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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0406600 |
| Transcript ID | LotjaGi3g1v0406600.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 26S protease regulatory subunit, putative; TAIR: AT1G53750.1 regulatory particle triple-A 1A; Swiss-Prot: sp|Q9SSB5|PRS7A_ARATH 26S protease regulatory subunit 7 homolog A; TrEMBL-Plants: tr|M1A1A0|M1A1A0_SOLTU Uncharacterized protein; Found in the gene: LotjaGi3g1v0406600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:80997731..81001310) extracted from Lotus japonicus Gifu genome v1.2.
ATGACAATTGATCACGAAGATGAACTCAAGGACGAGAAGAATCCCCGACCCCTCGACGAGGATGACATCGCTCTCCTCAA AACCTACGTAAGCCCAAAACCCTAATTTCCCGATTTCCCCCTTTCTGATTTAGGTTTACCAGGTTTTCGTTCTTGTAACA ATCGTACTGTTTTCATTGTGCTGTTTCCATATTAAAATCGAATCCTCATTCAATTTGTTTTCAGATTTGTATTATGCTGG TTCCAATCGCTTAGTGTGTGTTTTTTTTGGTGGAAATTTTCTGTTTAGGGTTTCCTATTTTACTTTATTCTGATTCTGGA TCGTGGGTTTAGCTTAAAGTTTGTAACTTTATGGTAATTTTGGAATTCTAGGTTTACTCTGAGTAATGAAAGACATGAAT TCCCTTTTGGTTGTTTTTCAGATTTTGGTAGGTTTTAGAGTTGTGGTTGCTAGTTTTAGGGCTTGTGTATTTGGTGTTTG GGGTAGCTGGGAGCTGTGTGATAATTACTCACAGATCATGATGTGGATGCACAAAGATTTCAATGTGGATGTTAATTAGA AACATTTAATCTCGCTTGATAGGCTTAATTGATTAGAGTTGCTGAGATGCTACAGTGCGTCTAGCTACGCTTGAATGTAG TGTTGAATTGATGTGGAGTGTGGACTCTCGACTCTGTGATGAGGAAAAGCTCGTAATTGTTATAGCTCAGGGATGTTTTG TTTGCTGAAAAGTTGTTTCTTGAGTTTTCCTGCTTAGCTTCTCTTAGTTGCTGGAATGATAATGCTTTTCAATGATCTGT GGTTCTCACACCATTTTGTCTTTATGAACAGTCTTCTATAATATATTTTGGTTTACTTTATACAGGGTTTGGGGCCTTAT TCCACAAGCATAAAAAAAGCGGAGAAGGAAATCAAAGATATGGCGAAGAAAGTAAATGACTTATGTGGTATGTGCAAAAG GTTTAGTTTGTTACAGTATTTCATTATTGCTTTGTAGATCACCGTGATTGTTTAGTTAAAGAAAATTGCATCTTTACTCT ATCTTTTCTTGGTACTGTCAACTGTGGTAGGTATCGTCTGTGCCTTTTTACTCTCCTCCCTTTTGACAGTAATAAGTAGT CTTTATTCAACATATTTTCTATCTTATGTCTTAATGAAGGTGATAGGATTAATTAGTGGACATCTGTTGTTAACCAGAAA ATTTTAAAATAAAAAAGAAAGAAAAAAGGAGTTAATAATTGATACTATATTGATATTCTTTTTCCATCAAGTTCATACTG GTTATCCTAATTGCATAGGCTGGATGGTGTTTACAATTGTACACTTAGATACTTGCTTTCGCTTGCAATAATAGGTATCA AGGAGTCTGATACTGGATTAGCTGCACCAAGCCAATGGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCT CTTCAGGTTTTCCCCCCTTCCCCCTTTTTGTGTTGGATTTATTCAAAACATTTTTAATATTGGTTCTAGTTGCTTAATAT