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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0315700 |
| Transcript ID | LotjaGi3g1v0315700.4 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Retinoblastoma-related protein; TAIR: AT3G12280.2 retinoblastoma-related 1; Swiss-Prot: sp|Q9SLZ4|RBR1_PEA Retinoblastoma-related protein 1; TrEMBL-Plants: tr|I1MIM1|I1MIM1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0315700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:66864690..66869676) extracted from Lotus japonicus Gifu genome v1.2.
TTTTATTTGAATTGATGAGGTTGTATAATTCTTTTCCAGTCTGAAGATGCAGAGCGGTACTGGTTTGCTTTTATTTTATA CTCAGTCAAGAGATTGACTCAGAATAGTGAGGAGAGTGGGCAGGAAGAGGTTGAGAACACTGGGCTGACCTTGTGTCGTA TATTGAGAGCAGCGAATCTTAAGTATTTTACTGACTTTTCTTTCTAGCATCTATGATTGAAGTTTACTGGCTTTTTTCCC TACTATATAAGTTTGTAGATTGTCATATAAGTATATTACTTATTGTTATCATTTATCGTGTATTCAACAGCATTGCAGAT TTTTCTAAAGAGCTTTCTCAGTTTGTTGTCAAGGCTGGTCAAATTTTAAGTAATCTATATGGCACGGATTGGGAAAATAG GCTTAAGGTATGACTAAGCAGGGAGTCATGATTACATTTTGCATAGTTTATGTTCATATGTGTGTATCAGCATGTGTGTG ATGGTCTCTGTATTTTGTATTCCTTGGAAGCCTTTTTTTTATAAAGCCATTATTTATTTTTCTATGTCTATACCAGGCAA AGGAGATGCATGCCAATGCTACTCAGTTGGAGATCCTTAGCAAGTGAGTGGCCATTGTCTGCATCCACTTCTTAAATTAA TGTCTTATGTGGCAATTAGTGCAACATGCGGACATTGCCATATGAGTTTACTTGACATGACATCTTATAACTTTGATGGT TCCAGGTACTATAAACGTATATTTGGAGAATTTTTTGTTGCACCTGATGCAAATGTCGAAAAGAACTCAATTGTTACTGT TCATGCATCTGATTACCATCGGTTTGGATGGTTACTTTTCTTGGCACTCCGTGCACATGCTTTCAGCCGTTTCATAAACT TGGTGACTTGCACCAATGGTTTAATTTCAATATTGGTAAGTTAGATTCTTGTAGCTTTAGTCTTTTTCAGCATTGGGTTT TCCCTGAATATGTTTCATATCTTTTTCTTTTTCACATAGAAATAGAATAGACTAAAGAGAATTGTTAGAATTTCAAACAC TTGAATTTTTAATAAAATAATTGTTTGGTAACTCTTTTTGTTGTTGGGGGAACAAAGGAAACAATTTCTTACTTGCTGGG TGCATCTATTACAGGCTATCTTAATTATTCATGTCCCTGCTCGTTTTCGGAATTTCAACATTAACGACTCTTCACGCTTT GGTAATTGTCGTTGTTCTCCTTTCTTCCCTGCATTTTGTTTAGTTATTCTTGCTCTTTTTCATGGAGGCCTGCTCTATGC TCACACACTCATTTACTTGAAGGCTATTTTGGTGGTGGGCTAAAAGTGGCTTCTTCTAATTCTATCAACATTTCTTGCAG TTAAGAAAAGTAGCAAAGGTGTTGACCTCCTCGCTTCACTTTGCAAAATATATAACACTTCAGAAGATGAGTTGAGGAAG ACCATGGAGATAGCCAATAGTTTAATAGCAGATATATTGAAGAAGAAACCTTGTTTGGCATCTGAATGCGAAACTGAAAA CCTAGAGAATTTTGATAGAGGTTCACTCGCCTTCTGTCATTGGTTATTCATGCATCATTAATATATAATATCTTAAACTG GTGTTTATTATCCCTCTTTGCAGATAGCTTGACCTATTTTAAAGATCTGATGGAGGAATTGTCTCTGCCATCTAGTTTAA