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LotjaGi3g1v0361300.6

Overview

Field Value
Gene ID LotjaGi3g1v0361300
Transcript ID LotjaGi3g1v0361300.6
Related isoforms 5
Lotus japonicus genome version Gifu v1.2
Description Katanin p60 ATPase-containing subunit A1; TAIR: AT1G80350.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|Q9SEX2|KTNA1_ARATH Katanin p60 ATPase-containing subunit A1; TrEMBL-Plants: tr|I1KH58|I1KH58_SOYBN Katanin p60 ATPase-containing subunit A1; Found in the gene: LotjaGi3g1v0361300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:74448081..74451660) extracted from Lotus japonicus Gifu genome v1.2.

ATGGTTGGAAGTTCGTTGGGTGGGTTGCAAGAGCACCTCAAGCTAGCCAGAGAGTACGCTCTCGAAGGACAGTATGACAC CTCCATCATCTTCTTCGATGGTGCTGTTGCTCAGATCAACAAGTACTTCTCTTTCTCCCTGTGCCTCCCATTTTTCAAAT TTTTTTTTTCTCATTTTTTCAAATTTTTCTTAGTAAAGTTCGTCACTTTTCTTCATTACCTTTCATGGGTATCAATTGTT TTTGTGCTTTGATGCAACGTATTGTCATGGTTTTTATTTATTTTTTGACATATTCATATGCAATGGATCTCGTATACCCT TTTAGAAACCAGTACTGTTGAATTACATGTCTTGATGTGAATTCAAATTTGGAGATAATGATAGTTGAGACATGGTTTTA TCAATTTGGTGTAAGCTGGATTTTTGACTAGTTCAATTGAGGTTAGATATTGTGTAGTAGTAGTGATAGCATGTTTGGAT TTATCTCTCTTTATTCAGAATCAATTTTGAAACTCAGAAGCTACTCATTTAAGTTTTGCTCCATAGTTGTATCAAGCTTT ATAATCAATTATAGAAGGATTTCCTAACATACACTAAGTTGGTTTGGTTAATTGTACCTGGCTTGCATGAAGAAGTTTCA ATCTCTTGTGATTTCAGGCACCTGAATTCTCTTGATGACCCTTTACTTCGTTCGAAATGGATGAATGTTAAGAAAGCGCT ATCTGAGGAAACAGAAGTAGTAAAGCAGTTAGATGCAGAGAGAAGTGCTTTTAAAAATAACCCCATTGGAAGACGCCCTC CCTCACCTCCGATATCTACTAAATCGTCATTCGTTTTTCAGCCATTAGATGAGTATCCTACGTCATCGAGTGGTCCGATG GATGATCCTGATGTGTGGAGGCCACCTAGTAGAGATACCAGTAGAAGACCCACAAGGCCTGGCCAAATGAGTACTCGGAA GTCAGATGGGGCATGGGCTCGAGGTGCTACTCCAAGAGGGGGTGCGACTGGGCGTGGTGCAAAGGCCGGTGCAACAAGTA AGGTTAACACAGGGACCCGAGCATCAACTACCGGAAAGAAAAGTGGTGTTTCTGGGAAGGCTGGCAAGACAGATTCAGTT GTAAGTTTCGACATCTATGAGGAAGCCTGTTGGATACTGATTTTTGTATCACATTCAATTGTTTCTAGAAGTTGTTTTTA AGGATACTTTAGTTGGTTAACTCAACTGAATATTAGTTGTGTTTGATCTTATAACACCTTAATTAAATAAGTGCTTCTAG CATTCCATAGCCATTTGTCTCCTGTGTTAGTTTTCTTTCTTTTACTCTGCCTTACATTTTTTTAATTGTTTTAATGTATA GAACTATAGACTTGGTTTCCATATTTCCGTCACATTGTGTGGCACCTTTGATTATCAGTTTACCCTACTTATGGTGTCTC TTATAGATAGTCTGAGAAACGTTTAACATCTTATATTTCCTGTTATGTCCTTACAATTAAGTATGTAATTGACAGATTAG TGATGCTGAAGAAAGTAAGTCAAAGAAGTCACAATATGAAGGTCCTGATCCTGAGTTGGCTGAAATGCTTGAAAGGGATG TGTTAGAAACCTCTCCTGGAGTGAGATGGGAGGATGTCGCTGGGCTTACTGAAGCAAAAAGGCTTCTAGAAGAAGCTGTT GTGCTTCCCCTATGGATGCCGGAATATTTCCAGGTAATGTTGAACTATTTTTTCTCTGAATTCCCATATAAATACTTGCC TAATGTTTACAATCCAGTTATATTTACTGATAATTTGGAATTGTAATGTTTATATGATACTCTGTATTTTTATCATGATA GTTAATTTTACACTCTCGTTTGACAATATGATGAAATAATCTTGCGTACAATTATGTATTTAATTTAGATGTAAGTCCTA TTTACAAAATTATGATTGCAAAATAAGTTCATGCTTTTTCTGTTACATCAACCTTGTACCACACTTTGAATTTTTAATTC AAGAACTGCTTATTTGATTGGCTTATTCTTATAGCAAGCTCTAATCAAATCCATGCATTTGAATCTCAGTAAATCAAATT GGTCTTGAGCTCATTATTTCTGTTCATGCAGGGAATTAGGAGACCATGGAAAGGTGTCCTCATGTTTGGTCCTCCAGGAA