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LotjaGi3g1v0341600.3

Overview

Field Value
Gene ID LotjaGi3g1v0341600
Transcript ID LotjaGi3g1v0341600.3
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description 26S protease regulatory subunit, putative; TAIR: AT5G19990.1 regulatory particle triple-A ATPase 6A; Swiss-Prot: sp|Q9C5U3|PRS8A_ARATH 26S protease regulatory subunit 8 homolog A; TrEMBL-Plants: tr|A0A072UQA3|A0A072UQA3_MEDTR 26S proteasome regulatory particle triple-A ATPase protein; Found in the gene: LotjaGi3g1v0341600
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:71639064..71643077) extracted from Lotus japonicus Gifu genome v1.2.

TTTTCCAAAGTCGGTAATTACTATTAATGGTTATGATGCTTACTTCTAAAGTGCGTCCACTCACTTTAGAGGAGCCAAAT CCAGAAATATATGTGTATGATGTGCTTTTAGTGTTATACAATGTGCCGTCTTTCTTGACAATGATTTCTGCAATCTGTGG TAGATAGCCTGCAGATGTAGGAAAGGCTTTCAATTTAATTGCAAAGGCACAGACCTTCTCAGTTTACATGTTTTTTTATT TGTTTGTTGTCTTCAATTTGCCTGTGATATGTTCTTAACAATTATACCAATTTGTGCAGTGAGGATGCTCCGAGAAGAAC TGCAGCTTCTACAGGAGCCTGGCTCATATGTTGGTGAAGTTGTTAAAGTTATGGGCAAGAACAAAGTTTTGGTCAAGGTT TGTTCATGCTCCATGCCTCCATGCTCATTTCCTTTTGATCCGTTTTGTTAGCTGTTACATACCATCATATCTGCTTGCTT GACTTCATATCTCTGTATTTCCCTTTGGGATAGACAATCAACATAAATTTAATTTGAACTTATATACTTCGAAATTCGAA TCATTAGTTTATGTGGTCCTGTGAAAACTTTTCATTTACTCCAAGCGGAATACTATTTGAAGGACTCATCTGATTGGATG ATTTCAGGGTTTCTTTTCTTTTTATAGACCTTATAAGTTGATCTAAATATTTATGAATTTGGAGTTATACATTCTGGTCT TTCTTACTTACTTGCAAAGTGCAAACATTTTCTGTACTTGAAGAGCATTGAGTATTGGATGCGCGTTGAGATGTTTTTTT TTCTCCCCTTTTTTACAAGATAATATATCACTCTAATGATGCTTCAAACTACAGCTCATTCTTTATCTTCCCCTATCACT CACAAACTCATGACTTAATGTAATGGTTGTTTATATTTATTTGTGCATGAGATTAATAAACCATGTTCAAAACCAAGGTG AGGTGCTGATTTTTCATTTGCTTATCTCCAGGTCCATCCAGAAGGGAAATATGTTGTTGATATTGATAAGAACATTGACA TTACAAAGATTACACCATCAACTAGGGTTGCGCTCCGCAATGACAGTTATGTGCTTCATTTAGTTCTGCCCAGCAAAGTT GATCCATTGGTCAATCTGATGAAAGTTGAGAAAGTTCCTGATTCTACATATGATATGATTGGTGGTTTAGACCAGCAAAT CAAAGAAATAAAAGAGGTTAGCTGCTGACATTCTTTCTATACTAGCATTTGAAGTTCGTTATTATTGTGTTTGAGAAGTA TCTATCTATCCATCTATCTGTGCACGCATCACTGTTCTCTGTTATTTTCTATGTATATGTATGCTTTAGTGTAGTATCAT ATGTTAGAAAAAACATTGTTCTTTAGCCTCATGTTTGTCATAAATTTTACAGGTCATTGAGCTACCAATTAAACATCCTG AGCTGTTTGAAAGTCTTGGAATAGCACAACCGAAGGTAGTATCTCATTCTGAGTTATGGCTAGATTTTCCATCCTTCTAT CATATGTATCCTTGATTTTGATTTATCTGTTTATTGACATTCTTTCCTGTCTCCCAGGGTGTTCTGCTCTATGGGCCACC TGGTACAGGAAAAACATTGTTGGCTAGGGCAGTTGCACACCATACTGATTGTACATTCATCAGGGTGTCTGGATCTGAAT TAGTTCAGAAATACATTGGAGAAGGTTCTAGAATGGTCAGGGAACTTTTCGTTATGGCAAGGTATGTTCTCTTTACTCAG