ACATCTTAGAAAAAGACTATGATGTCATGATTCATGACAAGGGTGAACTGGATGAGAGGCTATTCATTAATGAGGATGAC AGCCTGCTAGCTTCAGGAACCTTGTCTGGTAGTTCAGTTTCAGCCAGTGGTCTAAAGGTATCTTTAATGCAAAATTTGTT CTAACATGTAGTTTTATCTTGGATAAGACTAATACCTAAAATTACCTACCTTTGCACTCTGTAGAGGAAATTTGATTCGA TAGCATCGCCTGCTAAGACTGTTATGAGTCCACTCTCACCCCACCGCTCTCCTGCGTCCAGTGCTAATGGCATTCCAGGT AGCACAAATTCAAAGATGGCAGCCGCCACCCCTGTAAGCACCGCAATGACAACTGCAAAGTGGCTTCGGACTGTCATTTC TCCACTTGCACCGAAGCCCTCACAAGAGCTAGAGCGATTCTTGGCATCATGTGACAGGGACATTACTAGTGATGTGGTGC GCAGAACTCTGATTATATTGCAGGCTATTTTTCCTAGTAGTCCTCTTGGGGAACGATGTGTAACTGGAGGCCTGCAAAGT GCAAATCTCATGGACAATATATGGGCCGAACAGCGAAGATTGGAAGCACTAAAGTTATACTATAGGGTATTGGAGGCAAT GTGCAGAGCAGAAGCCCAAACACTTCATGCAACTAATTTAACTTCTCTACTTACTAATGAGAGGTTTCATAGGTGTATGC TCGCATGTTCTGCAGAATTGGTCCTGGCAACTCACAAGACTGTAACAATGTTGTTCCCTGCAGTACTGGAGAGGACTGGG ATTACAGCTTTTGATCTGAGCAAGGTGATTGAAAGTTTCATTAGACATGAAGAATCCCTCCCCAGAGAATTGAGGCGACA TCTGAATTCATTGGAAGAACGACTGTTGGAGAGCATGGTATGGGAAAAGGGTTCCTCAATGTATAATTCTTTGGCAGTTG CTAGACCTGCCCTTTCTGCAGAAATCAATCGTCTTGGACTGTTAGCTGAACCAATGCCATCACTGGATGAGATTGCAATA AATATTAACTTTTCTTATGGAGGGCTGCCTCCTGTTCCTACCTTGCCTAAATTTGAGACTTCACCAAGTAATGGCTCTCT GTCTCTCAGTTTGAAGATTTTAAGTCACATTTTTCTCTCTTCATATAATTCTTAGTTCATCATTGCATAAAGTTGTTGCC ATGGATATCTATTAAGATCTATAAATTTGTTCCTTCTCCATTCTCCCTTCACACCTTTTCTTTCTCAAAGAGCACATGTT CAAAAATACATATTTTTTCAATTTCATTAACATGTCTATCATTGAAATGATTTCAGTTCAAAATGGGGATACCAGATCAC CAAAGCGTCTCTGTACAGAACATCGAAATGTGTTAGTGGAACGTAATTCTTTCGCTTCACCAGTAAAAGATCGGCTTCTT CCCTTCAGCAACCTTAAGTCAAAGCTACCACCTCCACCTCCTTTGCAGTCAGCATTTGCCAGGTATAACTTTGATGAGTC TGGAAGTAGCTATCTTTGTAATTTTTCATTATTTTGACTTTTCACCACTTTGCTGTTGCCCTCTTTTGATGCTTTGTTGA ATGTTTATTTCCGATAGTCCAACAAAACCAAATCCAGGAGGTGGAGGGGAAACATGTGCAGAAACTGGGATCAACATCTT TTTTGGCAAGGTATTTGGACTTTCATCATACTCTTATAACCTTGATTGTTAAAAGGACTTGTGAGCTATATGTTACACAG TTTTGTCATTAAAAGTTCATTTCATAACTAATTTTTTTAATTTAGTGGGCCCATAAGTTGCCTCTTGGAATTGGATTATT ACATTACATCACGTCCACTTGAGTTATTACATCCTTGTTCTGATTCATGTGCTCGTTTAAGATTTAATGATTTGTTGCTT CTCTGGTTCATTTTAAGCACTAAAACTTGTGTACACTTCCTTTGTTTCCTAGATTATTAAGTTGGGAGCAGTCAGAATAA GTGGCATGGTTGAAAGGCTACAATTGTCCCAGCAGATAAGGGAGAATGTATACTGTCTTTTCCAGCGGATCCTAAATCAA TGGACATCTCTTTTCTTCAACCGCCATATTGATCAAATCATTTTGTGTTGCTTCTACGGAGTTGCAAAGGTTTCTCTTGA GGCTTAGAAACTTGATATTGCCATGTGTGTTTCTTCGATTATCTTTCTTCATTCCATACTCTTTTGCAGATTTCACAACT GAGCCTAACCTTTAGGGAGATTATATACAACTACAGAAAGCAACCTCATTGCAAACCCCAAGTTTTTCGCAGTGTATTTG