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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0315700 |
| Transcript ID | LotjaGi3g1v0315700.6 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Retinoblastoma-related protein; TAIR: AT3G12280.2 retinoblastoma-related 1; Swiss-Prot: sp|Q9SLZ4|RBR1_PEA Retinoblastoma-related protein 1; TrEMBL-Plants: tr|A0A0R0GFY6|A0A0R0GFY6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0315700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:66864714..66869676) extracted from Lotus japonicus Gifu genome v1.2.
ATAATTCTTTTCCAGTCTGAAGATGCAGAGCGGTACTGGTTTGCTTTTATTTTATACTCAGTCAAGAGATTGACTCAGAA TAGTGAGGAGAGTGGGCAGGAAGAGGTTGAGAACACTGGGCTGACCTTGTGTCGTATATTGAGAGCAGCGAATCTTAAGT ATTTTACTGACTTTTCTTTCTAGCATCTATGATTGAAGTTTACTGGCTTTTTTCCCTACTATATAAGTTTGTAGATTGTC ATATAAGTATATTACTTATTGTTATCATTTATCGTGTATTCAACAGCATTGCAGATTTTTCTAAAGAGCTTTCTCAGTTT GTTGTCAAGGCTGGTCAAATTTTAAGTAATCTATATGGCACGGATTGGGAAAATAGGCTTAAGGTATGACTAAGCAGGGA GTCATGATTACATTTTGCATAGTTTATGTTCATATGTGTGTATCAGCATGTGTGTGATGGTCTCTGTATTTTGTATTCCT TGGAAGCCTTTTTTTTATAAAGCCATTATTTATTTTTCTATGTCTATACCAGGCAAAGGAGATGCATGCCAATGCTACTC AGTTGGAGATCCTTAGCAAGTGAGTGGCCATTGTCTGCATCCACTTCTTAAATTAATGTCTTATGTGGCAATTAGTGCAA CATGCGGACATTGCCATATGAGTTTACTTGACATGACATCTTATAACTTTGATGGTTCCAGGTACTATAAACGTATATTT GGAGAATTTTTTGTTGCACCTGATGCAAATGTCGAAAAGAACTCAATTGTTACTGTTCATGCATCTGATTACCATCGGTT TGGATGGTTACTTTTCTTGGCACTCCGTGCACATGCTTTCAGCCGTTTCATAAACTTGGTGACTTGCACCAATGGTTTAA TTTCAATATTGGTAAGTTAGATTCTTGTAGCTTTAGTCTTTTTCAGCATTGGGTTTTCCCTGAATATGTTTCATATCTTT TTCTTTTTCACATAGAAATAGAATAGACTAAAGAGAATTGTTAGAATTTCAAACACTTGAATTTTTAATAAAATAATTGT TTGGTAACTCTTTTTGTTGTTGGGGGAACAAAGGAAACAATTTCTTACTTGCTGGGTGCATCTATTACAGGCTATCTTAA TTATTCATGTCCCTGCTCGTTTTCGGAATTTCAACATTAACGACTCTTCACGCTTTGGTAATTGTCGTTGTTCTCCTTTC TTCCCTGCATTTTGTTTAGTTATTCTTGCTCTTTTTCATGGAGGCCTGCTCTATGCTCACACACTCATTTACTTGAAGGC TATTTTGGTGGTGGGCTAAAAGTGGCTTCTTCTAATTCTATCAACATTTCTTGCAGTTAAGAAAAGTAGCAAAGGTGTTG ACCTCCTCGCTTCACTTTGCAAAATATATAACACTTCAGAAGATGAGTTGAGGAAGACCATGGAGATAGCCAATAGTTTA ATAGCAGATATATTGAAGAAGAAACCTTGTTTGGCATCTGAATGCGAAACTGAAAACCTAGAGAATTTTGATAGAGGTTC