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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0315700 |
| Transcript ID | LotjaGi3g1v0315700.3 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Retinoblastoma-related protein; TAIR: AT3G12280.2 retinoblastoma-related 1; Swiss-Prot: sp|Q9SLZ4|RBR1_PEA Retinoblastoma-related protein 1; TrEMBL-Plants: tr|I1MIM1|I1MIM1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0315700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:66864252..66869676) extracted from Lotus japonicus Gifu genome v1.2.
GCACTTTCAATGTATAATTTGTGTTCCGCACGTATCAATGCGGTGTGTAATTGATTCCCGCACATATAAGTGCGGTAAAA TTGGGTGGCGAGAAAACGAATAGGGTTGGCATTAAAATCAATTCCCAAATCCATATCAGGTTGAGATTTGGTTAAGAAGT AGACTCAGAACAGGGGAAATGTCCATATATTTATTTCTGCTTGCTTGTAGACAGATTGTTTGAGGTTTAAATTGTGATTC TTTACCCATTTAAGTCTACATTGATGTGCTCTTTAATCACAGAATGGGCTGGCTTTGGATGAGAAAAGCTGTAAAGAAGC AATGAATCTGTTTGGAAAAACCAAGCATATTCTACTGACAAATGTTTCATCAATGGGGAATGGAACGGTACATAAGTTCA TTTTTATTTAAGTGCAAAATATAAATTGTATTGAAGTTTTTTATTTGAATTGATGAGGTTGTATAATTCTTTTCCAGTCT GAAGATGCAGAGCGGTACTGGTTTGCTTTTATTTTATACTCAGTCAAGAGATTGACTCAGAATAGTGAGGAGAGTGGGCA GGAAGAGGTTGAGAACACTGGGCTGACCTTGTGTCGTATATTGAGAGCAGCGAATCTTAAGTATTTTACTGACTTTTCTT TCTAGCATCTATGATTGAAGTTTACTGGCTTTTTTCCCTACTATATAAGTTTGTAGATTGTCATATAAGTATATTACTTA TTGTTATCATTTATCGTGTATTCAACAGCATTGCAGATTTTTCTAAAGAGCTTTCTCAGTTTGTTGTCAAGGCTGGTCAA ATTTTAAGTAATCTATATGGCACGGATTGGGAAAATAGGCTTAAGGTATGACTAAGCAGGGAGTCATGATTACATTTTGC ATAGTTTATGTTCATATGTGTGTATCAGCATGTGTGTGATGGTCTCTGTATTTTGTATTCCTTGGAAGCCTTTTTTTTAT AAAGCCATTATTTATTTTTCTATGTCTATACCAGGCAAAGGAGATGCATGCCAATGCTACTCAGTTGGAGATCCTTAGCA AGTGAGTGGCCATTGTCTGCATCCACTTCTTAAATTAATGTCTTATGTGGCAATTAGTGCAACATGCGGACATTGCCATA TGAGTTTACTTGACATGACATCTTATAACTTTGATGGTTCCAGGTACTATAAACGTATATTTGGAGAATTTTTTGTTGCA CCTGATGCAAATGTCGAAAAGAACTCAATTGTTACTGTTCATGCATCTGATTACCATCGGTTTGGATGGTTACTTTTCTT GGCACTCCGTGCACATGCTTTCAGCCGTTTCATAAACTTGGTGACTTGCACCAATGGTTTAATTTCAATATTGGTAAGTT AGATTCTTGTAGCTTTAGTCTTTTTCAGCATTGGGTTTTCCCTGAATATGTTTCATATCTTTTTCTTTTTCACATAGAAA