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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0341600 |
| Transcript ID | LotjaGi3g1v0341600.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 26S protease regulatory subunit, putative; TAIR: AT5G19990.1 regulatory particle triple-A ATPase 6A; Swiss-Prot: sp|Q9C5U3|PRS8A_ARATH 26S protease regulatory subunit 8 homolog A; TrEMBL-Plants: tr|A0A0B2S409|A0A0B2S409_GLYSO 26S protease regulatory subunit 8 like A; Found in the gene: LotjaGi3g1v0341600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:71638303..71643892) extracted from Lotus japonicus Gifu genome v1.2.
AGAATAGCTTTGCCTTTGGGGTTTCCTTTGTTTTCCTCATCGACCTATCTAAAGAGTAAAGGGCTTCGTCGAACAAAGTT GAAATCTCAAGAGATCCAATCGAATCGAATCGACTCATGGCTACAGTCGGAGTAGAATTGAACCACGCGGCGGAGGCGGC ACCGGAGGAGAATTGCTCCGCCAAACCTACCAAACAGGGCGAGGGTCTCCGTCACTACTACTCTCTCCACATCCATGAAC TTCAGCTCCTCCTCCGCCAGAAAACCCATAACCTCAACCGTCTCGAGGCTCAGAGAAACGAGCTCAATTCTCGAGGTTTC TTCCTTTTTCCCTAACCCTAATTCTTTATTTTAAACATGTGATTTGAAAATTTGAAGATTTTTGTGTCGGTGGACATTTC AAATTCCCTTTTACTGAATGGCGTTTCAAATTAGAATGTTTGAAGACTGATTCTTGAGATGATTGTCAACTCAGTTGAGA GTTATTAGTGCCTTTTGTGGTTTTGTCAAATCTACATGACTGCATAATTATTATATTGTTTTATTAATTCATTTTGAGAG GATGAGAAATTAACTTAGTCTTCGAATTTCGAGCTTACATTTGATTAGGAAGAATGAATTGCATGTAATTTTGTTTTTAA TGGTGATTTGGTTGCTTTCAAACAAAACTAGCACTGCAAGCAAGTGCAGATAGGGATGTCATGCCTGGTATGTTATGGAT GAAGACATTGTAAATGATTTTGGGAAATATAGGGTCCGGCTCCTTGAAAGTGGTAAAGTAAGCATCACAACCACTGATTG AGTTATTTTATTGACTTTTCCAAAGTCGGTAATTACTATTAATGGTTATGATGCTTACTTCTAAAGTGCGTCCACTCACT TTAGAGGAGCCAAATCCAGAAATATATGTGTATGATGTGCTTTTAGTGTTATACAATGTGCCGTCTTTCTTGACAATGAT TTCTGCAATCTGTGGTAGATAGCCTGCAGATGTAGGAAAGGCTTTCAATTTAATTGCAAAGGCACAGACCTTCTCAGTTT ACATGTTTTTTTATTTGTTTGTTGTCTTCAATTTGCCTGTGATATGTTCTTAACAATTATACCAATTTGTGCAGTGAGGA TGCTCCGAGAAGAACTGCAGCTTCTACAGGAGCCTGGCTCATATGTTGGTGAAGTTGTTAAAGTTATGGGCAAGAACAAA GTTTTGGTCAAGGTTTGTTCATGCTCCATGCCTCCATGCTCATTTCCTTTTGATCCGTTTTGTTAGCTGTTACATACCAT CATATCTGCTTGCTTGACTTCATATCTCTGTATTTCCCTTTGGGATAGACAATCAACATAAATTTAATTTGAACTTATAT ACTTCGAAATTCGAATCATTAGTTTATGTGGTCCTGTGAAAACTTTTCATTTACTCCAAGCGGAATACTATTTGAAGGAC TCATCTGATTGGATGATTTCAGGGTTTCTTTTCTTTTTATAGACCTTATAAGTTGATCTAAATATTTATGAATTTGGAGT TATACATTCTGGTCTTTCTTACTTACTTGCAAAGTGCAAACATTTTCTGTACTTGAAGAGCATTGAGTATTGGATGCGCG TTGAGATGTTTTTTTTTCTCCCCTTTTTTACAAGATAATATATCACTCTAATGATGCTTCAAACTACAGCTCATTCTTTA