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LotjaGi3g1v0406600.3

Overview

Field Value
Gene ID LotjaGi3g1v0406600
Transcript ID LotjaGi3g1v0406600.3
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description 26S protease regulatory subunit; TAIR: AT1G53750.1 regulatory particle triple-A 1A; Swiss-Prot: sp|Q41365|PRS7_SPIOL 26S protease regulatory subunit 7; TrEMBL-Plants: tr|A0A1J7GVZ9|A0A1J7GVZ9_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0406600
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:80997882..81001310) extracted from Lotus japonicus Gifu genome v1.2.

ATGACAATTGATCACGAAGATGAACTCAAGGACGAGAAGAATCCCCGACCCCTCGACGAGGATGACATCGCTCTCCTCAA AACCTACGTAAGCCCAAAACCCTAATTTCCCGATTTCCCCCTTTCTGATTTAGGTTTACCAGGTTTTCGTTCTTGTAACA ATCGTACTGTTTTCATTGTGCTGTTTCCATATTAAAATCGAATCCTCATTCAATTTGTTTTCAGATTTGTATTATGCTGG TTCCAATCGCTTAGTGTGTGTTTTTTTTGGTGGAAATTTTCTGTTTAGGGTTTCCTATTTTACTTTATTCTGATTCTGGA TCGTGGGTTTAGCTTAAAGTTTGTAACTTTATGGTAATTTTGGAATTCTAGGTTTACTCTGAGTAATGAAAGACATGAAT TCCCTTTTGGTTGTTTTTCAGATTTTGGTAGGTTTTAGAGTTGTGGTTGCTAGTTTTAGGGCTTGTGTATTTGGTGTTTG GGGTAGCTGGGAGCTGTGTGATAATTACTCACAGATCATGATGTGGATGCACAAAGATTTCAATGTGGATGTTAATTAGA AACATTTAATCTCGCTTGATAGGCTTAATTGATTAGAGTTGCTGAGATGCTACAGTGCGTCTAGCTACGCTTGAATGTAG TGTTGAATTGATGTGGAGTGTGGACTCTCGACTCTGTGATGAGGAAAAGCTCGTAATTGTTATAGCTCAGGGATGTTTTG TTTGCTGAAAAGTTGTTTCTTGAGTTTTCCTGCTTAGCTTCTCTTAGTTGCTGGAATGATAATGCTTTTCAATGATCTGT GGTTCTCACACCATTTTGTCTTTATGAACAGTCTTCTATAATATATTTTGGTTTACTTTATACAGGGTTTGGGGCCTTAT TCCACAAGCATAAAAAAAGCGGAGAAGGAAATCAAAGATATGGCGAAGAAAGTAAATGACTTATGTGGTATGTGCAAAAG GTTTAGTTTGTTACAGTATTTCATTATTGCTTTGTAGATCACCGTGATTGTTTAGTTAAAGAAAATTGCATCTTTACTCT ATCTTTTCTTGGTACTGTCAACTGTGGTAGGTATCGTCTGTGCCTTTTTACTCTCCTCCCTTTTGACAGTAATAAGTAGT CTTTATTCAACATATTTTCTATCTTATGTCTTAATGAAGGTGATAGGATTAATTAGTGGACATCTGTTGTTAACCAGAAA ATTTTAAAATAAAAAAGAAAGAAAAAAGGAGTTAATAATTGATACTATATTGATATTCTTTTTCCATCAAGTTCATACTG GTTATCCTAATTGCATAGGCTGGATGGTGTTTACAATTGTACACTTAGATACTTGCTTTCGCTTGCAATAATAGGTATCA AGGAGTCTGATACTGGATTAGCTGCACCAAGCCAATGGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCT CTTCAGGTTTTCCCCCCTTCCCCCTTTTTGTGTTGGATTTATTCAAAACATTTTTAATATTGGTTCTAGTTGCTTAATAT