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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0406600 |
| Transcript ID | LotjaGi3g1v0406600.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 26S protease regulatory subunit; TAIR: AT1G53750.1 regulatory particle triple-A 1A; Swiss-Prot: sp|Q41365|PRS7_SPIOL 26S protease regulatory subunit 7; TrEMBL-Plants: tr|A0A1J7GVZ9|A0A1J7GVZ9_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0406600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:80997041..81001537) extracted from Lotus japonicus Gifu genome v1.2.
ACTTAAATGAATTATTTTAATTTTTTGATAAAGAGAAGTCATCTATATAAATTTTTTTTTATCTAACATATAAAAATAAA TATATTTCTCTCTCTTGCTCTAGTTCTTTCTTGCATAAAAGACCAAGCTGAAGCACTTTGTTCCTTGAATCTGGTTTCGC TTCTGTGTGAAGAAAATTTGCAACTTTACCAGAAAATCAGAATCGGAGTGAAGAGAAGAAGCAAAGAATGACAATTGATC ACGAAGATGAACTCAAGGACGAGAAGAATCCCCGACCCCTCGACGAGGATGACATCGCTCTCCTCAAAACCTACGTAAGC CCAAAACCCTAATTTCCCGATTTCCCCCTTTCTGATTTAGGTTTACCAGGTTTTCGTTCTTGTAACAATCGTACTGTTTT CATTGTGCTGTTTCCATATTAAAATCGAATCCTCATTCAATTTGTTTTCAGATTTGTATTATGCTGGTTCCAATCGCTTA GTGTGTGTTTTTTTTGGTGGAAATTTTCTGTTTAGGGTTTCCTATTTTACTTTATTCTGATTCTGGATCGTGGGTTTAGC TTAAAGTTTGTAACTTTATGGTAATTTTGGAATTCTAGGTTTACTCTGAGTAATGAAAGACATGAATTCCCTTTTGGTTG TTTTTCAGATTTTGGTAGGTTTTAGAGTTGTGGTTGCTAGTTTTAGGGCTTGTGTATTTGGTGTTTGGGGTAGCTGGGAG CTGTGTGATAATTACTCACAGATCATGATGTGGATGCACAAAGATTTCAATGTGGATGTTAATTAGAAACATTTAATCTC GCTTGATAGGCTTAATTGATTAGAGTTGCTGAGATGCTACAGTGCGTCTAGCTACGCTTGAATGTAGTGTTGAATTGATG TGGAGTGTGGACTCTCGACTCTGTGATGAGGAAAAGCTCGTAATTGTTATAGCTCAGGGATGTTTTGTTTGCTGAAAAGT TGTTTCTTGAGTTTTCCTGCTTAGCTTCTCTTAGTTGCTGGAATGATAATGCTTTTCAATGATCTGTGGTTCTCACACCA TTTTGTCTTTATGAACAGTCTTCTATAATATATTTTGGTTTACTTTATACAGGGTTTGGGGCCTTATTCCACAAGCATAA AAAAAGCGGAGAAGGAAATCAAAGATATGGCGAAGAAAGTAAATGACTTATGTGGTATGTGCAAAAGGTTTAGTTTGTTA CAGTATTTCATTATTGCTTTGTAGATCACCGTGATTGTTTAGTTAAAGAAAATTGCATCTTTACTCTATCTTTTCTTGGT ACTGTCAACTGTGGTAGGTATCGTCTGTGCCTTTTTACTCTCCTCCCTTTTGACAGTAATAAGTAGTCTTTATTCAACAT ATTTTCTATCTTATGTCTTAATGAAGGTGATAGGATTAATTAGTGGACATCTGTTGTTAACCAGAAAATTTTAAAATAAA AAAGAAAGAAAAAAGGAGTTAATAATTGATACTATATTGATATTCTTTTTCCATCAAGTTCATACTGGTTATCCTAATTG CATAGGCTGGATGGTGTTTACAATTGTACACTTAGATACTTGCTTTCGCTTGCAATAATAGGTATCAAGGAGTCTGATAC TGGATTAGCTGCACCAAGCCAATGGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAGGTTTTCC CCCCTTCCCCCTTTTTGTGTTGGATTTATTCAAAACATTTTTAATATTGGTTCTAGTTGCTTAATATGGCTATTTATTGA ACAGGTGGCAAGATGCACTAAGATCATCAATCCAAACTCTGAAGATGCGAAATATGTTATCAATGTGAAGCAGATTGCAA AGGTGCCTATCTTCATAACAATCTTCTTATTTTCCCCTTGTCTATTATATTTATTTGAAGATGTTTGGCATCACTTGCTG ATGAAGATATTCCCTGCTGACCAATTATTGTATATTCTATGTAAAATGCAAATGTTTTCCTTTCCTTTTGAAATTGGGTC TGATACACCTTCTGCTTTGATGATGACAGTTTGTTGTTGGGCTAGGAGACAAAGTCTCCCCCACTGACATCGAGGAAGGA