TCTTCCCCTATCACTCACAAACTCATGACTTAATGTAATGGTTGTTTATATTTATTTGTGCATGAGATTAATAAACCATG TTCAAAACCAAGGTGAGGTGCTGATTTTTCATTTGCTTATCTCCAGGTCCATCCAGAAGGGAAATATGTTGTTGATATTG ATAAGAACATTGACATTACAAAGATTACACCATCAACTAGGGTTGCGCTCCGCAATGACAGTTATGTGCTTCATTTAGTT CTGCCCAGCAAAGTTGATCCATTGGTCAATCTGATGAAAGTTGAGAAAGTTCCTGATTCTACATATGATATGATTGGTGG TTTAGACCAGCAAATCAAAGAAATAAAAGAGGTTAGCTGCTGACATTCTTTCTATACTAGCATTTGAAGTTCGTTATTAT TGTGTTTGAGAAGTATCTATCTATCCATCTATCTGTGCACGCATCACTGTTCTCTGTTATTTTCTATGTATATGTATGCT TTAGTGTAGTATCATATGTTAGAAAAAACATTGTTCTTTAGCCTCATGTTTGTCATAAATTTTACAGGTCATTGAGCTAC CAATTAAACATCCTGAGCTGTTTGAAAGTCTTGGAATAGCACAACCGAAGGTAGTATCTCATTCTGAGTTATGGCTAGAT TTTCCATCCTTCTATCATATGTATCCTTGATTTTGATTTATCTGTTTATTGACATTCTTTCCTGTCTCCCAGGGTGTTCT GCTCTATGGGCCACCTGGTACAGGAAAAACATTGTTGGCTAGGGCAGTTGCACACCATACTGATTGTACATTCATCAGGG TGTCTGGATCTGAATTAGTTCAGAAATACATTGGAGAAGGTTCTAGAATGGTCAGGGAACTTTTCGTTATGGCAAGGTAT GTTCTCTTTACTCAGCTTCTTCCACTCATTATCTGTTGTGTTGCCCTTATCCAAATTTAAGAGGATAGAAAAAGGATATC TTGGCCCCATGGTTGGGGGTTGAAGATTTTTTCTTAGAGTGCTCATGTTAACTTTACTCAGGGTGAAAATATATCTATAG TTCCTTAGATTTTGATTTTCAAATTTGAATCTAGTGCTAGATGTATACAATGTATGATTGGAACTTGGGTGTATATTATG TTCTTTTTCCAATTTCCACATAGTGGAATTTGAGAAGACCAAGATGGACATTTTTACTCCCCTAAATATGTTATGCATAA CATTTTCACTAATTTCCAAGTTCAAATTATTTATTTAAGAATGAAATATGCTGTTTGAAGACTTGATTAAACAATATGAT ACTTATTATCATGGAATCTACTCTTTCACAGGGAGCATGCACCATCAATTATCTTCATGGACGAAATTGACAGTATCGGA TCTGCTCGGATGGAGTCTGGAAGTGGCAATGGTGATAGTGAAGTGCAACGTACTATGTTGGAACTTCTCAACCAGTTGGA TGGATTTGAAGCTTCAAATAAGATCAAGGTAATACATGTTGCTTCACATCGAAATTGTCCTATTGTAGTTTATTGAAGGG AATTTTAAAGATAGCATGATTCCACTGCTATAAATCAAAATCTACACTGTAATAGGTAGATAGGTGTTGTTCATTTTACC TGACTCATTTGATATATAAGTTCACAAGTTTTTGGGGAATTTCTAAAGAGAAATATGTAAATATAGGTTTTGATGGCCAC GAATCGGATTGATATCCTGGATCAAGCACTCCTTAGACCTGGACGAATTGATAGAAAGATTGAATTTCCAAACCCTAATG AAGAGGTTTGCATCTTTGTTTTCATGTTATCCTTTGATTTATTTGTACTGGGAAAGAAAATGCACCTCTGCATTTGTTAC TAATAATCCTGAAAATCGCTGTATTTGTATACAGTCTCGGCAGGATATTTTGAAAATCCATTCTAGAAGAATGAATTTAA TGCGCGGTATTGATTTGAAGAAGATTGCTGAGAAGATGAATGGCGCATCTGGCGCAGAGCTTAAGGTACGCTTCACTTTA ATTGCATTGCGTTTTGGTTTCCTGCTGCTCTATAGTAAACTGTACTGGTTGAAACAATGCGGTAGATTTACTGAACTCCT TTGCTATAGTGAGTTACTACTGTGGTTCACTTATTGGAATAACGCGTGCATTAATTATCATTTAATATTTCCTTTACTTC CTGCTAATCTTGAGTATCCATGTGTTCACTTTGTTTGATGGATAAAGGTTCAGAGAAATTTTGCAATGTAATGAATCGGA