TTGATTGGTCATCGGCACGCCGTAATGGAGCATGTAAACAGAGAATAGGACAGGATCATGTCGACATCATTTCATTTTAC AATGAAGTTTTCATTCCATCTGTAAAGCCACTGCTGGTTGAACTTGGCCCTGGTGGAGCAACCATGAAAAGTGACCGAAA GCCTGAAGTTAATAAAAATGACGGTACTTGCTTATTAGCTAAACTGAAAGTAATTATATTCATGACTTCTATTGCTATGC TAGTTCCGCACTCCATTATTGGCTTGTATGCTTTTCTCTTTCCAGCTCACTGTCCCGGGTCTCCTAAAATATCACCTTTT CCAAGCCTCCCGGATATGTCCCCCAAAAAAGTGTCTGCCTCACACAATGTTTATGTCTCTCCGTTACGATCGTCTAAGGT ACATATTTATTTGCCTGGCTTTCTTCTTTGGACTATCTGACATTGTACTGTAGAAGGAAGGAGCATGTGAGGACTGTAAT TGTTGTGCAATAGTGCTGTTACTAACATGATGCGGTTATAACTTGTCCTCAGGCTCACTACATAACACTTAAGCATATAG TTGAAATGGAAAATTTTGTTTTATTTTATGTAATATAAGTGCATTCATTGTTTATGTGCACACACAGATGGATGCTCTAA TATCACATAGCTCAAAAAGCTATTATGCATGTGTTGGGGAGAGCACTCATGCATATCAGAGCCCTTCAAAAGACCTGACC GCAATCAATAACCGTTTGAATGGGTATGCATGCTACTTTCTCTGTTTTTACCTTTGAGAGTTACATGCATTACCAAAAAA ACATGATGTCCTAATTTAATCTGTCACTGTTTTCAGCAACCGCAAGGTCCGAGGTGCCCTCAATTTTGATGATGCGGATG TGGGTTTGGTTAGTGACTCTATGGTTGCAAACAGCCTCTATCAGCAGAATGGTAGCTCTGGATCATCTTCAGGTGCACCA TTGAAGTCTGAACTACTAGACTCTTGA
CDS sequence (LotjaGi3g1v0315700.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATTGAAGTTTACTGGCTTTTTTCCCTACTATATAACATTGCAGATTTTTCTAAAGAGCTTTCTCAGTTTGTTGTCAA GGCTGGTCAAATTTTAAGTAATCTATATGGCACGGATTGGGAAAATAGGCTTAAGGCAAAGGAGATGCATGCCAATGCTA CTCAGTTGGAGATCCTTAGCAAGTACTATAAACGTATATTTGGAGAATTTTTTGTTGCACCTGATGCAAATGTCGAAAAG AACTCAATTGTTACTGTTCATGCATCTGATTACCATCGGTTTGGATGGTTACTTTTCTTGGCACTCCGTGCACATGCTTT CAGCCGTTTCATAAACTTGGTGACTTGCACCAATGGTTTAATTTCAATATTGGCTATCTTAATTATTCATGTCCCTGCTC GTTTTCGGAATTTCAACATTAACGACTCTTCACGCTTTGTTAAGAAAAGTAGCAAAGGTGTTGACCTCCTCGCTTCACTT TGCAAAATATATAACACTTCAGAAGATGAGTTGAGGAAGACCATGGAGATAGCCAATAGTTTAATAGCAGATATATTGAA GAAGAAACCTTGTTTGGCATCTGAATGCGAAACTGAAAACCTAGAGAATTTTGATAGAGATAGCTTGACCTATTTTAAAG ATCTGATGGAGGAATTGTCTCTGCCATCTAGTTTAAACATCTTAGAAAAAGACTATGATGTCATGATTCATGACAAGGGT GAACTGGATGAGAGGCTATTCATTAATGAGGATGACAGCCTGCTAGCTTCAGGAACCTTGTCTGGTAGTTCAGTTTCAGC CAGTGGTCTAAAGAGGAAATTTGATTCGATAGCATCGCCTGCTAAGACTGTTATGAGTCCACTCTCACCCCACCGCTCTC CTGCGTCCAGTGCTAATGGCATTCCAGGTAGCACAAATTCAAAGATGGCAGCCGCCACCCCTGTAAGCACCGCAATGACA ACTGCAAAGTGGCTTCGGACTGTCATTTCTCCACTTGCACCGAAGCCCTCACAAGAGCTAGAGCGATTCTTGGCATCATG TGACAGGGACATTACTAGTGATGTGGTGCGCAGAACTCTGATTATATTGCAGGCTATTTTTCCTAGTAGTCCTCTTGGGG AACGATGTGTAACTGGAGGCCTGCAAAGTGCAAATCTCATGGACAATATATGGGCCGAACAGCGAAGATTGGAAGCACTA