ATGCGTGTTGGGTATGCTCCAAGTAACTTTGATACTAAAATATGACCCATAAAAAGACGAGTAACTTGATTGCCTTGTTA TATGTTTGTTTGTTTGACCTTTATTTCACCATTGCAGGGTTGATAGAAACAAATATCAGATTCAGATTCCGTTGCCTCCA AAAATTGATCCTAGTGTTACCATGATGACAGTTGAAGAGAAGCCAGATGTGACATATAATGATGTTGGTGGTTGCAAGGA GCAAATTGAGAAGATGCGTGAAGTAAGTTATTGAAAATTTAGTATATTTGATGTTACAACAAATGCAATATGTCACATGG CACTGAATTTTAATTTCTGTGCAAGGTTGTTGAACTGCCAATGCTTCATCCAGAGAAATTCGTCAAGCTTGGAATTGATC CTCCAAAGGGTGTTCTCTGTTATGGTCCACCAGGAACTGGCAAAACACTTCTGGCTAGGGCTGTGGCTAATAGGACCGAT GCTTGTTTTATAAGGGTTATTGGAAGTGAGCTGGTTCAGAAATATGTTGGTGAGGGAGCTCGGATGGTTCGTGAGCTGTT CCAGGTAAATGCCTTAGACCTCTCTACTGGCTCTTAGTCGTTGTTTCTATGACATGGTATCGTTTGTCTAAAATTGTTAT CTCCCATAGATGGCTCGTTCAAAGAAGGCCTGCATTGTATTTTTTGATGAAGTAGATGCAATTGGAGGGGCTCGATTTGA TGATGGTGTTGGTGGTGACAATGAGGTTCAGCGCACAATGCTTGAGATTGTGAATCAACTCGATGGGTTTGATGCTCGAG GAAACATCAAAGTTTTGATGGCAACTAACAGGTTGGTTGGTTTGGCCATTGCATGGTTTTTCCTTTGTTCTCTACTATTG ATGTTAACATGAGAATGTGTTCTTAAATATGCGTTGTGCCATTTTTACCATAATTATGATGTACTAAAATTCCCTTTTAA ATTATCTTTCGTCATACACTCTTAATTGCTTAAGGACTTCCTCACCTCTTCTAAGAAAAAGTAATATAAATCAAAGATGC ATTACAACTTCCCTTGCAAATATTTCATGTCATGCCTTTCTTCAATTTGGAAGTTTTACCACCGGTGAGTTGGCCTAATT GATTTTGTCTTTTTTGTCTGCAACTCTAGGCCTGACACTCTAGATCCAGCTCTACTTCGGCCTGGGCGATTGGATCGGAA AGTTGAATTTGGCCTTCCTGATTTAGAGAGTAGGACGCAGATATTCAAGATACACACAAGAACAATGAACTGTGAAAGGG ATATCCGTTTTGAACTTCTGTCTCGCCTTTGCCCAAATTCCACTGGTAAGAACATTTTTAAAACTGGACAATTTTAGTTG AGCATATACTTTTGGACCATCAATCTGCTAAGCTTTTCAGTATTTTGGCTTGTATACTTCCTGCTAAAACTTGATCTGTG TTTGAGATATTCCTGAAGCTTCTTGTTGCTGTCATGTTCTGATGTCTTGCTGCCAAAATTTTGCCTCATGCTTGTGTGCT TCTAATCTAGACATTGATTTTCTGACCATGGTATTTTTGTTCTCTCCAGGAGCTGATATCAGGAGTGTATGCACTGAAGC TGGTATGTATGCTATCCGTGCCCGAAGGAAGACTGTGACAGAGAAAGACTTCCTTGATGCAGTGAATAAAGTCATCAAAG GATACCAGAAGTTCAGTGCTACTCCCAAGTATATGGTCTACAACTGAGTTTTTCTTTCTTCTACTTTCCCAGAGACAATG TTAGCACGTACATTATGTATTTTCCCCAGTGAAAATTATTCAAAAGGGCATTTGGTTCTTTCATGAGGCAGTTTGTGAGA CTTGTCTGTTTAAATGCATCCTTCATAGTTGAACTCTTACAAGTATCTCTGTAGCTGATATTTTGCTAATGTCTCATTCA AAATTGTTTCGAATATTTTTACCATGTTTGACTTTCAATGGAAGAGAAAGGGTAATGATTCTCCTAGCTAGGGTTGAATC ATTTCAGTAATTAGAAAAAGTGTCGTGTTCAGTTAAAATTTATTATCTTTAACAATAGATGGCCCTTTGGGATTTTACTT GTTATCGATTGAACTTATAAATTAATTTATCAACAATTTTTTCCGGCAATTTATTTCGTTCATCATCTTAGCCTCACAAG ATGAGTAACAATTCAATACTTCATCCACACAATTTTTTTTTTGCAATTTTAACATAATATTGTATTTAAATATTTTACTC ACAAGTTTCAGCATAGTAGACAGATAACTGAATTTCTTAAGTATTTAGTCAAATGTTCAATTTCTAGGTGGTGTTCGTTC ATCATCTTAGCCTCACAAGATGAGTAACAATTCAATACTTCATCCACACAATTTTTTTTTTGCAATTTTAACATAATATT GTATTTAAATATTTTAC
