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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0323900 |
| Transcript ID | LotjaGi3g1v0323900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein family; TAIR: AT5G39710.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710; TrEMBL-Plants: tr|A0A0L9UTZ7|A0A0L9UTZ7_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0323900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:68936046..68938660) extracted from Lotus japonicus Gifu genome v1.2.
GACAGTTTTTTTTTTGGGCAAATAGATACTGGTTTCATTGAAAAAGTGCAGCATAAAACGGGCAAGTGGCCCAACCCAGT ACACAAACAAAGTATTTTGTTTTTGAAATGGACACAAACAGTAAGAATGGTGAAATGACCTAGTTAAATTAGAAGCTAGA AAGTTGTTCATTGCATCCTTGTTGCCGATCTTCCCACACAATGAAGCTCCTCCGTGCTTCATTCACCGCCGCCCTCAAAA TGGCACTGAACGTTAACATTTACAACGGGATGATCCGCGGCTTCGCCACCGCCGCTGGGAAATCAGATTCAGAATCGAAG AAGGTGGGGGAAGCGTTTCAGTCGTTGAAGCGGTTGTGCCGGGAAGGGAGGATACCAGAGGCTGAGCAGATGCTTGAGGT GATGAAATGCAAGGGTTTGTTCCTTGATGAGAGGACTTACTCGTCTGTCATTGGTTGGTTCTGCAACCTGAATAAGATTG ATTCGGCTCATACCCTTTTGAGTGAAATGATTGCTAAGGGTTTTTCACCCTCGGTTGTTACATACAACTCACTTGTTTTT GCATATTGCCGTCGGGATAGTGTTGATAAGGCTGTGGGAATTCTGAGGGCCATGGCTGAGAGAGGTTTGTCTCCTGATGT TGATAGTTATAACCGTGTTATTTCTAAGTTTTGCAAAATGGAGGAGCTGGAGGAGGCTCTTGAAATGAAGGAGGAGATGG TTGATAAGGGCATCTTTCCTGATGCTGCGACGTATTCGTCGCTTATGGAGGCCTTGTGCGTAGAGCAAAGACTGTCGGAA GCTTTTGATCTCTTCCGAGAGATGCTGCGCGGGGGTGTGTCGCCAGATGAGCTTACTTATACTAGATTGCTGAATGCTTG TTGTCTTGTAGGTGAATTCACTAAGGCTTTTCATTTGCATGATGAAATGATACACAAGGGGTTTTTGCCTGATTTTGTTA CTGGGTTTTCGCCGGCTATTGTTACATACAATGCGCTTATTCATGGGCTTTGCTTTTTGGATAGGGTTGAGGAGGCTCTG GAGATTTTGAGGGGCATGCCTGAGATGGGGTTGTCCCCTAATGCTGTTAGTTATAGCACTGTTATATCCGGGTTTTGCCA AATCGGGGAGCTGGGGAAGGCGTATGAATTGAAGATTGAGACGGAGGACAAGGCCATCTGGTGGCTCGATGAAGACACGT ATGATTCACTTATGGACAGCCTGTCGTATGAGGATACTTATTCTAGTGTGATGAATGACTACTTAGCTGAAGGTAACATG CAAAGGGCTTTGCAATTGGATCATGATATGTCACGTGATGGTTATTTGTCAAGTTATGTTGCCTATAGTGTGCTTATTAA TGGACTTCATAAGAAAGCTAGGACAAGAGAAGCTAAGAGGGATCTTTTATATATAGCTTCTGATGGCTTTTTGTCTATGC CATCTTACACAGTATATGATATTCTTTTAGAGAACTGCAGTAATAGTGAATTTAAGAGTCTGGTAGAGCTTGTTAAAGAT TATAGTATGAGGGATTTATCGGACGACGCAGCCACAGCTCATACCACAATGCTTCACCTGAAAAATAAGACAGATGGAGA AAATAAGACAGATGGAGGAATGTATAACCTGTTAATATTTGAACATTGTAGATCCCATAATGTTCATAAGGCGTATAATA TGTACATGGAGATGGTGCATTATGGTCATGCTCCGCACATGTTTTCTGTACTTGCTCTTATTAGTGCTCTAGATGATGAT AGAATGTACAATGAGATGTCTTGGGTAATTAATAACACATTGAGGAGCTGTAATCTCAGTGATTCTGAGCAGCTTAAAGT GCTTAGTGAAATTAATGTCACGAAATCTGAAATTTATGCTCTTTTGGATGTGTTAGCTGAAATGGCCATGGATAGCCTGT TACTTGATGGTGGAAAGTGTTCATATGCTCCAGCATCCCGCCATGTCCACTTCTCTGCTGCCACCATTATTGTCTTCCTG