AAGTTATACTATAGGGTATTGGAGGCAATGTGCAGAGCAGAAGCCCAAACACTTCATGCAACTAATTTAACTTCTCTACT TACTAATGAGAGGTTTCATAGGTGTATGCTCGCATGTTCTGCAGAATTGGTCCTGGCAACTCACAAGACTGTAACAATGT TGTTCCCTGCAGTACTGGAGAGGACTGGGATTACAGCTTTTGATCTGAGCAAGGTGATTGAAAGTTTCATTAGACATGAA GAATCCCTCCCCAGAGAATTGAGGCGACATCTGAATTCATTGGAAGAACGACTGTTGGAGAGCATGGTATGGGAAAAGGG TTCCTCAATGTATAATTCTTTGGCAGTTGCTAGACCTGCCCTTTCTGCAGAAATCAATCGTCTTGGACTGTTAGCTGAAC CAATGCCATCACTGGATGAGATTGCAATAAATATTAACTTTTCTTATGGAGGGCTGCCTCCTGTTCCTACCTTGCCTAAA TTTGAGACTTCACCAATTCAAAATGGGGATACCAGATCACCAAAGCGTCTCTGTACAGAACATCGAAATGTGTTAGTGGA ACGTAATTCTTTCGCTTCACCAGTAAAAGATCGGCTTCTTCCCTTCAGCAACCTTAAGTCAAAGCTACCACCTCCACCTC CTTTGCAGTCAGCATTTGCCAGTCCAACAAAACCAAATCCAGGAGGTGGAGGGGAAACATGTGCAGAAACTGGGATCAAC ATCTTTTTTGGCAAGATTATTAAGTTGGGAGCAGTCAGAATAAGTGGCATGGTTGAAAGGCTACAATTGTCCCAGCAGAT AAGGGAGAATGTATACTGTCTTTTCCAGCGGATCCTAAATCAATGGACATCTCTTTTCTTCAACCGCCATATTGATCAAA TCATTTTGTGTTGCTTCTACGGAGTTGCAAAGATTTCACAACTGAGCCTAACCTTTAGGGAGATTATATACAACTACAGA AAGCAACCTCATTGCAAACCCCAAGTTTTTCGCAGTGTATTTGTTGATTGGTCATCGGCACGCCGTAATGGAGCATGTAA ACAGAGAATAGGACAGGATCATGTCGACATCATTTCATTTTACAATGAAGTTTTCATTCCATCTGTAAAGCCACTGCTGG TTGAACTTGGCCCTGGTGGAGCAACCATGAAAAGTGACCGAAAGCCTGAAGTTAATAAAAATGACGCTCACTGTCCCGGG TCTCCTAAAATATCACCTTTTCCAAGCCTCCCGGATATGTCCCCCAAAAAAGTGTCTGCCTCACACAATGTTTATGTCTC TCCGTTACGATCGTCTAAGATGGATGCTCTAATATCACATAGCTCAAAAAGCTATTATGCATGTGTTGGGGAGAGCACTC ATGCATATCAGAGCCCTTCAAAAGACCTGACCGCAATCAATAACCGTTTGAATGGCAACCGCAAGGTCCGAGGTGCCCTC AATTTTGATGATGCGGATGTGGGTTTGGTTAGTGACTCTATGGTTGCAAACAGCCTCTATCAGCAGAATGGTAGCTCTGG ATCATCTTCAGGTGCACCATTGAAGTCTGAACTACTAGACTCTTGA
Protein sequence (LotjaGi3g1v0315700.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIEVYWLFSLLYNIADFSKELSQFVVKAGQILSNLYGTDWENRLKAKEMHANATQLEILSKYYKRIFGEFFVAPDANVEK NSIVTVHASDYHRFGWLLFLALRAHAFSRFINLVTCTNGLISILAILIIHVPARFRNFNINDSSRFVKKSSKGVDLLASL CKIYNTSEDELRKTMEIANSLIADILKKKPCLASECETENLENFDRDSLTYFKDLMEELSLPSSLNILEKDYDVMIHDKG ELDERLFINEDDSLLASGTLSGSSVSASGLKRKFDSIASPAKTVMSPLSPHRSPASSANGIPGSTNSKMAAATPVSTAMT TAKWLRTVISPLAPKPSQELERFLASCDRDITSDVVRRTLIILQAIFPSSPLGERCVTGGLQSANLMDNIWAEQRRLEAL KLYYRVLEAMCRAEAQTLHATNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHE ESLPRELRRHLNSLEERLLESMVWEKGSSMYNSLAVARPALSAEINRLGLLAEPMPSLDEIAININFSYGGLPPVPTLPK