GGCTATTTATTGAACAGGTGGCAAGATGCACTAAGATCATCAATCCAAACTCTGAAGATGCGAAATATGTTATCAATGTG AAGCAGATTGCAAAGGTGCCTATCTTCATAACAATCTTCTTATTTTCCCCTTGTCTATTATATTTATTTGAAGATGTTTG GCATCACTTGCTGATGAAGATATTCCCTGCTGACCAATTATTGTATATTCTATGTAAAATGCAAATGTTTTCCTTTCCTT TTGAAATTGGGTCTGATACACCTTCTGCTTTGATGATGACAGTTTGTTGTTGGGCTAGGAGACAAAGTCTCCCCCACTGA CATCGAGGAAGGAATGCGTGTTGGGTATGCTCCAAGTAACTTTGATACTAAAATATGACCCATAAAAAGACGAGTAACTT GATTGCCTTGTTATATGTTTGTTTGTTTGACCTTTATTTCACCATTGCAGGGTTGATAGAAACAAATATCAGATTCAGAT TCCGTTGCCTCCAAAAATTGATCCTAGTGTTACCATGATGACAGTTGAAGAGAAGCCAGATGTGACATATAATGATGTTG GTGGTTGCAAGGAGCAAATTGAGAAGATGCGTGAAGTAAGTTATTGAAAATTTAGTATATTTGATGTTACAACAAATGCA ATATGTCACATGGCACTGAATTTTAATTTCTGTGCAAGGTTGTTGAACTGCCAATGCTTCATCCAGAGAAATTCGTCAAG CTTGGAATTGATCCTCCAAAGGGTGTTCTCTGTTATGGTCCACCAGGAACTGGCAAAACACTTCTGGCTAGGGCTGTGGC TAATAGGACCGATGCTTGTTTTATAAGGGTTATTGGAAGTGAGCTGGTTCAGAAATATGTTGGTGAGGGAGCTCGGATGG TTCGTGAGCTGTTCCAGGTAAATGCCTTAGACCTCTCTACTGGCTCTTAGTCGTTGTTTCTATGACATGGTATCGTTTGT CTAAAATTGTTATCTCCCATAGATGGCTCGTTCAAAGAAGGCCTGCATTGTATTTTTTGATGAAGTAGATGCAATTGGAG GGGCTCGATTTGATGATGGTGTTGGTGGTGACAATGAGGTTCAGCGCACAATGCTTGAGATTGTGAATCAACTCGATGGG TTTGATGCTCGAGGAAACATCAAAGTTTTGATGGCAACTAACAGGTTGGTTGGTTTGGCCATTGCATGGTTTTTCCTTTG TTCTCTACTATTGATGTTAACATGAGAATGTGTTCTTAAATATGCGTTGTGCCATTTTTACCATAATTATGATGTACTAA AATTCCCTTTTAAATTATCTTTCGTCATACACTCTTAATTGCTTAAGGACTTCCTCACCTCTTCTAAGAAAAAGTAATAT AAATCAAAGATGCATTACAACTTCCCTTGCAAATATTTCATGTCATGCCTTTCTTCAATTTGGAAGTTTTACCACCGGTG AGTTGGCCTAATTGATTTTGTCTTTTTTGTCTGCAACTCTAGGCCTGACACTCTAGATCCAGCTCTACTTCGGCCTGGGC GATTGGATCGGAAAGTTGAATTTGGCCTTCCTGATTTAGAGAGTAGGACGCAGATATTCAAGATACACACAAGAACAATG AACTGTGAAAGGGATATCCGTTTTGAACTTCTGTCTCGCCTTTGCCCAAATTCCACTGGTAAGAACATTTTTAAAACTGG ACAATTTTAGTTGAGCATATACTTTTGGACCATCAATCTGCTAAGCTTTTCAGTATTTTGGCTTGTATACTTCCTGCTAA AACTTGATCTGTGTTTGAGATATTCCTGAAGCTTCTTGTTGCTGTCATGTTCTGATGTCTTGCTGCCAAAATTTTGCCTC ATGCTTGTGTGCTTCTAATCTAGACATTGATTTTCTGACCATGGTATTTTTGTTCTCTCCAGGAGCTGATATCAGGAGTG TATGCACTGAAGCTGGTATGTATGCTATCCGTGCCCGAAGGAAGACTGTGACAGAGAAAGACTTCCTTGATGCAGTGAAT AAAGTCATCAAAGGATACCAGAAGTTCAGTGCTACTCCCAAGTATATGGTCTACAACTGA