ACTCGCCTTCTGTCATTGGTTATTCATGCATCATTAATATATAATATCTTAAACTGGTGTTTATTATCCCTCTTTGCAGA TAGCTTGACCTATTTTAAAGATCTGATGGAGGAATTGTCTCTGCCATCTAGTTTAAACATCTTAGAAAAAGACTATGATG TCATGATTCATGACAAGGGTGAACTGGATGAGAGGCTATTCATTAATGAGGATGACAGCCTGCTAGCTTCAGGAACCTTG TCTGGTAGTTCAGTTTCAGCCAGTGGTCTAAAGGTATCTTTAATGCAAAATTTGTTCTAACATGTAGTTTTATCTTGGAT AAGACTAATACCTAAAATTACCTACCTTTGCACTCTGTAGAGGAAATTTGATTCGATAGCATCGCCTGCTAAGACTGTTA TGAGTCCACTCTCACCCCACCGCTCTCCTGCGTCCAGTGCTAATGGCATTCCAGGTAGCACAAATTCAAAGATGGCAGCC GCCACCCCTGTAAGCACCGCAATGACAACTGCAAAGTGGCTTCGGACTGTCATTTCTCCACTTGCACCGAAGCCCTCACA AGAGCTAGAGCGATTCTTGGCATCATGTGACAGGGACATTACTAGTGATGTGGTGCGCAGAACTCTGATTATATTGCAGG CTATTTTTCCTAGTAGTCCTCTTGGGGAACGATGTGTAACTGGAGGCCTGCAAAGTGCAAATCTCATGGACAATATATGG GCCGAACAGCGAAGATTGGAAGCACTAAAGTTATACTATAGGGTATTGGAGGCAATGTGCAGAGCAGAAGCCCAAACACT TCATGCAACTAATTTAACTTCTCTACTTACTAATGAGAGGTTTCATAGGTGTATGCTCGCATGTTCTGCAGAATTGGTCC TGGCAACTCACAAGACTGTAACAATGTTGTTCCCTGCAGTACTGGAGAGGACTGGGATTACAGCTTTTGATCTGAGCAAG GTGATTGAAAGTTTCATTAGACATGAAGAATCCCTCCCCAGAGAATTGAGGCGACATCTGAATTCATTGGAAGAACGACT GTTGGAGAGCATGGTATGGGAAAAGGGTTCCTCAATGTATAATTCTTTGGCAGTTGCTAGACCTGCCCTTTCTGCAGAAA TCAATCGTCTTGGACTGTTAGCTGAACCAATGCCATCACTGGATGAGATTGCAATAAATATTAACTTTTCTTATGGAGGG CTGCCTCCTGTTCCTACCTTGCCTAAATTTGAGACTTCACCAAGTAATGGCTCTCTGTCTCTCAGTTTGAAGATTTTAAG TCACATTTTTCTCTCTTCATATAATTCTTAGTTCATCATTGCATAAAGTTGTTGCCATGGATATCTATTAAGATCTATAA ATTTGTTCCTTCTCCATTCTCCCTTCACACCTTTTCTTTCTCAAAGAGCACATGTTCAAAAATACATATTTTTTCAATTT CATTAACATGTCTATCATTGAAATGATTTCAGTTCAAAATGGGGATACCAGATCACCAAAGCGTCTCTGTACAGAACATC GAAATGTGTTAGTGGAACGTAATTCTTTCGCTTCACCAGTAAAAGATCGGCTTCTTCCCTTCAGCAACCTTAAGTCAAAG CTACCACCTCCACCTCCTTTGCAGTCAGCATTTGCCAGGTATAACTTTGATGAGTCTGGAAGTAGCTATCTTTGTAATTT TTCATTATTTTGACTTTTCACCACTTTGCTGTTGCCCTCTTTTGATGCTTTGTTGAATGTTTATTTCCGATAGTCCAACA AAACCAAATCCAGGAGGTGGAGGGGAAACATGTGCAGAAACTGGGATCAACATCTTTTTTGGCAAGGTATTTGGACTTTC ATCATACTCTTATAACCTTGATTGTTAAAAGGACTTGTGAGCTATATGTTACACAGTTTTGTCATTAAAAGTTCATTTCA TAACTAATTTTTTTAATTTAGTGGGCCCATAAGTTGCCTCTTGGAATTGGATTATTACATTACATCACGTCCACTTGAGT TATTACATCCTTGTTCTGATTCATGTGCTCGTTTAAGATTTAATGATTTGTTGCTTCTCTGGTTCATTTTAAGCACTAAA