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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0329500 |
| Transcript ID | LotjaGi3g1v0329500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Leucine-rich repeat receptor-like protein kinase family protein; TAIR: AT1G33590.2 Leucine-rich repeat (LRR) family protein; Swiss-Prot: sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1; TrEMBL-Plants: tr|I3SE14|I3SE14_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0329500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:69708763..69711295) extracted from Lotus japonicus Gifu genome v1.2.
TTGGCCACTTAGATTTTGTTGCCTACTCCAATTAAAACTTTGTAATCGTACATTACAATTTTATGAAAATTGAGATCAAG TGATGTTTAATGGATAAGGCGAAGATGTGAATTAGTGTCAACTTATGAATGGTTTGAAAAAGATTTTGGCAAATAAAACT ATCTAGAGTGGTCTACCCTATTGTCCCTACACACGATTTTTTATGGAAAATAAAACTATGTGCCAACCGAGAACAAGTCT CTTTCAAGACTTATTATCACAAGTGCATACTAGCTACTCTTGCATGTGCTGGATTCAAGGGTTGTGTCATCTTGCAAATT CTCATGATGTTGGGCTGACCCTACAGTTTGACTTCAAATGTGGAGGCTCTGCTTCAAGATAAACATCACAAAACCATCAC CCCTTCAAGTCCCAAAGACGAGTAAACAACCCCAACCATGGTGTCCTAGTCAAACTTGCTCACTTTTACTCTTCCTTTAA AAACCCAAACCTTATCTTCACACCATTTATTTCACATCTCACCTCATCTATCTCCCAATTCCTCATGTTCATGAAACACA AAATGAACCTCTACCTCTCCAAACTTCTCATCCTCTTTGCTATCTTCACCCTCCTACACCTCAAAGCCAATGGAGCCAAA TGCAACGTGGACGATGAAGCAGGCCTAATGGGCTTCAAATCCGGTATCAAATCCGACCCATCCGGCATACTCAAGTCATG GATACCGGGTACGGATTGCTGCACTTGGCAAGGAGTAACATGCCTATTCGATGACAAACGGGTCACAAGCCTTTACCTAT CCGGAAACCCCGAAAACCCAAAAAGCTTCTTTTCGGGTACCATTTCACCCTCCCTCTCAAAAATCAAAAACCTTGATGGA TTCTACCTCCTAAACCTGAAAAACATTTCGGGTCCATTCCCGGGTTTCCTCTTCAAACTACCCAAACTCCAATTCATCTA CATCGAAAACAACCAACTCTCGGGTCGGATACCCGAAAACATCGGAAACCTGACCCGGTTAGATGTACTAAGTCTCACCG GAAACCGGTTCACCGGAACGATCCCGAGTTCAGTGGGTGGGTTGACTCACCTGACTCAGCTCCAACTCGGTAACAACTCA CTCACCGGAACGATTCCGGCGACAATTGCAAGGCTGAAGAATCTGACGTATCTCAGCCTCGAAGGGAACCAGTTTTCAGG TGCTATACCGGATTTCTTCTCCTCTTTCACCGACCTCGGGATTCTCAGACTTTCCCGGAATAAATTTTCCGGGAAAATCC CAGCTTCGATTTCTACTCTCGCGCCGAAACTGAGGTACTTGGAGCTCGGGCACAATCAACTTTCCGGGAAAATCCCAGAT TTTCTCGGGAAATTCAGAGCGTTAGATACTCTCGACCTCTCGTCTAACCGATTCTCAGGGACGGTGCCGGCGAGTTTCAA GAACCTGACGAAGATTTTCAATCTCAACCTCGCCAACAATCTCCTCGTAGACCCATTTCCCGAAATGAACGTGAAAGGCA