TAGAATAGACTAAAGAGAATTGTTAGAATTTCAAACACTTGAATTTTTAATAAAATAATTGTTTGGTAACTCTTTTTGTT GTTGGGGGAACAAAGGAAACAATTTCTTACTTGCTGGGTGCATCTATTACAGGCTATCTTAATTATTCATGTCCCTGCTC GTTTTCGGAATTTCAACATTAACGACTCTTCACGCTTTGGTAATTGTCGTTGTTCTCCTTTCTTCCCTGCATTTTGTTTA GTTATTCTTGCTCTTTTTCATGGAGGCCTGCTCTATGCTCACACACTCATTTACTTGAAGGCTATTTTGGTGGTGGGCTA AAAGTGGCTTCTTCTAATTCTATCAACATTTCTTGCAGTTAAGAAAAGTAGCAAAGGTGTTGACCTCCTCGCTTCACTTT GCAAAATATATAACACTTCAGAAGATGAGTTGAGGAAGACCATGGAGATAGCCAATAGTTTAATAGCAGATATATTGAAG AAGAAACCTTGTTTGGCATCTGAATGCGAAACTGAAAACCTAGAGAATTTTGATAGAGGTTCACTCGCCTTCTGTCATTG GTTATTCATGCATCATTAATATATAATATCTTAAACTGGTGTTTATTATCCCTCTTTGCAGATAGCTTGACCTATTTTAA AGATCTGATGGAGGAATTGTCTCTGCCATCTAGTTTAAACATCTTAGAAAAAGACTATGATGTCATGATTCATGACAAGG GTGAACTGGATGAGAGGCTATTCATTAATGAGGATGACAGCCTGCTAGCTTCAGGAACCTTGTCTGGTAGTTCAGTTTCA GCCAGTGGTCTAAAGGTATCTTTAATGCAAAATTTGTTCTAACATGTAGTTTTATCTTGGATAAGACTAATACCTAAAAT TACCTACCTTTGCACTCTGTAGAGGAAATTTGATTCGATAGCATCGCCTGCTAAGACTGTTATGAGTCCACTCTCACCCC ACCGCTCTCCTGCGTCCAGTGCTAATGGCATTCCAGGTAGCACAAATTCAAAGATGGCAGCCGCCACCCCTGTAAGCACC GCAATGACAACTGCAAAGTGGCTTCGGACTGTCATTTCTCCACTTGCACCGAAGCCCTCACAAGAGCTAGAGCGATTCTT GGCATCATGTGACAGGGACATTACTAGTGATGTGGTGCGCAGAACTCTGATTATATTGCAGGCTATTTTTCCTAGTAGTC CTCTTGGGGAACGATGTGTAACTGGAGGCCTGCAAAGTGCAAATCTCATGGACAATATATGGGCCGAACAGCGAAGATTG GAAGCACTAAAGTTATACTATAGGGTATTGGAGGCAATGTGCAGAGCAGAAGCCCAAACACTTCATGCAACTAATTTAAC TTCTCTACTTACTAATGAGAGGTTTCATAGGTGTATGCTCGCATGTTCTGCAGAATTGGTCCTGGCAACTCACAAGACTG TAACAATGTTGTTCCCTGCAGTACTGGAGAGGACTGGGATTACAGCTTTTGATCTGAGCAAGGTGATTGAAAGTTTCATT AGACATGAAGAATCCCTCCCCAGAGAATTGAGGCGACATCTGAATTCATTGGAAGAACGACTGTTGGAGAGCATGGTATG GGAAAAGGGTTCCTCAATGTATAATTCTTTGGCAGTTGCTAGACCTGCCCTTTCTGCAGAAATCAATCGTCTTGGACTGT TAGCTGAACCAATGCCATCACTGGATGAGATTGCAATAAATATTAACTTTTCTTATGGAGGGCTGCCTCCTGTTCCTACC TTGCCTAAATTTGAGACTTCACCAAGTAATGGCTCTCTGTCTCTCAGTTTGAAGATTTTAAGTCACATTTTTCTCTCTTC ATATAATTCTTAGTTCATCATTGCATAAAGTTGTTGCCATGGATATCTATTAAGATCTATAAATTTGTTCCTTCTCCATT CTCCCTTCACACCTTTTCTTTCTCAAAGAGCACATGTTCAAAAATACATATTTTTTCAATTTCATTAACATGTCTATCAT