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LotjaGi3g1v0361300.3

Overview

Field Value
Gene ID LotjaGi3g1v0361300
Transcript ID LotjaGi3g1v0361300.3
Related isoforms 5
Lotus japonicus genome version Gifu v1.2
Description Katanin p60 ATPase-containing subunit A1; TAIR: AT1G80350.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|Q9SEX2|KTNA1_ARATH Katanin p60 ATPase-containing subunit A1; TrEMBL-Plants: tr|A0A151SGM8|A0A151SGM8_CAJCA Katanin p60 ATPase-containing subunit A1; Found in the gene: LotjaGi3g1v0361300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:74448081..74449739) extracted from Lotus japonicus Gifu genome v1.2.

TTACAAAATTATGATTGCAAAATAAGTTCATGCTTTTTCTGTTACATCAACCTTGTACCACACTTTGAATTTTTAATTCA AGAACTGCTTATTTGATTGGCTTATTCTTATAGCAAGCTCTAATCAAATCCATGCATTTGAATCTCAGTAAATCAAATTG GTCTTGAGCTCATTATTTCTGTTCATGCAGGGAATTAGGAGACCATGGAAAGGTGTCCTCATGTTTGGTCCTCCAGGAAC TGGGAAGACACTTCTTGCTAAAGCAGTTGCTACTGAATGTGGGACCACTTTCTTTAATGTTTCTTCTGCAACTTTGGCTT CTAAATGGCGTGGAGAGAGTGAGCGCATGGTGCGGTGTTTGTTTGATCTTGCAAGAGCATATGCACCAAGTACAATTTTC ATTGACGAAATTGATTCTCTGTGCAATTCTAGGGGGTAAGCCTTTGTTGTTACATCCATTGCATGTAGTAGTGTTTGGAA CCTGTTTATGTTTCCCTAAAACAATCTTTCATTTAATTCTCTTTTTCTGTGGCTTGTACATTCCTAGATTGTGTCTGGTT CACAAAGTAATGGAGATATAATGTTTTTCATCTATTCTGACCTGCTGAGTTAACTCTTACTTTGCACCATCTCTTGGAGG TATGTTGAAGTCTGATTGAATGGACTTTTGTTTCCTCAGGGCATCTGGAGAGCACGAATCATCCAGAAGGGTGAAATCTG AACTTCTAGTTCAGGTTGATGGTGTAAGCAATACTGCCACAAATGAAGATGGAAGCCGTAAAATAGTAATGGTCTTGGCA GCTACTAACTTCCCATGGGACATAGATGAGGCACTGAGGTTTGTTTTTGTTTTTCTATGTTCTTTTCTTTACAGTTTATG TTGTAAGTGATTAGTTATCTGTGCCAGATATCTCTTTTAATATACTAGCCTAAACTTTCTGATCCAATTTAATGTTAATG CAATGCAGGAGAAGGCTGGAAAAGCGTATATATATTCCTCTTCCAAATTTTGAGAGTCGTAAAGAGCTGATCCGAATTAA TTTGAAGACTGTTGAGGCAAGTTGTGATGTTTTGTTACTGTTTTGACTCTTGGTTATGTATGATTTTGACCCTTAAAAGT TTTGCTGTGTAATAGCTATAATTGATTTCTACAACATAAATTATGTTAACTTGAGCTTTATCTATTAGAATCTATGTTAC CCCCAAAAGAAAAGGAAAAGAGCATTTAACAAGAAATGATATTGTCTTGTGAATTAATTTTTTTATTGGAGGTGTTCAGT CACTGAACATACTGTGAGACTAGTATATAGAAAAGGCAGCAGATTCAAGGTTGCTAGAACTTGATTATTATAGCTGATGG TGCTTGTCTTGTTTCAGGTGGCCCCTGATGTCAATATAGATGAAGTGGCTCGCCGGACAGATGGCTATAGTGGAGATGAT TTGACAAATGTCTGTCGTGATGCTTCCTTGAATGGTATGAGACGTAAAATAGCAGGAAAGACTCGTGATGAAATCAAGAA CATGTCGAAGGATGATATTTCAAAGGATCCTGTTGCCATGTGCGATTTTGAAGAAGCTTTGGTAAAGGTCCAACGAAGTG TTTCTCAGGCTGACATTGAACGCCATGAGAAGTGGTTTCATGAATTTGGATCAGCTTAA
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0361300.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCAGGGAATTAGGAGACCATGGAAAGGTGTCCTCATGTTTGGTCCTCCAGGAACTGGGAAGACACTTCTTGCTAAAGC AGTTGCTACTGAATGTGGGACCACTTTCTTTAATGTTTCTTCTGCAACTTTGGCTTCTAAATGGCGTGGAGAGAGTGAGC GCATGGTGCGGTGTTTGTTTGATCTTGCAAGAGCATATGCACCAAGTACAATTTTCATTGACGAAATTGATTCTCTGTGC AATTCTAGGGGGGCATCTGGAGAGCACGAATCATCCAGAAGGGTGAAATCTGAACTTCTAGTTCAGGTTGATGGTGTAAG CAATACTGCCACAAATGAAGATGGAAGCCGTAAAATAGTAATGGTCTTGGCAGCTACTAACTTCCCATGGGACATAGATG AGGCACTGAGGAGAAGGCTGGAAAAGCGTATATATATTCCTCTTCCAAATTTTGAGAGTCGTAAAGAGCTGATCCGAATT AATTTGAAGACTGTTGAGGCAAGTTGTGATGTGCTTGTCTTGTTTCAGGTGGCCCCTGATGTCAATATAGATGAAGTGGC TCGCCGGACAGATGGCTATAGTGGAGATGATTTGACAAATGTCTGTCGTGATGCTTCCTTGAATGGTATGAGACGTAAAA TAGCAGGAAAGACTCGTGATGAAATCAAGAACATGTCGAAGGATGATATTTCAAAGGATCCTGTTGCCATGTGCGATTTT GAAGAAGCTTTGGTAAAGGTCCAACGAAGTGTTTCTCAGGCTGACATTGAACGCCATGAGAAGTGGTTTCATGAATTTGG ATCAGCTTAA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0361300.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLC NSRGASGEHESSRRVKSELLVQVDGVSNTATNEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIRI NLKTVEASCDVLVLFQVAPDVNIDEVARRTDGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMSKDDISKDPVAMCDF EEALVKVQRSVSQADIERHEKWFHEFGSA
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:3.40.50.300
2 262 261 1.6E-92 –
PANTHER
PTHR23074:SF19
2 268 267 8.3E-162 –
PANTHER
PTHR23074
2 268 267 8.3E-162 –
CDD
cd00009
5 148 144 2.37292E-26 –
SUPERFAMILY
SSF52540
6 266 261 6.05E-53
IPR027417
SMART
SM00382
7 150 144 5.3E-17
IPR003593
Pfam
PF00004
11 148 138 1.7E-38
IPR003959
ProSitePatterns
PS00674
120 139 20 -
IPR003960
Gene3D
G3DSA:1.10.8.60
149 247 99 1.6E-92 –
Pfam
PF17862
180 219 40 3.0E-12
IPR041569
Pfam
PF09336
222 267 46 1.8E-10
IPR015415

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0361300.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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