CTTCTTCCACTCATTATCTGTTGTGTTGCCCTTATCCAAATTTAAGAGGATAGAAAAAGGATATCTTGGCCCCATGGTTG GGGGTTGAAGATTTTTTCTTAGAGTGCTCATGTTAACTTTACTCAGGGTGAAAATATATCTATAGTTCCTTAGATTTTGA TTTTCAAATTTGAATCTAGTGCTAGATGTATACAATGTATGATTGGAACTTGGGTGTATATTATGTTCTTTTTCCAATTT CCACATAGTGGAATTTGAGAAGACCAAGATGGACATTTTTACTCCCCTAAATATGTTATGCATAACATTTTCACTAATTT CCAAGTTCAAATTATTTATTTAAGAATGAAATATGCTGTTTGAAGACTTGATTAAACAATATGATACTTATTATCATGGA ATCTACTCTTTCACAGGGAGCATGCACCATCAATTATCTTCATGGACGAAATTGACAGTATCGGATCTGCTCGGATGGAG TCTGGAAGTGGCAATGGTGATAGTGAAGTGCAACGTACTATGTTGGAACTTCTCAACCAGTTGGATGGATTTGAAGCTTC AAATAAGATCAAGGTAATACATGTTGCTTCACATCGAAATTGTCCTATTGTAGTTTATTGAAGGGAATTTTAAAGATAGC ATGATTCCACTGCTATAAATCAAAATCTACACTGTAATAGGTAGATAGGTGTTGTTCATTTTACCTGACTCATTTGATAT ATAAGTTCACAAGTTTTTGGGGAATTTCTAAAGAGAAATATGTAAATATAGGTTTTGATGGCCACGAATCGGATTGATAT CCTGGATCAAGCACTCCTTAGACCTGGACGAATTGATAGAAAGATTGAATTTCCAAACCCTAATGAAGAGGTTTGCATCT TTGTTTTCATGTTATCCTTTGATTTATTTGTACTGGGAAAGAAAATGCACCTCTGCATTTGTTACTAATAATCCTGAAAA TCGCTGTATTTGTATACAGTCTCGGCAGGATATTTTGAAAATCCATTCTAGAAGAATGAATTTAATGCGCGGTATTGATT TGAAGAAGATTGCTGAGAAGATGAATGGCGCATCTGGCGCAGAGCTTAAGGTACGCTTCACTTTAATTGCATTGCGTTTT GGTTTCCTGCTGCTCTATAGTAAACTGTACTGGTTGAAACAATGCGGTAGATTTACTGAACTCCTTTGCTATAGTGAGTT ACTACTGTGGTTCACTTATTGGAATAACGCGTGCATTAATTATCATTTAATATTTCCTTTACTTCCTGCTAATCTTGAGT ATCCATGTGTTCACTTTGTTTGATGGATAAAGGTTCAGAGAAATTTTGCAATGTAATGAATCGGAATAGAAGTTTGAACA AACATTAACATGTATATGTCTTGTTGTTCATGATATATCTCAAGTCATGAGGCAAATATAGTGTCTTGATAGTAAAAAGC ATGAAAAAAATTAGCTCAGAAACTGCGTGATTTAGATATATATTCATTTTAAAGTGGAGAGTAAATAAAACTACAAGAAA GAAGCAGTATGGACTATGGACTGTGATTGAGATGCAGCAAATGACTTGGAGTGAACACTTAATATGCACTCTTCGGCCGG CGCTTGAGAACTTGTTTGTGCTTACCATGAAAATGTTAGGAATGGCTTGGTTAAATGGAGTCTCTGCATCATGAGACCTT TATTATCAGAGAACAGTAGTGGTGCATTGACCTTGTTCAGCGGGTGTTATCTCTCATCAACAGTGCCAATGAGTATAGCA TTCTCAGATGGACTTGTTAACTCAAGGAAAGTTCGAAAGTTTGAGTTTAAACAAAATATTATGTTGTAATTCGGGTGTCT GCATAAAAATAAAATAATAGAGCTAATTGTAACTTGATGGGGTATTGACTTTTATGAAACAGTGAGATGTTATTACAAAA TGATGAGTGAGTCCATTATGTATATGCAAATTCTGTAATTATGGAAGAATTATGTCAGAATGTTGTATGATTTAAGTCAT AAATCATAATGTTTGCAGTGACTAGTGAATTGAAAGTATTCATGCTAATAATTTGTTTGCTAATGTTGCTAGTTCAATAT ATTGCATTATTTCAAGTGTGTCCTTTTATGCAGGCTGTGTGCACAGAAGCTGGAATGTTTGCTCTAAGAGAGAGGAGGGT TCATGTGACGCAGGAGGACTTTGAGATGGCCGTGGCAAAGGTCATGAAAAAGGAGACGGAGAAAAACATGTCATTGCGGA AGTTGTGGAAATGA
