTCCCGGGTCTCCTAAAATATCACCTTTTCCAAGCCTCCCGGATATGTCCCCCAAAAAAGTGTCTGCCTCACACAAT GTTTATGTCTCTCCGTTACGATCGTCTAAGATGGATGCTCTAATATCACATAGCTCAAAAAGCTATTATGCATGTGTTGG GGAGAGCACTCATGCATATCAGAGCCCTTCAAAAGACCTGACCGCAATCAATAACCGTTTGAATGGCAACCGCAAGGTCC GAGGTGCCCTCAATTTTGATGATGCGGATGTGGGTTTGGTTAGTGACTCTATGGTTGCAAACAGCCTCTATCAGCAGAAT GGTAGCTCTGGATCATCTTCAGGTGCACCATTGAAGTCTGAACTACTAGACTCTTGA
Protein sequence (LotjaGi3g1v0315700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNLFGKTKHILLTNVSSMGNGTSEDAERYWFAFILYSVKRLTQNSEESGQEEVENTGLTLCRILRAANLNIADFSKELSQ FVVKAGQILSNLYGTDWENRLKAKEMHANATQLEILSKYYKRIFGEFFVAPDANVEKNSIVTVHASDYHRFGWLLFLALR AHAFSRFINLVTCTNGLISILAILIIHVPARFRNFNINDSSRFVKKSSKGVDLLASLCKIYNTSEDELRKTMEIANSLIA DILKKKPCLASECETENLENFDRDSLTYFKDLMEELSLPSSLNILEKDYDVMIHDKGELDERLFINEDDSLLASGTLSGS SVSASGLKRKFDSIASPAKTVMSPLSPHRSPASSANGIPGSTNSKMAAATPVSTAMTTAKWLRTVISPLAPKPSQELERF LASCDRDITSDVVRRTLIILQAIFPSSPLGERCVTGGLQSANLMDNIWAEQRRLEALKLYYRVLEAMCRAEAQTLHATNL TSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLESMV WEKGSSMYNSLAVARPALSAEINRLGLLAEPMPSLDEIAININFSYGGLPPVPTLPKFETSPIQNGDTRSPKRLCTEHRN VLVERNSFASPVKDRLLPFSNLKSKLPPPPPLQSAFASPTKPNPGGGGETCAETGINIFFGKIIKLGAVRISGMVERLQL SQQIRENVYCLFQRILNQWTSLFFNRHIDQIILCCFYGVAKISQLSLTFREIIYNYRKQPHCKPQVFRSVFVDWSSARRN GACKQRIGQDHVDIISFYNEVFIPSVKPLLVELGPGGATMKSDRKPEVNKNDAHCPGSPKISPFPSLPDMSPKKVSASHN VYVSPLRSSKMDALISHSSKSYYACVGESTHAYQSPSKDLTAINNRLNGNRKVRGALNFDDADVGLVSDSMVANSLYQQN GSSGSSSGAPLKSELLDS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 966 | 966 | 0.0 | ||
| PANTHER | 1 | 966 | 966 | 0.0 | ||
| Phobius | 1 | 166 | 166 | - | – | |
| SMART | 41 | 187 | 147 | 3.4E-39 | ||
| Pfam | 51 | 187 | 137 | 2.6E-30 | ||
| TMHMM | 167 | 189 | 23 | - | – | |
| Phobius | 167 | 188 | 22 | - | – | |
| Phobius | 189 | 978 | 790 | - | – | |
| MobiDBLite | 341 | 365 | 25 | - | – | |
| MobiDBLite | 346 | 365 | 20 | - | – | |
| Gene3D | 368 | 589 | 222 | 1.3E-58 | – | |
| SMART | 370 | 571 | 202 | 3.1E-90 | ||
| Pfam | 370 | 571 | 202 | 4.4E-63 | ||
| SUPERFAMILY | 378 | 573 | 196 | 7.65E-60 | ||
| MobiDBLite | 665 | 688 | 24 | - | – | |
| Gene3D | 669 | 854 | 186 | 1.2E-45 | – | |
| SUPERFAMILY | 694 | 866 | 173 | 9.07E-45 | ||
| Pfam | 696 | 827 | 132 | 4.9E-40 | ||
| MobiDBLite | 840 | 865 | 26 | - | – | |
| MobiDBLite | 958 | 972 | 15 | - | – | |
| MobiDBLite | 958 | 978 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | G1/S transition of mitotic cell cycle | The mitotic cell cycle transition by which a cell in G1 commits to S phase. The process begins with the build up of G1 cyclin-dependent kinase (G1 CDK), resulting in the activation of transcription of G1 cyclins. The process ends with the positive feedback of the G1 cyclins on the G1 CDK which commits the cell to S phase, in which DNA replication is initiated. | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Transcription, DNA-templated | The cellular synthesis of RNA on a template of DNA. | ||
| Biological process | Regulation of transcription by RNA polymerase II | Any process that modulates the frequency, rate or extent of transcription mediated by RNA polymerase II. | ||
| Biological process | Regulation of cell cycle | Any process that modulates the rate or extent of progression through the cell cycle. |
Expression pattern of LotjaGi3g1v0315700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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