CTGGGAAGACACTTCTTGCTAAAGCAGTTGCTACTGAATGTGGGACCACTTTCTTTAATGTTTCTTCTGCAACTTTGGCT TCTAAATGGCGTGGAGAGAGTGAGCGCATGGTGCGGTGTTTGTTTGATCTTGCAAGAGCATATGCACCAAGTACAATTTT CATTGACGAAATTGATTCTCTGTGCAATTCTAGGGGGTAAGCCTTTGTTGTTACATCCATTGCATGTAGTAGTGTTTGGA ACCTGTTTATGTTTCCCTAAAACAATCTTTCATTTAATTCTCTTTTTCTGTGGCTTGTACATTCCTAGATTGTGTCTGGT TCACAAAGTAATGGAGATATAATGTTTTTCATCTATTCTGACCTGCTGAGTTAACTCTTACTTTGCACCATCTCTTGGAG GTATGTTGAAGTCTGATTGAATGGACTTTTGTTTCCTCAGGGCATCTGGAGAGCACGAATCATCCAGAAGGGTGAAATCT GAACTTCTAGTTCAGGTTGATGGTGTAAGCAATACTGCCACAAATGAAGATGGAAGCCGTAAAATAGTAATGGTCTTGGC AGCTACTAACTTCCCATGGGACATAGATGAGGCACTGAGGTTTGTTTTTGTTTTTCTATGTTCTTTTCTTTACAGTTTAT GTTGTAAGTGATTAGTTATCTGTGCCAGATATCTCTTTTAATATACTAGCCTAAACTTTCTGATCCAATTTAATGTTAAT GCAATGCAGGAGAAGGCTGGAAAAGCGTATATATATTCCTCTTCCAAATTTTGAGAGTCGTAAAGAGCTGATCCGAATTA ATTTGAAGACTGTTGAGGCAAGTTGTGATGTTTTGTTACTGTTTTGACTCTTGGTTATGTATGATTTTGACCCTTAAAAG TTTTGCTGTGTAATAGCTATAATTGATTTCTACAACATAAATTATGTTAACTTGAGCTTTATCTATTAGAATCTATGTTA CCCCCAAAAGAAAAGGAAAAGAGCATTTAACAAGAAATGATATTGTCTTGTGAATTAATTTTTTTATTGGAGGTGTTCAG TCACTGAACATACTGTGAGACTAGTATATAGAAAAGGCAGCAGATTCAAGGTTGCTAGAACTTGATTATTATAGCTGATG GTGCTTGTCTTGTTTCAGGTGGCCCCTGATGTCAATATAGATGAAGTGGCTCGCCGGACAGATGGCTATAGTGGAGATGA TTTGACAAATGTCTGTCGTGATGCTTCCTTGAATGGTATGAGACGTAAAATAGCAGGAAAGACTCGTGATGAAATCAAGA ACATGTCGAAGGATGATATTTCAAAGGATCCTGTTGCCATGTGCGATTTTGAAGAAGCTTTGGTAAAGGTCCAACGAAGT GTTTCTCAGGCTGACATTGAACGCCATGAGAAGTGGTTTCATGAATTTGGATCAGCTTAA
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0361300.6) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGGGCATGGGCTCGAGGTGCTACTCCAAGAGGGGGTGCGACTGGGCGTGGTGCAAAGGCCGGTGCAACAAGTAAGGTT AACACAGGGACCCGAGCATCAACTACCGGAAAGAAAAGTGGTGTTTCTGGGAAGGCTGGCAAGACAGATTCAGTTAACTA TAGACTTGATTAGTGATGCTGAAGAAAGTAAGTCAAAGAAGTCACAATATGAAGGTCCTGATCCTGAGTTGGCTGAAATG CTTGAAAGGGATGTGTTAGAAACCTCTCCTGGAGTGAGATGGGAGGATGTCGCTGGGCTTACTGAAGCAAAAAGGCTTCT AGAAGAAGCTGTTGTGCTTCCCCTATGGATGCCGGAATATTTCCAGGGAATTAGGAGACCATGGAAAGGTGTCCTCATGT TTGGTCCTCCAGGAACTGGGAAGACACTTCTTGCTAAAGCAGTTGCTACTGAATGTGGGACCACTTTCTTTAATGTTTCT TCTGCAACTTTGGCTTCTAAATGGCGTGGAGAGAGTGAGCGCATGGTGCGGTGTTTGTTTGATCTTGCAAGAGCATATGC ACCAAGTACAATTTTCATTGACGAAATTGATTCTCTGTGCAATTCTAGGGGGGCATCTGGAGAGCACGAATCATCCAGAA GGGTGAAATCTGAACTTCTAGTTCAGGTTGATGGTGTAAGCAATACTGCCACAAATGAAGATGGAAGCCGTAAAATAGTA ATGGTCTTGGCAGCTACTAACTTCCCATGGGACATAGATGAGGCACTGAGGAGAAGGCTGGAAAAGCGTATATATATTCC TCTTCCAAATTTTGAGAGTCGTAAAGAGCTGATCCGAATTAATTTGAAGACTGTTGAGGTGGCCCCTGATGTCAATATAG ATGAAGTGGCTCGCCGGACAGATGGCTATAGTGGAGATGATTTGACAAATGTCTGTCGTGATGCTTCCTTGAATGGTATG AGACGTAAAATAGCAGGAAAGACTCGTGATGAAATCAAGAACATGTCGAAGGATGATATTTCAAAGGATCCTGTTGCCAT GTGCGATTTTGAAGAAGCTTTGGTAAAGGTCCAACGAAGTGTTTCTCAGGCTGACATTGAACGCCATGAGAAGTGGTTTC ATGAATTTGGATCAGCTTAA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0361300.6) extracted from Lotus japonicus Gifu v1.2 Proteins.