ACTTGTGTACACTTCCTTTGTTTCCTAGATTATTAAGTTGGGAGCAGTCAGAATAAGTGGCATGGTTGAAAGGCTACAAT TGTCCCAGCAGATAAGGGAGAATGTATACTGTCTTTTCCAGCGGATCCTAAATCAATGGACATCTCTTTTCTTCAACCGC CATATTGATCAAATCATTTTGTGTTGCTTCTACGGAGTTGCAAAGGTTTCTCTTGAGGCTTAGAAACTTGATATTGCCAT GTGTGTTTCTTCGATTATCTTTCTTCATTCCATACTCTTTTGCAGATTTCACAACTGAGCCTAACCTTTAGGGAGATTAT ATACAACTACAGAAAGCAACCTCATTGCAAACCCCAAGTTTTTCGCAGTGTATTTGTTGATTGGTCATCGGCACGCCGTA ATGGAGCATGTAAACAGAGAATAGGACAGGATCATGTCGACATCATTTCATTTTACAATGAAGTTTTCATTCCATCTGTA AAGCCACTGCTGGTTGAACTTGGCCCTGGTGGAGCAACCATGAAAAGTGACCGAAAGCCTGAAGTTAATAAAAATGACGG TACTTGCTTATTAGCTAAACTGAAAGTAATTATATTCATGACTTCTATTGCTATGCTAGTTCCGCACTCCATTATTGGCT TGTATGCTTTTCTCTTTCCAGCTCACTGTCCCGGGTCTCCTAAAATATCACCTTTTCCAAGCCTCCCGGATATGTCCCCC AAAAAAGTGTCTGCCTCACACAATGTTTATGTCTCTCCGTTACGATCGTCTAAGGTACATATTTATTTGCCTGGCTTTCT TCTTTGGACTATCTGACATTGTACTGTAGAAGGAAGGAGCATGTGAGGACTGTAATTGTTGTGCAATAGTGCTGTTACTA ACATGATGCGGTTATAACTTGTCCTCAGGCTCACTACATAACACTTAAGCATATAGTTGAAATGGAAAATTTTGTTTTAT TTTATGTAATATAAGTGCATTCATTGTTTATGTGCACACACAGATGGATGCTCTAATATCACATAGCTCAAAAAGCTATT ATGCATGTGTTGGGGAGAGCACTCATGCATATCAGAGCCCTTCAAAAGACCTGACCGCAATCAATAACCGTTTGAATGGG TATGCATGCTACTTTCTCTGTTTTTACCTTTGAGAGTTACATGCATTACCAAAAAAACATGATGTCCTAATTTAATCTGT CACTGTTTTCAGCAACCGCAAGGTCCGAGGTGCCCTCAATTTTGATGATGCGGATGTGGGTTTGGTTAGTGACTCTATGG TTGCAAACAGCCTCTATCAGCAGAATGGTAGCTCTGGATCATCTTCAGGTGCACCATTGAAGTCTGAACTACTAGACTCT TGA
CDS sequence (LotjaGi3g1v0315700.6) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCATGCCAATGCTACTCAGTTGGAGATCCTTAGCAAGTACTATAAACGTATATTTGGAGAATTTTTTGTTGCACCTGA TGCAAATGTCGAAAAGAACTCAATTGTTACTGTTCATGCATCTGATTACCATCGGTTTGGATGGTTACTTTTCTTGGCAC TCCGTGCACATGCTTTCAGCCGTTTCATAAACTTGGTGACTTGCACCAATGGTTTAATTTCAATATTGGCTATCTTAATT ATTCATGTCCCTGCTCGTTTTCGGAATTTCAACATTAACGACTCTTCACGCTTTGTTAAGAAAAGTAGCAAAGGTGTTGA CCTCCTCGCTTCACTTTGCAAAATATATAACACTTCAGAAGATGAGTTGAGGAAGACCATGGAGATAGCCAATAGTTTAA TAGCAGATATATTGAAGAAGAAACCTTGTTTGGCATCTGAATGCGAAACTGAAAACCTAGAGAATTTTGATAGAGATAGC TTGACCTATTTTAAAGATCTGATGGAGGAATTGTCTCTGCCATCTAGTTTAAACATCTTAGAAAAAGACTATGATGTCAT GATTCATGACAAGGGTGAACTGGATGAGAGGCTATTCATTAATGAGGATGACAGCCTGCTAGCTTCAGGAACCTTGTCTG