ATAGAAGTTTGAACAAACATTAACATGTATATGTCTTGTTGTTCATGATATATCTCAAGTCATGAGGCAAATATAGTGTC TTGATAGTAAAAAGCATGAAAAAAATTAGCTCAGAAACTGCGTGATTTAGATATATATTCATTTTAAAGTGGAGAGTAAA TAAAACTACAAGAAAGAAGCAGTATGGACTATGGACTGTGATTGAGATGCAGCAAATGACTTGGAGTGAACACTTAATAT GCACTCTTCGGCCGGCGCTTGAGAACTTGTTTGTGCTTACCATGAAAATGTTAGGAATGGCTTGGTTAAATGGAGTCTCT GCATCATGAGACCTTTATTATCAGAGAACAGTAGTGGTGCATTGACCTTGTTCAGCGGGTGTTATCTCTCATCAACAGTG CCAATGAGTATAGCATTCTCAGATGGACTTGTTAACTCAAGGAAAGTTCGAAAGTTTGAGTTTAAACAAAATATTATGTT GTAATTCGGGTGTCTGCATAAAAATAAAATAATAGAGCTAATTGTAACTTGATGGGGTATTGACTTTTATGAAACAGTGA GATGTTATTACAAAATGATGAGTGAGTCCATTATGTATATGCAAATTCTGTAATTATGGAAGAATTATGTCAGAATGTTG TATGATTTAAGTCATAAATCATAATGTTTGCAGTGACTAGTGAATTGAAAGTATTCATGCTAATAATTTGTTTGCTAATG TTGCTAGTTCAATATATTGCATTATTTCAAGTGTGTCCTTTTATGCAGGCTGTGTGCACAGAAGCTGGAATGTTTGCTCT AAGAGAGAGGAGGGTTCATGTGACGCAGGAGGACTTTGAGATGGCCGTGGCAAAGGTCATGAAAAAGGAGACGGAGAAAA ACATGTCATTGCGGAAGTTGTGGAAATGATTTGTATTTCATGTTTCTTTCTTGTGCACATTATCCTGCAAAGATGAGAAA AGAACACACCTTAGGGTTGTTTCAATTTACAGTCACGCTGGCTTTCATTTTGCTTATGTTGACCAAGTTATGTACCAAAT CATGTTTCTTTCCTGTTTTTTTCCTTGGCTGTCTCTTCAGAATGTACTCTAGATATATAGATCATATTTTATTTGAGAGA TTATCTATCTGGGGAAAGAAGATAACTAAAGTCTACTTGCTTGGGAAGTTTTTTTATTTTTATTACCTTTATTGTAAAAT CTACAGTAGCTTCCATGTTTTTTTAGTAGCTTCATTGTAGACCATCTTTTTTTCCCCTCAACAAATTGAAAACTTGCGAT TGAGCTTCACACCCATTTAGGTATACCTACTTTATCGGTGTTGTCTGCGGTAGTTCACTTGGTAGTTCACTCAAATCAAT GAGCCACGATGGTTTAGTTTATTTATATTGTTAGATATCATACTTAGATAAAGGAGAAAAGATAAAGAGACAATAAAGAG ACAAGGGCTCTTACCACTTAAAAAATGGAATGAACCATATTGGTTCACTTCACGCTGCCTACCTTGTGCTTTAAAAGTAA GAAGGCTAAAGATATCAAATTCCAATGAGTTTTTGCAAGAGAAATGAGAATATATTAGGTATAATACAAGGTTTTTCACA AATCTTTTCTGAAAATACATTTTTTCTTTATTATTGATACAATTACTTTTAGAGTTTCAATTAGTCTGAA
CDS sequence (LotjaGi3g1v0341600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTACAGTCGGAGTAGAATTGAACCACGCGGCGGAGGCGGCACCGGAGGAGAATTGCTCCGCCAAACCTACCAAACA GGGCGAGGGTCTCCGTCACTACTACTCTCTCCACATCCATGAACTTCAGCTCCTCCTCCGCCAGAAAACCCATAACCTCA ACCGTCTCGAGGCTCAGAGAAACGAGCTCAATTCTCGAGTGAGGATGCTCCGAGAAGAACTGCAGCTTCTACAGGAGCCT GGCTCATATGTTGGTGAAGTTGTTAAAGTTATGGGCAAGAACAAAGTTTTGGTCAAGGTCCATCCAGAAGGGAAATATGT TGTTGATATTGATAAGAACATTGACATTACAAAGATTACACCATCAACTAGGGTTGCGCTCCGCAATGACAGTTATGTGC TTCATTTAGTTCTGCCCAGCAAAGTTGATCCATTGGTCAATCTGATGAAAGTTGAGAAAGTTCCTGATTCTACATATGAT ATGATTGGTGGTTTAGACCAGCAAATCAAAGAAATAAAAGAGGTCATTGAGCTACCAATTAAACATCCTGAGCTGTTTGA