TGAAATGATTTCAGTTCAAAATGGGGATACCAGATCACCAAAGCGTCTCTGTACAGAACATCGAAATGTGTTAGTGGAAC GTAATTCTTTCGCTTCACCAGTAAAAGATCGGCTTCTTCCCTTCAGCAACCTTAAGTCAAAGCTACCACCTCCACCTCCT TTGCAGTCAGCATTTGCCAGGTATAACTTTGATGAGTCTGGAAGTAGCTATCTTTGTAATTTTTCATTATTTTGACTTTT CACCACTTTGCTGTTGCCCTCTTTTGATGCTTTGTTGAATGTTTATTTCCGATAGTCCAACAAAACCAAATCCAGGAGGT GGAGGGGAAACATGTGCAGAAACTGGGATCAACATCTTTTTTGGCAAGGTATTTGGACTTTCATCATACTCTTATAACCT TGATTGTTAAAAGGACTTGTGAGCTATATGTTACACAGTTTTGTCATTAAAAGTTCATTTCATAACTAATTTTTTTAATT TAGTGGGCCCATAAGTTGCCTCTTGGAATTGGATTATTACATTACATCACGTCCACTTGAGTTATTACATCCTTGTTCTG ATTCATGTGCTCGTTTAAGATTTAATGATTTGTTGCTTCTCTGGTTCATTTTAAGCACTAAAACTTGTGTACACTTCCTT TGTTTCCTAGATTATTAAGTTGGGAGCAGTCAGAATAAGTGGCATGGTTGAAAGGCTACAATTGTCCCAGCAGATAAGGG AGAATGTATACTGTCTTTTCCAGCGGATCCTAAATCAATGGACATCTCTTTTCTTCAACCGCCATATTGATCAAATCATT TTGTGTTGCTTCTACGGAGTTGCAAAGGTTTCTCTTGAGGCTTAGAAACTTGATATTGCCATGTGTGTTTCTTCGATTAT CTTTCTTCATTCCATACTCTTTTGCAGATTTCACAACTGAGCCTAACCTTTAGGGAGATTATATACAACTACAGAAAGCA ACCTCATTGCAAACCCCAAGTTTTTCGCAGTGTATTTGTTGATTGGTCATCGGCACGCCGTAATGGAGCATGTAAACAGA GAATAGGACAGGATCATGTCGACATCATTTCATTTTACAATGAAGTTTTCATTCCATCTGTAAAGCCACTGCTGGTTGAA CTTGGCCCTGGTGGAGCAACCATGAAAAGTGACCGAAAGCCTGAAGTTAATAAAAATGACGGTACTTGCTTATTAGCTAA ACTGAAAGTAATTATATTCATGACTTCTATTGCTATGCTAGTTCCGCACTCCATTATTGGCTTGTATGCTTTTCTCTTTC CAGCTCACTGTCCCGGGTCTCCTAAAATATCACCTTTTCCAAGCCTCCCGGATATGTCCCCCAAAAAAGTGTCTGCCTCA CACAATGTTTATGTCTCTCCGTTACGATCGTCTAAGGTACATATTTATTTGCCTGGCTTTCTTCTTTGGACTATCTGACA TTGTACTGTAGAAGGAAGGAGCATGTGAGGACTGTAATTGTTGTGCAATAGTGCTGTTACTAACATGATGCGGTTATAAC TTGTCCTCAGGCTCACTACATAACACTTAAGCATATAGTTGAAATGGAAAATTTTGTTTTATTTTATGTAATATAAGTGC ATTCATTGTTTATGTGCACACACAGATGGATGCTCTAATATCACATAGCTCAAAAAGCTATTATGCATGTGTTGGGGAGA GCACTCATGCATATCAGAGCCCTTCAAAAGACCTGACCGCAATCAATAACCGTTTGAATGGGTATGCATGCTACTTTCTC TGTTTTTACCTTTGAGAGTTACATGCATTACCAAAAAAACATGATGTCCTAATTTAATCTGTCACTGTTTTCAGCAACCG CAAGGTCCGAGGTGCCCTCAATTTTGATGATGCGGATGTGGGTTTGGTTAGTGACTCTATGGTTGCAAACAGCCTCTATC AGCAGAATGGTAGCTCTGGATCATCTTCAGGTGCACCATTGAAGTCTGAACTACTAGACTCTTGA