CDS sequence (LotjaGi3g1v0406600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCGTGTTGGGGTTGATAGAAACAAATATCAGATTCAGATTCCGTTGCCTCCAAAAATTGATCCTAGTGTTACCATGAT GACAGTTGAAGAGAAGCCAGATGTGACATATAATGATGTTGGTGGTTGCAAGGAGCAAATTGAGAAGATGCGTGAAGTTG TTGAACTGCCAATGCTTCATCCAGAGAAATTCGTCAAGCTTGGAATTGATCCTCCAAAGGGTGTTCTCTGTTATGGTCCA CCAGGAACTGGCAAAACACTTCTGGCTAGGGCTGTGGCTAATAGGACCGATGCTTGTTTTATAAGGGTTATTGGAAGTGA GCTGGTTCAGAAATATGTTGGTGAGGGAGCTCGGATGGTTCGTGAGCTGTTCCAGATGGCTCGTTCAAAGAAGGCCTGCA TTGTATTTTTTGATGAAGTAGATGCAATTGGAGGGGCTCGATTTGATGATGGTGTTGGTGGTGACAATGAGGTTCAGCGC ACAATGCTTGAGATTGTGAATCAACTCGATGGGTTTGATGCTCGAGGAAACATCAAAGTTTTGATGGCAACTAACAGGCC TGACACTCTAGATCCAGCTCTACTTCGGCCTGGGCGATTGGATCGGAAAGTTGAATTTGGCCTTCCTGATTTAGAGAGTA GGACGCAGATATTCAAGATACACACAAGAACAATGAACTGTGAAAGGGATATCCGTTTTGAACTTCTGTCTCGCCTTTGC CCAAATTCCACTGGAGCTGATATCAGGAGTGTATGCACTGAAGCTGGTATGTATGCTATCCGTGCCCGAAGGAAGACTGT GACAGAGAAAGACTTCCTTGATGCAGTGAATAAAGTCATCAAAGGATACCAGAAGTTCAGTGCTACTCCCAAGTATATGG TCTACAACTGA
Protein sequence (LotjaGi3g1v0406600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGP PGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQR TMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLSRLC PNSTGADIRSVCTEAGMYAIRARRKTVTEKDFLDAVNKVIKGYQKFSATPKYMVYN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 27 | 27 | 3.1E-8 | – | |
| PANTHER | 1 | 293 | 293 | 1.6E-208 | – | |
| PANTHER | 1 | 293 | 293 | 1.6E-208 | – | |
| TIGRFAM | 2 | 279 | 278 | 8.0E-120 | ||
| Gene3D | 28 | 207 | 180 | 1.8E-66 | – | |
| SUPERFAMILY | 33 | 286 | 254 | 3.12E-68 | ||
| CDD | 41 | 208 | 168 | 1.59469E-27 | – | |
| SMART | 71 | 210 | 140 | 2.6E-20 | ||
| Pfam | 75 | 207 | 133 | 1.1E-39 | ||
| ProSitePatterns | 178 | 196 | 19 | - | ||
| Gene3D | 209 | 281 | 73 | 8.1E-24 | – | |
| Pfam | 230 | 273 | 44 | 1.4E-9 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Cytoplasm | All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. | ||
| Molecular function | Hydrolase activity | Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. | ||
| Biological process | Protein catabolic process | The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds. |
Expression pattern of LotjaGi3g1v0406600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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