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LotjaGi3g1v0367900.1

Overview

Field Value
Gene ID LotjaGi3g1v0367900
Transcript ID LotjaGi3g1v0367900.1
Lotus japonicus genome version Gifu v1.2
Description Histone H2A; TAIR: AT5G02560.1 histone H2A 12; Swiss-Prot: sp|A2XZN0|H2A6_ORYSI Probable histone H2A.6; TrEMBL-Plants: tr|K3XMR4|K3XMR4_SETIT Histone H2A; Found in the gene: LotjaGi3g1v0367900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:75393073..75394058) extracted from Lotus japonicus Gifu genome v1.2.

AGACACTACACGGATCGCCAAGCTGGCAGGCACTACACGGATCGCCAGGCTGGCCATCCTGAGCCGTCGATAAGATCCAA TCCAACAGTCCACATTTCTCCATCTACCCAAAATCCTTACTGCGACCGCAACAATGCCACTCACGAAGCCCTATAAAACC GCGCCAACGCATCATCCACTTCCATCTCACCACCACCAACCACCGTCACCGCTCACAAATTTTCTTATCCTCCTCCGCTA CAATCTAGGGTTCCGGCAATGGACACCACCACAGGAAAGGCAAAGAAAGGCGCCGGAGGGAGAAAGATCGGCGGCCCAAA GAAGAAGCCAGTTTCCAGATCCATCAAAGCCGGTCTCCAATTCCCCGTCGGAAGAATCGGCCGCTACTTGAAGAAAGGCC GATACGCTCAGCGCGTGGGAACCGGCGCTCCGGTGTACCTCGCCGCTGTTCTGGAGTATCTCGCGGCTGAGGTGCTTGAA TTGGCTGGAAACGCGGCGCGTGACAACAAGAAGAACAGGATTATCCCGAGGCATGTGCTGCTTGCTGTGAGGAACGATGA GGAGCTTGGGAAGTTGCTTGCTGGTGTGACTATTGCTCATGGCGGTGTTCTTCCGAATATTAACCCTGTGCTTCTGCCGA AGAAGACTGCTGAGAAGGTTGCCAAGGAGCCTAAGTCTCCGGCTAAGAAGGGTGTGAAATCGCCTAAGAAAGCTTAGATT TGGTTTTGGTTAATGTTTTTAGTTAATTAATTAAGGTTTCATTTGTGTGTGTGTGTGTGTGTGTGTATATTGCTGTTTAG GTCTTTCTTGTGTGATGGAAAGATTAAATGGGTTTGGGATAATGTAATTCTGATCTACCTCTAATTGTATCACCTGTAGG GAGTTTTATGCATCAATGGAAACATCTTGTTTTTAATCCCCAAAAAGTTGCGTTGCCATAGATCACACTTATTAGTTAAT GGATTCTTCATTTAAAAGAATAATTG
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0367900.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGACACCACCACAGGAAAGGCAAAGAAAGGCGCCGGAGGGAGAAAGATCGGCGGCCCAAAGAAGAAGCCAGTTTCCAG ATCCATCAAAGCCGGTCTCCAATTCCCCGTCGGAAGAATCGGCCGCTACTTGAAGAAAGGCCGATACGCTCAGCGCGTGG GAACCGGCGCTCCGGTGTACCTCGCCGCTGTTCTGGAGTATCTCGCGGCTGAGGTGCTTGAATTGGCTGGAAACGCGGCG CGTGACAACAAGAAGAACAGGATTATCCCGAGGCATGTGCTGCTTGCTGTGAGGAACGATGAGGAGCTTGGGAAGTTGCT TGCTGGTGTGACTATTGCTCATGGCGGTGTTCTTCCGAATATTAACCCTGTGCTTCTGCCGAAGAAGACTGCTGAGAAGG TTGCCAAGGAGCCTAAGTCTCCGGCTAAGAAGGGTGTGAAATCGCCTAAGAAAGCTTAG
Download CDS Sequence

Protein sequence (LotjaGi3g1v0367900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MDTTTGKAKKGAGGRKIGGPKKKPVSRSIKAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAAVLEYLAAEVLELAGNAA RDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTAEKVAKEPKSPAKKGVKSPKKA
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 27 27 - –
PANTHER
PTHR23430
4 151 148 4.7E-82 –
PANTHER
PTHR23430:SF253
4 151 148 4.7E-82 –
Gene3D
G3DSA:1.10.20.10
6 138 133 2.2E-62
IPR009072
SMART
SM00414
12 132 121 1.0E-78
IPR002119
CDD
cd00074
18 129 112 1.53541E-66
IPR002119
Pfam
PF00125
21 98 78 2.5E-12
IPR007125
PRINTS
PR00620
23 45 23 2.6E-51
IPR002119
SUPERFAMILY
SSF47113
26 129 104 7.51E-42
IPR009072
ProSitePatterns
PS00046
31 37 7 -
IPR032458
PRINTS
PR00620
52 67 16 2.6E-51
IPR002119
PRINTS
PR00620
67 80 14 2.6E-51
IPR002119
PRINTS
PR00620
81 95 15 2.6E-51
IPR002119
Pfam
PF16211
101 133 33 1.9E-18
IPR032454
PRINTS
PR00620
109 127 19 2.6E-51
IPR002119
MobiDBLite
mobidb-lite
131 152 22 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000786
Cellular component Nucleosome A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures.
Subterm of
Part of
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0046982
Molecular function Protein heterodimerization activity Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0367900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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