ATTTTAATCCTAAGAGGTACTTCTTTTTTCATCCTTATGCTTGCTTCTGATGGGATTTGGGGTTCAGGGTAGGTGTGGCA AAATGAGCTTGGCCCACCAATCCAACCTCAAAAATATTAGGCAGGCTGGGCTGGGGATAGGGAGAGCCCACCAGCCTGCA TAACCTGCCCCATTTTAGCCCGCAAGTTGACAGGTTGAGGGGGCTAGCCCGTGAGCTGTTTGTCTTTTTGTTAAAAAATA TATAGGCTGGGTTGGGCAAGTTTGTGTTACTGCTGGGCTGGGATTTTTTTCTTTTTTGTTTAGTTGTTTTTGTTGCTATG CATTTGTTGAATTGGATGTGATTAATGTGATTGTTTTACTTAGTTGGCAGCATTTTGTTGGCACAATGCTCCATGTTTTG TAATTTCTGCATCTCTATAATGGTATGGATATGGTTTATTAGTACTGAGATTTTGTTCTTTAAACTGCAGTTTATTCGTC CCCTAGCTATTTTTAACCCCTTTTTGTGTGGATATACAAACTTTAGATGCTGAGCTTGCAACTGTGTTTTATAAAATTAT AAAACGGAGCCTTTTCCTGTTTTCTTTCATTACAATATATGGATCATTTAAATCA
CDS sequence (LotjaGi3g1v0323900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGCTCCTCCGTGCTTCATTCACCGCCGCCCTCAAAATGGCACTGAACGTTAACATTTACAACGGGATGATCCGCGG CTTCGCCACCGCCGCTGGGAAATCAGATTCAGAATCGAAGAAGGTGGGGGAAGCGTTTCAGTCGTTGAAGCGGTTGTGCC GGGAAGGGAGGATACCAGAGGCTGAGCAGATGCTTGAGGTGATGAAATGCAAGGGTTTGTTCCTTGATGAGAGGACTTAC TCGTCTGTCATTGGTTGGTTCTGCAACCTGAATAAGATTGATTCGGCTCATACCCTTTTGAGTGAAATGATTGCTAAGGG TTTTTCACCCTCGGTTGTTACATACAACTCACTTGTTTTTGCATATTGCCGTCGGGATAGTGTTGATAAGGCTGTGGGAA TTCTGAGGGCCATGGCTGAGAGAGGTTTGTCTCCTGATGTTGATAGTTATAACCGTGTTATTTCTAAGTTTTGCAAAATG GAGGAGCTGGAGGAGGCTCTTGAAATGAAGGAGGAGATGGTTGATAAGGGCATCTTTCCTGATGCTGCGACGTATTCGTC GCTTATGGAGGCCTTGTGCGTAGAGCAAAGACTGTCGGAAGCTTTTGATCTCTTCCGAGAGATGCTGCGCGGGGGTGTGT CGCCAGATGAGCTTACTTATACTAGATTGCTGAATGCTTGTTGTCTTGTAGGTGAATTCACTAAGGCTTTTCATTTGCAT GATGAAATGATACACAAGGGGTTTTTGCCTGATTTTGTTACTGGGTTTTCGCCGGCTATTGTTACATACAATGCGCTTAT TCATGGGCTTTGCTTTTTGGATAGGGTTGAGGAGGCTCTGGAGATTTTGAGGGGCATGCCTGAGATGGGGTTGTCCCCTA ATGCTGTTAGTTATAGCACTGTTATATCCGGGTTTTGCCAAATCGGGGAGCTGGGGAAGGCGTATGAATTGAAGATTGAG ACGGAGGACAAGGCCATCTGGTGGCTCGATGAAGACACGTATGATTCACTTATGGACAGCCTGTCGTATGAGGATACTTA TTCTAGTGTGATGAATGACTACTTAGCTGAAGGTAACATGCAAAGGGCTTTGCAATTGGATCATGATATGTCACGTGATG GTTATTTGTCAAGTTATGTTGCCTATAGTGTGCTTATTAATGGACTTCATAAGAAAGCTAGGACAAGAGAAGCTAAGAGG GATCTTTTATATATAGCTTCTGATGGCTTTTTGTCTATGCCATCTTACACAGTATATGATATTCTTTTAGAGAACTGCAG TAATAGTGAATTTAAGAGTCTGGTAGAGCTTGTTAAAGATTATAGTATGAGGGATTTATCGGACGACGCAGCCACAGCTC ATACCACAATGCTTCACCTGAAAAATAAGACAGATGGAGAAAATAAGACAGATGGAGGAATGTATAACCTGTTAATATTT GAACATTGTAGATCCCATAATGTTCATAAGGCGTATAATATGTACATGGAGATGGTGCATTATGGTCATGCTCCGCACAT GTTTTCTGTACTTGCTCTTATTAGTGCTCTAGATGATGATAGAATGTACAATGAGATGTCTTGGGTAATTAATAACACAT TGAGGAGCTGTAATCTCAGTGATTCTGAGCAGCTTAAAGTGCTTAGTGAAATTAATGTCACGAAATCTGAAATTTATGCT CTTTTGGATGTGTTAGCTGAAATGGCCATGGATAGCCTGTTACTTGATGGTGGAAAGTGTTCATATGCTCCAGCATCCCG CCATGTCCACTTCTCTGCTGCCACCATTATTGTCTTCCTGATTTTAATCCTAAGAGGTACTTCTTTTTTCATCCTTATGC TTGCTTCTGATGGGATTTGGGGTTCAGGGTAG