CDS sequence (LotjaGi3g1v0315700.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTATAATTTGTGTTCCAATGGGCTGGCTTTGGATGAGAAAAGCTGTAAAGAAGCAATGAATCTGTTTGGAAAAACCAA GCATATTCTACTGACAAATGTTTCATCAATGGGGAATGGAACGTCTGAAGATGCAGAGCGGTACTGGTTTGCTTTTATTT TATACTCAGTCAAGAGATTGACTCAGAATAGTGAGGAGAGTGGGCAGGAAGAGGTTGAGAACACTGGGCTGACCTTGTGT CGTATATTGAGAGCAGCGAATCTTAACATTGCAGATTTTTCTAAAGAGCTTTCTCAGTTTGTTGTCAAGGCTGGTCAAAT TTTAAGTAATCTATATGGCACGGATTGGGAAAATAGGCTTAAGGCAAAGGAGATGCATGCCAATGCTACTCAGTTGGAGA TCCTTAGCAAGTACTATAAACGTATATTTGGAGAATTTTTTGTTGCACCTGATGCAAATGTCGAAAAGAACTCAATTGTT ACTGTTCATGCATCTGATTACCATCGGTTTGGATGGTTACTTTTCTTGGCACTCCGTGCACATGCTTTCAGCCGTTTCAT AAACTTGGTGACTTGCACCAATGGTTTAATTTCAATATTGGCTATCTTAATTATTCATGTCCCTGCTCGTTTTCGGAATT TCAACATTAACGACTCTTCACGCTTTGTTAAGAAAAGTAGCAAAGGTGTTGACCTCCTCGCTTCACTTTGCAAAATATAT AACACTTCAGAAGATGAGTTGAGGAAGACCATGGAGATAGCCAATAGTTTAATAGCAGATATATTGAAGAAGAAACCTTG TTTGGCATCTGAATGCGAAACTGAAAACCTAGAGAATTTTGATAGAGATAGCTTGACCTATTTTAAAGATCTGATGGAGG AATTGTCTCTGCCATCTAGTTTAAACATCTTAGAAAAAGACTATGATGTCATGATTCATGACAAGGGTGAACTGGATGAG AGGCTATTCATTAATGAGGATGACAGCCTGCTAGCTTCAGGAACCTTGTCTGGTAGTTCAGTTTCAGCCAGTGGTCTAAA GAGGAAATTTGATTCGATAGCATCGCCTGCTAAGACTGTTATGAGTCCACTCTCACCCCACCGCTCTCCTGCGTCCAGTG CTAATGGCATTCCAGGTAGCACAAATTCAAAGATGGCAGCCGCCACCCCTGTAAGCACCGCAATGACAACTGCAAAGTGG CTTCGGACTGTCATTTCTCCACTTGCACCGAAGCCCTCACAAGAGCTAGAGCGATTCTTGGCATCATGTGACAGGGACAT TACTAGTGATGTGGTGCGCAGAACTCTGATTATATTGCAGGCTATTTTTCCTAGTAGTCCTCTTGGGGAACGATGTGTAA CTGGAGGCCTGCAAAGTGCAAATCTCATGGACAATATATGGGCCGAACAGCGAAGATTGGAAGCACTAAAGTTATACTAT AGGGTATTGGAGGCAATGTGCAGAGCAGAAGCCCAAACACTTCATGCAACTAATTTAACTTCTCTACTTACTAATGAGAG GTTTCATAGGTGTATGCTCGCATGTTCTGCAGAATTGGTCCTGGCAACTCACAAGACTGTAACAATGTTGTTCCCTGCAG TACTGGAGAGGACTGGGATTACAGCTTTTGATCTGAGCAAGGTGATTGAAAGTTTCATTAGACATGAAGAATCCCTCCCC AGAGAATTGAGGCGACATCTGAATTCATTGGAAGAACGACTGTTGGAGAGCATGGTATGGGAAAAGGGTTCCTCAATGTA TAATTCTTTGGCAGTTGCTAGACCTGCCCTTTCTGCAGAAATCAATCGTCTTGGACTGTTAGCTGAACCAATGCCATCAC TGGATGAGATTGCAATAAATATTAACTTTTCTTATGGAGGGCTGCCTCCTGTTCCTACCTTGCCTAAATTTGAGACTTCA CCAATTCAAAATGGGGATACCAGATCACCAAAGCGTCTCTGTACAGAACATCGAAATGTGTTAGTGGAACGTAATTCTTT