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0341600.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCTCCGAGAAGAACTGCAGCTTCTACAGGAGCCTGGCTCATATGTTGGTGAAGTTGTTAAAGTTATGGGCAAGAACAA AGTTTTGGTCAAGGTCCATCCAGAAGGGAAATATGTTGTTGATATTGATAAGAACATTGACATTACAAAGATTACACCAT CAACTAGGGTTGCGCTCCGCAATGACAGTTATGTGCTTCATTTAGTTCTGCCCAGCAAAGTTGATCCATTGGTCAATCTG ATGAAAGTTGAGAAAGTTCCTGATTCTACATATGATATGATTGGTGGTTTAGACCAGCAAATCAAAGAAATAAAAGAGGT CATTGAGCTACCAATTAAACATCCTGAGCTGTTTGAAAGTCTTGGAATAGCACAACCGAAGGGTGTTCTGCTCTATGGGC CACCTGGTACAGGAAAAACATTGTTGGCTAGGGCAGTTGCACACCATACTGATTGTACATTCATCAGGGTGTCTGGATCT GAATTAGTTCAGAAATACATTGGAGAAGGTTCTAGAATGGTCAGGGAACTTTTCGTTATGGCAAGGGAGCATGCACCATC AATTATCTTCATGGACGAAATTGACAGTATCGGATCTGCTCGGATGGAGTCTGGAAGTGGCAATGGTGATAGTGAAGTGC AACGTACTATGTTGGAACTTCTCAACCAGTTGGATGGATTTGAAGCTTCAAATAAGATCAAGGTTTTGATGGCCACGAAT CGGATTGATATCCTGGATCAAGCACTCCTTAGACCTGGACGAATTGATAGAAAGATTGAATTTCCAAACCCTAATGAAGA GTCTCGGCAGGATATTTTGAAAATCCATTCTAGAAGAATGAATTTAATGCGCGGTATTGATTTGAAGAAGATTGCTGAGA AGATGAATGGCGCATCTGGCGCAGAGCTTAAGGCTGTGTGCACAGAAGCTGGAATGTTTGCTCTAAGAGAGAGGAGGGTT CATGTGACGCAGGAGGACTTTGAGATGGCCGTGGCAAAGGTCATGAAAAAGGAGACGGAGAAAAACATGTCATTGCGGAA GTTGTGGAAATGA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0341600.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MLREELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVDIDKNIDITKITPSTRVALRNDSYVLHLVLPSKVDPLVNL MKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGS ELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATN RIDILDQALLRPGRIDRKIEFPNPNEESRQDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRV HVTQEDFEMAVAKVMKKETEKNMSLRKLWK
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR23073
1 347 347 6.8E-234 –
PANTHER
PTHR23073:SF68
1 347 347 6.8E-234 –
Gene3D
G3DSA:2.40.50.140
1 81 81 5.3E-30 –
TIGRFAM
TIGR01242
2 335 334 6.9E-136
IPR005937
Pfam
PF16450
16 71 56 1.6E-7
IPR032501
Gene3D
G3DSA:3.40.50.300
82 263 182 3.3E-68 –
SUPERFAMILY
SSF52540
87 339 253 3.92E-71
IPR027417
CDD
cd00009
95 262 168 6.7469E-27 –
SMART
SM00382
125 265 141 4.2E-23
IPR003593
Pfam
PF00004
129 262 134 3.2E-43
IPR003959
ProSitePatterns
PS00674
233 251 19 -
IPR003960
Gene3D
G3DSA:1.10.8.60
264 336 73 2.2E-26 –
Pfam
PF17862
286 328 43 2.1E-15
IPR041569

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of
GO:0005737
Cellular component Cytoplasm All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
Subterm of
GO:0016787
Molecular function Hydrolase activity Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
Subterm of
GO:0030163
Biological process Protein catabolic process The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0341600.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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