GTAGTTCAGTTTCAGCCAGTGGTCTAAAGAGGAAATTTGATTCGATAGCATCGCCTGCTAAGACTGTTATGAGTCCACTC TCACCCCACCGCTCTCCTGCGTCCAGTGCTAATGGCATTCCAGGTAGCACAAATTCAAAGATGGCAGCCGCCACCCCTGT AAGCACCGCAATGACAACTGCAAAGTGGCTTCGGACTGTCATTTCTCCACTTGCACCGAAGCCCTCACAAGAGCTAGAGC GATTCTTGGCATCATGTGACAGGGACATTACTAGTGATGTGGTGCGCAGAACTCTGATTATATTGCAGGCTATTTTTCCT AGTAGTCCTCTTGGGGAACGATGTGTAACTGGAGGCCTGCAAAGTGCAAATCTCATGGACAATATATGGGCCGAACAGCG AAGATTGGAAGCACTAAAGTTATACTATAGGGTATTGGAGGCAATGTGCAGAGCAGAAGCCCAAACACTTCATGCAACTA ATTTAACTTCTCTACTTACTAATGAGAGGTTTCATAGGTGTATGCTCGCATGTTCTGCAGAATTGGTCCTGGCAACTCAC AAGACTGTAACAATGTTGTTCCCTGCAGTACTGGAGAGGACTGGGATTACAGCTTTTGATCTGAGCAAGGTGATTGAAAG TTTCATTAGACATGAAGAATCCCTCCCCAGAGAATTGAGGCGACATCTGAATTCATTGGAAGAACGACTGTTGGAGAGCA TGGTATGGGAAAAGGGTTCCTCAATGTATAATTCTTTGGCAGTTGCTAGACCTGCCCTTTCTGCAGAAATCAATCGTCTT GGACTGTTAGCTGAACCAATGCCATCACTGGATGAGATTGCAATAAATATTAACTTTTCTTATGGAGGGCTGCCTCCTGT TCCTACCTTGCCTAAATTTGAGACTTCACCAAGTAATGTTCAAAATGGGGATACCAGATCACCAAAGCGTCTCTGTACAG AACATCGAAATGTGTTAGTGGAACGTAATTCTTTCGCTTCACCAGTAAAAGATCGGCTTCTTCCCTTCAGCAACCTTAAG TCAAAGCTACCACCTCCACCTCCTTTGCAGTCAGCATTTGCCAGTCCAACAAAACCAAATCCAGGAGGTGGAGGGGAAAC ATGTGCAGAAACTGGGATCAACATCTTTTTTGGCAAGATTATTAAGTTGGGAGCAGTCAGAATAAGTGGCATGGTTGAAA GGCTACAATTGTCCCAGCAGATAAGGGAGAATGTATACTGTCTTTTCCAGCGGATCCTAAATCAATGGACATCTCTTTTC TTCAACCGCCATATTGATCAAATCATTTTGTGTTGCTTCTACGGAGTTGCAAAGATTTCACAACTGAGCCTAACCTTTAG GGAGATTATATACAACTACAGAAAGCAACCTCATTGCAAACCCCAAGTTTTTCGCAGTGTATTTGTTGATTGGTCATCGG CACGCCGTAATGGAGCATGTAAACAGAGAATAGGACAGGATCATGTCGACATCATTTCATTTTACAATGAAGTTTTCATT CCATCTGTAAAGCCACTGCTGGTTGAACTTGGCCCTGGTGGAGCAACCATGAAAAGTGACCGAAAGCCTGAAGTTAATAA AAATGACGGTACTTCTCACTGTCCCGGGTCTCCTAAAATATCACCTTTTCCAAGCCTCCCGGATATGTCCCCCAAAAAAG TGTCTGCCTCACACAATGTTTATGTCTCTCCGTTACGATCGTCTAAGATGGATGCTCTAATATCACATAGCTCAAAAAGC TATTATGCATGTGTTGGGGAGAGCACTCATGCATATCAGAGCCCTTCAAAAGACCTGACCGCAATCAATAACCGTTTGAA TGGCAACCGCAAGGTCCGAGGTGCCCTCAATTTTGATGATGCGGATGTGGGTTTGGTTAGTGACTCTATGGTTGCAAACA GCCTCTATCAGCAGAATGGTAGCTCTGGATCATCTTCAGGTGCACCATTGAAGTCTGAACTACTAGACTCTTGA
Protein sequence (LotjaGi3g1v0315700.6) extracted from Lotus japonicus Gifu v1.2 Proteins.