CGCTTCACCAGTAAAAGATCGGCTTCTTCCCTTCAGCAACCTTAAGTCAAAGCTACCACCTCCACCTCCTTTGCAGTCAG CATTTGCCAGTCCAACAAAACCAAATCCAGGAGGTGGAGGGGAAACATGTGCAGAAACTGGGATCAACATCTTTTTTGGC AAGATTATTAAGTTGGGAGCAGTCAGAATAAGTGGCATGGTTGAAAGGCTACAATTGTCCCAGCAGATAAGGGAGAATGT ATACTGTCTTTTCCAGCGGATCCTAAATCAATGGACATCTCTTTTCTTCAACCGCCATATTGATCAAATCATTTTGTGTT GCTTCTACGGAGTTGCAAAGATTTCACAACTGAGCCTAACCTTTAGGGAGATTATATACAACTACAGAAAGCAACCTCAT TGCAAACCCCAAGTTTTTCGCAGTGTATTTGTTGATTGGTCATCGGCACGCCGTAATGGAGCATGTAAACAGAGAATAGG ACAGGATCATGTCGACATCATTTCATTTTACAATGAAGTTTTCATTCCATCTGTAAAGCCACTGCTGGTTGAACTTGGCC CTGGTGGAGCAACCATGAAAAGTGACCGAAAGCCTGAAGTTAATAAAAATGACGGTACTTCTCACTGTCCCGGGTCTCCT AAAATATCACCTTTTCCAAGCCTCCCGGATATGTCCCCCAAAAAAGTGTCTGCCTCACACAATGTTTATGTCTCTCCGTT ACGATCGTCTAAGATGGATGCTCTAATATCACATAGCTCAAAAAGCTATTATGCATGTGTTGGGGAGAGCACTCATGCAT ATCAGAGCCCTTCAAAAGACCTGACCGCAATCAATAACCGTTTGAATGGCAACCGCAAGGTCCGAGGTGCCCTCAATTTT GATGATGCGGATGTGGGTTTGGTTAGTGACTCTATGGTTGCAAACAGCCTCTATCAGCAGAATGGTAGCTCTGGATCATC TTCAGGTGCACCATTGAAGTCTGAACTACTAGACTCTTGA
Protein sequence (LotjaGi3g1v0315700.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MYNLCSNGLALDEKSCKEAMNLFGKTKHILLTNVSSMGNGTSEDAERYWFAFILYSVKRLTQNSEESGQEEVENTGLTLC RILRAANLNIADFSKELSQFVVKAGQILSNLYGTDWENRLKAKEMHANATQLEILSKYYKRIFGEFFVAPDANVEKNSIV TVHASDYHRFGWLLFLALRAHAFSRFINLVTCTNGLISILAILIIHVPARFRNFNINDSSRFVKKSSKGVDLLASLCKIY NTSEDELRKTMEIANSLIADILKKKPCLASECETENLENFDRDSLTYFKDLMEELSLPSSLNILEKDYDVMIHDKGELDE RLFINEDDSLLASGTLSGSSVSASGLKRKFDSIASPAKTVMSPLSPHRSPASSANGIPGSTNSKMAAATPVSTAMTTAKW LRTVISPLAPKPSQELERFLASCDRDITSDVVRRTLIILQAIFPSSPLGERCVTGGLQSANLMDNIWAEQRRLEALKLYY RVLEAMCRAEAQTLHATNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEESLP RELRRHLNSLEERLLESMVWEKGSSMYNSLAVARPALSAEINRLGLLAEPMPSLDEIAININFSYGGLPPVPTLPKFETS PIQNGDTRSPKRLCTEHRNVLVERNSFASPVKDRLLPFSNLKSKLPPPPPLQSAFASPTKPNPGGGGETCAETGINIFFG KIIKLGAVRISGMVERLQLSQQIRENVYCLFQRILNQWTSLFFNRHIDQIILCCFYGVAKISQLSLTFREIIYNYRKQPH CKPQVFRSVFVDWSSARRNGACKQRIGQDHVDIISFYNEVFIPSVKPLLVELGPGGATMKSDRKPEVNKNDGTSHCPGSP KISPFPSLPDMSPKKVSASHNVYVSPLRSSKMDALISHSSKSYYACVGESTHAYQSPSKDLTAINNRLNGNRKVRGALNF DDADVGLVSDSMVANSLYQQNGSSGSSSGAPLKSELLDS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 185 | 185 | - | – | |