TCGAATCATTGGATTTGTCGAACAACATGTTCCATTTGAATCAAATCCCGAAGTGGGTCACTTCATCTCCGATCATCTTC TCGTTGAAGCTCGCACGGTGTGGGATAAAGATGAAGCTCGATGATTGGAAGCCTGCAGAGACGTACTTCTATGACTTCAT TGATCTTTCTGGGAATGAGATTTCAGGGAGTGCGGTTGGTTTGGTGAATAGTACAGAGTATTTGGTGGGGTTTTGGGGTT CTGGGAATAAGTTGAAGTTTGATTTTGAGAGATTGAAATTTGGGGAGAGGTTTAAGTATTTGGATTTGTCTCATAATTTG GTGTTTGGGAAAGTTCCTAAGAGTGTTGCTGGGCTTGAGAAGTTGAATGTGAGCTACAATCATCTTTGTGGTGAGATTCC AAAGACTAAGTTTCCAGCTAGTGCTTTTGTGGGGAATGATTGTTTGTGTGGTGCTCCTTTGCAGCCATGCAAAAAAGCAT AGAGTTCTTCTCTTCTTCCACTTCTTGTTTTAGTTTTGTTGTTGCCCTTGTGTTTTGCAGGGTCAATCATGTCTGGTAAA TGGAATAAATTTAGTTTAAGACAGACATAATTGTGATTAAGTTTAGTCTAATAAAAGTTATTTTTCCACTCACTTGTGTT TGCTTGCTTCAGTTGGATGATGGTTTGTTAATTGCTTAGGGTGCAGATAATGTGGTCTCTGTGAAGAGTACTACTACGAC TTCAGTTAGTAGTTTTCATATTTAGGGAGAAATTACTCACTTTGGATTTTATAATCTTCCTAAAATGTGATTAGAAACAA TGTGCTTAATAAAAAACTCACTCATTAATTGATTGATATCTATCATCTAAATTTAAGAAGATGTGGGGCAATCCAATAAC TTGAGGTTTTGCGTTTGGAGTCGTTTTTTGTCATGTTATTTATATACCAATAACAGTAACTTGAGCACTAAATTGTAAAC GGCTGACCATGAAATATATTCTAAATAAATTATGTTATCATTAGGTAATAATT
CDS sequence (LotjaGi3g1v0329500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTCATGAAACACAAAATGAACCTCTACCTCTCCAAACTTCTCATCCTCTTTGCTATCTTCACCCTCCTACACCTCAA AGCCAATGGAGCCAAATGCAACGTGGACGATGAAGCAGGCCTAATGGGCTTCAAATCCGGTATCAAATCCGACCCATCCG GCATACTCAAGTCATGGATACCGGGTACGGATTGCTGCACTTGGCAAGGAGTAACATGCCTATTCGATGACAAACGGGTC ACAAGCCTTTACCTATCCGGAAACCCCGAAAACCCAAAAAGCTTCTTTTCGGGTACCATTTCACCCTCCCTCTCAAAAAT CAAAAACCTTGATGGATTCTACCTCCTAAACCTGAAAAACATTTCGGGTCCATTCCCGGGTTTCCTCTTCAAACTACCCA AACTCCAATTCATCTACATCGAAAACAACCAACTCTCGGGTCGGATACCCGAAAACATCGGAAACCTGACCCGGTTAGAT GTACTAAGTCTCACCGGAAACCGGTTCACCGGAACGATCCCGAGTTCAGTGGGTGGGTTGACTCACCTGACTCAGCTCCA ACTCGGTAACAACTCACTCACCGGAACGATTCCGGCGACAATTGCAAGGCTGAAGAATCTGACGTATCTCAGCCTCGAAG GGAACCAGTTTTCAGGTGCTATACCGGATTTCTTCTCCTCTTTCACCGACCTCGGGATTCTCAGACTTTCCCGGAATAAA TTTTCCGGGAAAATCCCAGCTTCGATTTCTACTCTCGCGCCGAAACTGAGGTACTTGGAGCTCGGGCACAATCAACTTTC CGGGAAAATCCCAGATTTTCTCGGGAAATTCAGAGCGTTAGATACTCTCGACCTCTCGTCTAACCGATTCTCAGGGACGG TGCCGGCGAGTTTCAAGAACCTGACGAAGATTTTCAATCTCAACCTCGCCAACAATCTCCTCGTAGACCCATTTCCCGAA