MGHGLEVLLQEGVRLGVVQRPVQQVRLTQGPEHQLPERKVVFLGRLARQIQLTIDLISDAEESKSKKSQYEGPDPELAEM LERDVLETSPGVRWEDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVS SATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNSRGASGEHESSRRVKSELLVQVDGVSNTATNEDGSRKIV MVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIRINLKTVEVAPDVNIDEVARRTDGYSGDDLTNVCRDASLNGM RRKIAGKTRDEIKNMSKDDISKDPVAMCDFEEALVKVQRSVSQADIERHEKWFHEFGSA
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Hamap
MF_03023
1 379 379 33.916
IPR028596
PANTHER
PTHR23074
58 378 321 1.3E-194 –
PANTHER
PTHR23074:SF19
58 378 321 1.3E-194 –
Gene3D
G3DSA:3.40.50.300
89 372 284 8.1E-109 –
SUPERFAMILY
SSF52540
91 376 286 2.27E-61
IPR027417
CDD
cd00009
125 268 144 3.69475E-25 –
SMART
SM00382
127 270 144 5.3E-17
IPR003593
Pfam
PF00004
131 268 138 3.8E-38
IPR003959
ProSitePatterns
PS00674
240 259 20 -
IPR003960
Gene3D
G3DSA:1.10.8.60
269 357 89 8.1E-109 –
Pfam
PF17862
290 329 40 4.6E-12
IPR041569
Pfam
PF09336
332 377 46 3.0E-10
IPR015415

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of
GO:0008017
Molecular function Microtubule binding Interacting selectively and non-covalently with microtubules, filaments composed of tubulin monomers.
Subterm of
GO:0008568
Molecular function Microtubule-severing ATPase activity Catalysis of the reaction: ATP + H2O = ADP + phosphate. Catalysis of the severing of a microtubule at a specific spot along its length, coupled to the hydrolysis of ATP.
Subterm of
GO:0051013
Biological process Microtubule severing The process in which a microtubule is broken down into smaller segments. Severing enzymes remove dimers from the middle of the filament to create new ends, unlike depolymerizing kinesins that use ATP to uncap microtubules at their ends
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0361300.6, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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