Protein sequence (LotjaGi3g1v0323900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKLLRASFTAALKMALNVNIYNGMIRGFATAAGKSDSESKKVGEAFQSLKRLCREGRIPEAEQMLEVMKCKGLFLDERTY SSVIGWFCNLNKIDSAHTLLSEMIAKGFSPSVVTYNSLVFAYCRRDSVDKAVGILRAMAERGLSPDVDSYNRVISKFCKM EELEEALEMKEEMVDKGIFPDAATYSSLMEALCVEQRLSEAFDLFREMLRGGVSPDELTYTRLLNACCLVGEFTKAFHLH DEMIHKGFLPDFVTGFSPAIVTYNALIHGLCFLDRVEEALEILRGMPEMGLSPNAVSYSTVISGFCQIGELGKAYELKIE TEDKAIWWLDEDTYDSLMDSLSYEDTYSSVMNDYLAEGNMQRALQLDHDMSRDGYLSSYVAYSVLINGLHKKARTREAKR DLLYIASDGFLSMPSYTVYDILLENCSNSEFKSLVELVKDYSMRDLSDDAATAHTTMLHLKNKTDGENKTDGGMYNLLIF EHCRSHNVHKAYNMYMEMVHYGHAPHMFSVLALISALDDDRMYNEMSWVINNTLRSCNLSDSEQLKVLSEINVTKSEIYA LLDVLAEMAMDSLLLDGGKCSYAPASRHVHFSAATIIVFLILILRGTSFFILMLASDGIWGSG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 588 | 588 | - | – | |
| Gene3D | 7 | 159 | 153 | 1.5E-28 | ||
| ProSiteProfiles | 41 | 75 | 35 | 6.303 | ||
| PANTHER | 50 | 318 | 269 | 1.5E-82 | – | |
| PANTHER | 50 | 318 | 269 | 1.5E-82 | – | |
| Pfam | 52 | 73 | 22 | 0.083 | ||
| ProSiteProfiles | 76 | 110 | 35 | 11.246 | ||
| Pfam | 78 | 124 | 47 | 8.4E-11 | ||
| TIGRFAM | 79 | 112 | 34 | 1.3E-6 | ||
| SUPERFAMILY | 87 | 246 | 160 | 2.99E-8 | ||
| ProSiteProfiles | 111 | 145 | 35 | 12.222 | ||
| TIGRFAM | 113 | 147 | 35 | 1.7E-7 | ||
| Pfam | 145 | 193 | 49 | 2.2E-14 | ||
| ProSiteProfiles | 146 | 180 | 35 | 12.189 | ||
| TIGRFAM | 149 | 182 | 34 | 3.3E-7 | ||
| Gene3D | 160 | 254 | 95 | 5.6E-26 | ||
| ProSiteProfiles | 181 | 215 | 35 | 12.912 | ||
| TIGRFAM | 184 | 217 | 34 | 1.5E-8 | ||
| Pfam | 212 | 243 | 32 | 7.2E-6 | ||
| ProSiteProfiles | 216 | 250 | 35 | 11.926 | ||
| TIGRFAM | 219 | 251 | 33 | 2.8E-7 | ||
| Gene3D | 255 | 343 | 89 | 4.9E-19 | ||
| Pfam | 258 | 307 | 50 | 7.8E-15 | ||
| ProSiteProfiles | 259 | 293 | 35 | 12.112 | ||
| TIGRFAM | 261 | 295 | 35 | 1.2E-7 | ||
| ProSiteProfiles | 294 | 324 | 31 | 8.155 | ||
| ProSiteProfiles | 343 | 377 | 35 | 8.013 | ||
| Gene3D | 344 | 460 | 117 | 6.6E-7 | ||
| PANTHER | 345 | 454 | 110 | 1.5E-82 | – | |
| PANTHER | 345 | 454 | 110 | 1.5E-82 | – | |
| ProSiteProfiles | 378 | 412 | 35 | 6.643 | ||
| Gene3D | 461 | 563 | 103 | 1.9E-5 | ||
| ProSiteProfiles | 471 | 505 | 35 | 9.536 | ||
| Pfam | 474 | 502 | 29 | 0.037 | ||
| Phobius | 589 | 615 | 27 | - | – | |
| TMHMM | 593 | 615 | 23 | - | – | |
| Phobius | 616 | 623 | 8 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0323900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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