MHANATQLEILSKYYKRIFGEFFVAPDANVEKNSIVTVHASDYHRFGWLLFLALRAHAFSRFINLVTCTNGLISILAILI IHVPARFRNFNINDSSRFVKKSSKGVDLLASLCKIYNTSEDELRKTMEIANSLIADILKKKPCLASECETENLENFDRDS LTYFKDLMEELSLPSSLNILEKDYDVMIHDKGELDERLFINEDDSLLASGTLSGSSVSASGLKRKFDSIASPAKTVMSPL SPHRSPASSANGIPGSTNSKMAAATPVSTAMTTAKWLRTVISPLAPKPSQELERFLASCDRDITSDVVRRTLIILQAIFP SSPLGERCVTGGLQSANLMDNIWAEQRRLEALKLYYRVLEAMCRAEAQTLHATNLTSLLTNERFHRCMLACSAELVLATH KTVTMLFPAVLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSLAVARPALSAEINRL GLLAEPMPSLDEIAININFSYGGLPPVPTLPKFETSPSNVQNGDTRSPKRLCTEHRNVLVERNSFASPVKDRLLPFSNLK SKLPPPPPLQSAFASPTKPNPGGGGETCAETGINIFFGKIIKLGAVRISGMVERLQLSQQIRENVYCLFQRILNQWTSLF FNRHIDQIILCCFYGVAKISQLSLTFREIIYNYRKQPHCKPQVFRSVFVDWSSARRNGACKQRIGQDHVDIISFYNEVFI PSVKPLLVELGPGGATMKSDRKPEVNKNDGTSHCPGSPKISPFPSLPDMSPKKVSASHNVYVSPLRSSKMDALISHSSKS YYACVGESTHAYQSPSKDLTAINNRLNGNRKVRGALNFDDADVGLVSDSMVANSLYQQNGSSGSSSGAPLKSELLDS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 61 | 61 | - | – | |
| Pfam | 1 | 82 | 82 | 3.1E-17 | ||
| SMART | 1 | 82 | 82 | 0.0081 | ||
| PANTHER | 3 | 865 | 863 | 0.0 | ||
| PANTHER | 3 | 865 | 863 | 0.0 | ||
| Phobius | 62 | 83 | 22 | - | – | |
| TMHMM | 62 | 84 | 23 | - | – | |
| Phobius | 84 | 877 | 794 | - | – | |
| MobiDBLite | 236 | 260 | 25 | - | – | |
| MobiDBLite | 241 | 260 | 20 | - | – | |
| Gene3D | 263 | 484 | 222 | 1.1E-58 | – | |
| Pfam | 265 | 466 | 202 | 3.7E-63 | ||
| SMART | 265 | 466 | 202 | 3.1E-90 | ||
| SUPERFAMILY | 273 | 468 | 196 | 6.29E-60 | ||
| MobiDBLite | 563 | 585 | 23 | - | – | |
| Gene3D | 566 | 748 | 183 | 1.0E-45 | – | |
| SUPERFAMILY | 591 | 765 | 175 | 1.02E-44 | ||
| Pfam | 593 | 724 | 132 | 4.2E-40 | ||
| MobiDBLite | 737 | 769 | 33 | - | – | |
| MobiDBLite | 857 | 877 | 21 | - | – | |
| MobiDBLite | 857 | 871 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | G1/S transition of mitotic cell cycle | The mitotic cell cycle transition by which a cell in G1 commits to S phase. The process begins with the build up of G1 cyclin-dependent kinase (G1 CDK), resulting in the activation of transcription of G1 cyclins. The process ends with the positive feedback of the G1 cyclins on the G1 CDK which commits the cell to S phase, in which DNA replication is initiated. | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Transcription, DNA-templated | The cellular synthesis of RNA on a template of DNA. | ||
| Biological process | Regulation of transcription by RNA polymerase II | Any process that modulates the frequency, rate or extent of transcription mediated by RNA polymerase II. | ||
| Biological process | Regulation of cell cycle | Any process that modulates the rate or extent of progression through the cell cycle. |
Expression pattern of LotjaGi3g1v0315700.6, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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