CDS sequence (LotjaGi3g1v0406600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACAATTGATCACGAAGATGAACTCAAGGACGAGAAGAATCCCCGACCCCTCGACGAGGATGACATCGCTCTCCTCAA AACCTACGGTTTGGGGCCTTATTCCACAAGCATAAAAAAAGCGGAGAAGGAAATCAAAGATATGGCGAAGAAAGTAAATG ACTTATGTGGTATCAAGGAGTCTGATACTGGATTAGCTGCACCAAGCCAATGGGATCTTGTTTCTGATAAGCAAATGATG CAGGAGGAGCAGCCTCTTCAGGTGGCAAGATGCACTAAGATCATCAATCCAAACTCTGAAGATGCGAAATATGTTATCAA TGTGAAGCAGATTGCAAAGTTTGTTGTTGGGCTAGGAGACAAAGTCTCCCCCACTGACATCGAGGAAGGAATGCGTGTTG GGGTTGATAGAAACAAATATCAGATTCAGATTCCGTTGCCTCCAAAAATTGATCCTAGTGTTACCATGATGACAGTTGAA GAGAAGCCAGATGTGACATATAATGATGTTGGTGGTTGCAAGGAGCAAATTGAGAAGATGCGTGAAGTTGTTGAACTGCC AATGCTTCATCCAGAGAAATTCGTCAAGCTTGGAATTGATCCTCCAAAGGGTGTTCTCTGTTATGGTCCACCAGGAACTG GCAAAACACTTCTGGCTAGGGCTGTGGCTAATAGGACCGATGCTTGTTTTATAAGGGTTATTGGAAGTGAGCTGGTTCAG AAATATGTTGGTGAGGGAGCTCGGATGGTTCGTGAGCTGTTCCAGATGGCTCGTTCAAAGAAGGCCTGCATTGTATTTTT TGATGAAGTAGATGCAATTGGAGGGGCTCGATTTGATGATGGTGTTGGTGGTGACAATGAGGTTCAGCGCACAATGCTTG AGATTGTGAATCAACTCGATGGGTTTGATGCTCGAGGAAACATCAAAGTTTTGATGGCAACTAACAGGCCTGACACTCTA GATCCAGCTCTACTTCGGCCTGGGCGATTGGATCGGAAAGTTGAATTTGGCCTTCCTGATTTAGAGAGTAGGACGCAGAT ATTCAAGATACACACAAGAACAATGAACTGTGAAAGGGATATCCGTTTTGAACTTCTGTCTCGCCTTTGCCCAAATTCCA CTGGAGCTGATATCAGGAGTGTATGCACTGAAGCTGGTATGTATGCTATCCGTGCCCGAAGGAAGACTGTGACAGAGAAA GACTTCCTTGATGCAGTGAATAAAGTCATCAAAGGATACCAGAAGTTCAGTGCTACTCCCAAGTATATGGTCTACAACTG A
Protein sequence (LotjaGi3g1v0406600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTIDHEDELKDEKNPRPLDEDDIALLKTYGLGPYSTSIKKAEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMM QEEQPLQVARCTKIINPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVE EKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQ KYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL DPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLSRLCPNSTGADIRSVCTEAGMYAIRARRKTVTEK DFLDAVNKVIKGYQKFSATPKYMVYN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 423 | 422 | 1.6E-292 | – | |
| PANTHER | 2 | 423 | 422 | 1.6E-292 | – | |
| Gene3D | 34 | 157 | 124 | 7.2E-24 | – | |
| Coils | 38 | 58 | 21 | - | – | |
| TIGRFAM | 98 | 409 | 312 | 3.6E-124 | ||
| Gene3D | 158 | 337 | 180 | 4.7E-66 | – | |
| SUPERFAMILY | 163 | 416 | 254 | 9.94E-68 | ||
| CDD | 171 | 338 | 168 | 6.08096E-27 | – | |
| SMART | 201 | 340 | 140 | 2.6E-20 | ||
| Pfam | 205 | 337 | 133 | 2.4E-39 | ||
| ProSitePatterns | 308 | 326 | 19 | - | ||
| Gene3D | 339 | 411 | 73 | 1.5E-23 | – | |
| Pfam | 360 | 403 | 44 | 2.3E-9 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Cytoplasm | All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. | ||
| Molecular function | Hydrolase activity | Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. | ||
| Biological process | Protein catabolic process | The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds. |
Expression pattern of LotjaGi3g1v0406600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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