ATGAACGTGAAAGGCATCGAATCATTGGATTTGTCGAACAACATGTTCCATTTGAATCAAATCCCGAAGTGGGTCACTTC ATCTCCGATCATCTTCTCGTTGAAGCTCGCACGGTGTGGGATAAAGATGAAGCTCGATGATTGGAAGCCTGCAGAGACGT ACTTCTATGACTTCATTGATCTTTCTGGGAATGAGATTTCAGGGAGTGCGGTTGGTTTGGTGAATAGTACAGAGTATTTG GTGGGGTTTTGGGGTTCTGGGAATAAGTTGAAGTTTGATTTTGAGAGATTGAAATTTGGGGAGAGGTTTAAGTATTTGGA TTTGTCTCATAATTTGGTGTTTGGGAAAGTTCCTAAGAGTGTTGCTGGGCTTGAGAAGTTGAATGTGAGCTACAATCATC TTTGTGGTGAGATTCCAAAGACTAAGTTTCCAGCTAGTGCTTTTGTGGGGAATGATTGTTTGTGTGGTGCTCCTTTGCAG CCATGCAAAAAAGCATAG
Protein sequence (LotjaGi3g1v0329500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFMKHKMNLYLSKLLILFAIFTLLHLKANGAKCNVDDEAGLMGFKSGIKSDPSGILKSWIPGTDCCTWQGVTCLFDDKRV TSLYLSGNPENPKSFFSGTISPSLSKIKNLDGFYLLNLKNISGPFPGFLFKLPKLQFIYIENNQLSGRIPENIGNLTRLD VLSLTGNRFTGTIPSSVGGLTHLTQLQLGNNSLTGTIPATIARLKNLTYLSLEGNQFSGAIPDFFSSFTDLGILRLSRNK FSGKIPASISTLAPKLRYLELGHNQLSGKIPDFLGKFRALDTLDLSSNRFSGTVPASFKNLTKIFNLNLANNLLVDPFPE MNVKGIESLDLSNNMFHLNQIPKWVTSSPIIFSLKLARCGIKMKLDDWKPAETYFYDFIDLSGNEISGSAVGLVNSTEYL VGFWGSGNKLKFDFERLKFGERFKYLDLSHNLVFGKVPKSVAGLEKLNVSYNHLCGEIPKTKFPASAFVGNDCLCGAPLQ PCKKA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 13 | 13 | - | – | |
| Phobius | 1 | 30 | 30 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 30 | 30 | - | – | |
| SignalP_EUK | 1 | 30 | 30 | - | – | |
| TMHMM | 7 | 26 | 20 | - | – | |
| PANTHER | 13 | 481 | 469 | 6.5E-217 | – | |
| PANTHER | 13 | 481 | 469 | 6.5E-217 | – | |
| Phobius | 14 | 26 | 13 | - | – | |
| Phobius | 27 | 30 | 4 | - | – | |
| Gene3D | 28 | 200 | 173 | 3.6E-45 | ||
| Phobius | 31 | 485 | 455 | - | – | |
| Pfam | 36 | 73 | 38 | 1.5E-12 | ||
| SUPERFAMILY | 63 | 444 | 382 | 1.39E-57 | – | |
| SMART | 132 | 156 | 25 | 36.0 | ||
| Pfam | 158 | 217 | 60 | 3.0E-12 | ||
| SMART | 180 | 203 | 24 | 160.0 | ||
| SMART | 204 | 227 | 24 | 31.0 | ||
| Gene3D | 206 | 485 | 280 | 8.2E-64 | ||
| Pfam | 254 | 314 | 61 | 5.1E-8 | ||
| SMART | 277 | 300 | 24 | 99.0 | ||
| SMART | 441 | 470 | 30 | 160.0 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0329500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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