| PANTHER | 4 | 987 | 984 | 0.0 | ||
| PANTHER | 4 | 987 | 984 | 0.0 | ||
| SMART | 60 | 206 | 147 | 3.4E-39 | ||
| Pfam | 70 | 206 | 137 | 2.7E-30 | ||
| TMHMM | 186 | 208 | 23 | - | – | |
| Phobius | 186 | 207 | 22 | - | – | |
| Phobius | 208 | 999 | 792 | - | – | |
| MobiDBLite | 360 | 384 | 25 | - | – | |
| MobiDBLite | 365 | 384 | 20 | - | – | |
| Gene3D | 387 | 608 | 222 | 1.4E-58 | – | |
| Pfam | 389 | 590 | 202 | 4.6E-63 | ||
| SMART | 389 | 590 | 202 | 3.1E-90 | ||
| SUPERFAMILY | 397 | 592 | 196 | 7.82E-60 | ||
| MobiDBLite | 684 | 707 | 24 | - | – | |
| Gene3D | 688 | 870 | 183 | 1.3E-45 | – | |
| SUPERFAMILY | 713 | 887 | 175 | 1.25E-44 | ||
| Pfam | 715 | 846 | 132 | 5.1E-40 | ||
| MobiDBLite | 859 | 891 | 33 | - | – | |
| MobiDBLite | 979 | 999 | 21 | - | – | |
| MobiDBLite | 979 | 993 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | G1/S transition of mitotic cell cycle | The mitotic cell cycle transition by which a cell in G1 commits to S phase. The process begins with the build up of G1 cyclin-dependent kinase (G1 CDK), resulting in the activation of transcription of G1 cyclins. The process ends with the positive feedback of the G1 cyclins on the G1 CDK which commits the cell to S phase, in which DNA replication is initiated. | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Transcription, DNA-templated | The cellular synthesis of RNA on a template of DNA. | ||
| Biological process | Regulation of transcription by RNA polymerase II | Any process that modulates the frequency, rate or extent of transcription mediated by RNA polymerase II. | ||
| Biological process | Regulation of cell cycle | Any process that modulates the rate or extent of progression through the cell cycle. |
Expression pattern of LotjaGi3g1v0315700.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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