AAGTCTTGGAATAGCACAACCGAAGGGTGTTCTGCTCTATGGGCCACCTGGTACAGGAAAAACATTGTTGGCTAGGGCAG TTGCACACCATACTGATTGTACATTCATCAGGGTGTCTGGATCTGAATTAGTTCAGAAATACATTGGAGAAGGTTCTAGA ATGGTCAGGGAACTTTTCGTTATGGCAAGGGAGCATGCACCATCAATTATCTTCATGGACGAAATTGACAGTATCGGATC TGCTCGGATGGAGTCTGGAAGTGGCAATGGTGATAGTGAAGTGCAACGTACTATGTTGGAACTTCTCAACCAGTTGGATG GATTTGAAGCTTCAAATAAGATCAAGGTTTTGATGGCCACGAATCGGATTGATATCCTGGATCAAGCACTCCTTAGACCT GGACGAATTGATAGAAAGATTGAATTTCCAAACCCTAATGAAGAGTCTCGGCAGGATATTTTGAAAATCCATTCTAGAAG AATGAATTTAATGCGCGGTATTGATTTGAAGAAGATTGCTGAGAAGATGAATGGCGCATCTGGCGCAGAGCTTAAGGCTG TGTGCACAGAAGCTGGAATGTTTGCTCTAAGAGAGAGGAGGGTTCATGTGACGCAGGAGGACTTTGAGATGGCCGTGGCA AAGGTCATGAAAAAGGAGACGGAGAAAAACATGTCATTGCGGAAGTTGTGGAAATGA
Protein sequence (LotjaGi3g1v0341600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATVGVELNHAAEAAPEENCSAKPTKQGEGLRHYYSLHIHELQLLLRQKTHNLNRLEAQRNELNSRVRMLREELQLLQEP GSYVGEVVKVMGKNKVLVKVHPEGKYVVDIDKNIDITKITPSTRVALRNDSYVLHLVLPSKVDPLVNLMKVEKVPDSTYD MIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSR MVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRP GRIDRKIEFPNPNEESRQDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRVHVTQEDFEMAVA KVMKKETEKNMSLRKLWK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 22 | 415 | 394 | 6.2E-253 | – | |
| PANTHER | 22 | 415 | 394 | 6.2E-253 | – | |
| Coils | 39 | 73 | 35 | - | – | |
| TIGRFAM | 41 | 403 | 363 | 1.9E-139 | ||
| Gene3D | 45 | 149 | 105 | 5.4E-38 | – | |
| Pfam | 84 | 139 | 56 | 2.1E-7 | ||
| Gene3D | 150 | 331 | 182 | 5.1E-68 | – | |
| SUPERFAMILY | 155 | 407 | 253 | 6.63E-71 | ||
| CDD | 163 | 330 | 168 | 8.09391E-27 | – | |
| SMART | 193 | 333 | 141 | 4.2E-23 | ||
| Pfam | 197 | 330 | 134 | 4.7E-43 | ||
| ProSitePatterns | 301 | 319 | 19 | - | ||
| Gene3D | 332 | 404 | 73 | 2.9E-26 | – | |
| Pfam | 354 | 396 | 43 | 2.7E-15 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Cytoplasm | All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. | ||
| Molecular function | Hydrolase activity | Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. | ||
| Biological process | Protein catabolic process | The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds. |
Expression pattern of LotjaGi3g1v0341600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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