FETSPIQNGDTRSPKRLCTEHRNVLVERNSFASPVKDRLLPFSNLKSKLPPPPPLQSAFASPTKPNPGGGGETCAETGIN IFFGKIIKLGAVRISGMVERLQLSQQIRENVYCLFQRILNQWTSLFFNRHIDQIILCCFYGVAKISQLSLTFREIIYNYR KQPHCKPQVFRSVFVDWSSARRNGACKQRIGQDHVDIISFYNEVFIPSVKPLLVELGPGGATMKSDRKPEVNKNDAHCPG SPKISPFPSLPDMSPKKVSASHNVYVSPLRSSKMDALISHSSKSYYACVGESTHAYQSPSKDLTAINNRLNGNRKVRGAL NFDDADVGLVSDSMVANSLYQQNGSSGSSSGAPLKSELLDS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SMART | 1 | 130 | 130 | 9.8E-24 | ||
| Phobius | 1 | 109 | 109 | - | – | |
| PANTHER | 12 | 909 | 898 | 0.0 | ||
| PANTHER | 12 | 909 | 898 | 0.0 | ||
| Pfam | 13 | 130 | 118 | 7.0E-24 | ||
| Phobius | 110 | 131 | 22 | - | – | |
| TMHMM | 110 | 132 | 23 | - | – | |
| Phobius | 132 | 921 | 790 | - | – | |
| MobiDBLite | 284 | 308 | 25 | - | – | |
| MobiDBLite | 289 | 308 | 20 | - | – | |
| Gene3D | 311 | 532 | 222 | 1.2E-58 | – | |
| SMART | 313 | 514 | 202 | 3.1E-90 | ||
| Pfam | 313 | 514 | 202 | 4.0E-63 | ||
| SUPERFAMILY | 321 | 516 | 196 | 6.97E-60 | ||
| MobiDBLite | 608 | 631 | 24 | - | – | |
| Gene3D | 612 | 797 | 186 | 1.1E-45 | – | |
| SUPERFAMILY | 637 | 809 | 173 | 8.5E-45 | ||
| Pfam | 639 | 770 | 132 | 4.5E-40 | ||
| MobiDBLite | 783 | 808 | 26 | - | – | |
| MobiDBLite | 901 | 921 | 21 | - | – | |
| MobiDBLite | 901 | 915 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | G1/S transition of mitotic cell cycle | The mitotic cell cycle transition by which a cell in G1 commits to S phase. The process begins with the build up of G1 cyclin-dependent kinase (G1 CDK), resulting in the activation of transcription of G1 cyclins. The process ends with the positive feedback of the G1 cyclins on the G1 CDK which commits the cell to S phase, in which DNA replication is initiated. | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Transcription, DNA-templated | The cellular synthesis of RNA on a template of DNA. | ||
| Biological process | Regulation of transcription by RNA polymerase II | Any process that modulates the frequency, rate or extent of transcription mediated by RNA polymerase II. | ||
| Biological process | Regulation of cell cycle | Any process that modulates the rate or extent of progression through the cell cycle. |
Expression pattern of LotjaGi3g1v0315700.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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