GGCTATTTATTGAACAGGTGGCAAGATGCACTAAGATCATCAATCCAAACTCTGAAGATGCGAAATATGTTATCAATGTG AAGCAGATTGCAAAGGTGCCTATCTTCATAACAATCTTCTTATTTTCCCCTTGTCTATTATATTTATTTGAAGATGTTTG GCATCACTTGCTGATGAAGATATTCCCTGCTGACCAATTATTGTATATTCTATGTAAAATGCAAATGTTTTCCTTTCCTT TTGAAATTGGGTCTGATACACCTTCTGCTTTGATGATGACAGTTTGTTGTTGGGCTAGGAGACAAAGTCTCCCCCACTGA CATCGAGGAAGGAATGCGTGTTGGGTATGCTCCAAGTAACTTTGATACTAAAATATGACCCATAAAAAGACGAGTAACTT GATTGCCTTGTTATATGTTTGTTTGTTTGACCTTTATTTCACCATTGCAGGGTTGATAGAAACAAATATCAGATTCAGAT TCCGTTGCCTCCAAAAATTGATCCTAGTGTTACCATGATGACAGTTGAAGAGAAGCCAGATGTGACATATAATGATGTTG GTGGTTGCAAGGAGCAAATTGAGAAGATGCGTGAAGTAAGTTATTGAAAATTTAGTATATTTGATGTTACAACAAATGCA ATATGTCACATGGCACTGAATTTTAATTTCTGTGCAAGGTTGTTGAACTGCCAATGCTTCATCCAGAGAAATTCGTCAAG CTTGGAATTGATCCTCCAAAGGGTGTTCTCTGTTATGGTCCACCAGGAACTGGCAAAACACTTCTGGCTAGGGCTGTGGC TAATAGGACCGATGCTTGTTTTATAAGGGTTATTGGAAGTGAGCTGGTTCAGAAATATGTTGGTGAGGGAGCTCGGATGG TTCGTGAGCTGTTCCAGGTAAATGCCTTAGACCTCTCTACTGGCTCTTAGTCGTTGTTTCTATGACATGGTATCGTTTGT CTAAAATTGTTATCTCCCATAGATGGCTCGTTCAAAGAAGGCCTGCATTGTATTTTTTGATGAAGTAGATGCAATTGGAG GGGCTCGATTTGATGATGGTGTTGGTGGTGACAATGAGGTTCAGCGCACAATGCTTGAGATTGTGAATCAACTCGATGGG TTTGATGCTCGAGGAAACATCAAAGTTTTGATGGCAACTAACAGGTTGGTTGGTTTGGCCATTGCATGGTTTTTCCTTTG TTCTCTACTATTGATGTTAACATGAGAATGTGTTCTTAAATATGCGTTGTGCCATTTTTACCATAATTATGATGTACTAA AATTCCCTTTTAAATTATCTTTCGTCATACACTCTTAATTGCTTAAGGACTTCCTCACCTCTTCTAAGAAAAAGTAATAT AAATCAAAGATGCATTACAACTTCCCTTGCAAATATTTCATGTCATGCCTTTCTTCAATTTGGAAGTTTTACCACCGGTG AGTTGGCCTAATTGATTTTGTCTTTTTTGTCTGCAACTCTAGGCCTGACACTCTAGATCCAGCTCTACTTCGGCCTGGGC GATTGGATCGGAAAGTTGAATTTGGCCTTCCTGATTTAGAGAGTAGGACGCAGATATTCAAGATACACACAAGAACAATG AACTGTGAAAGGGATATCCGTTTTGAACTTCTGTCTCGCCTTTGCCCAAATTCCACTGGTAAGAACATTTTTAAAACTGG ACAATTTTAGTTGAGCATATACTTTTGGACCATCAATCTGCTAAGCTTTTCAGTATTTTGGCTTGTATACTTCCTGCTAA AACTTGATCTGTGTTTGAGATATTCCTGAAGCTTCTTGTTGCTGTCATGTTCTGATGTCTTGCTGCCAAAATTTTGCCTC ATGCTTGTGTGCTTCTAATCTAGACATTGATTTTCTGACCATGGTATTTTTGTTCTCTCCAGGAGCTGA
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0406600.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGACAATTGATCACGAAGATGAACTCAAGGACGAGAAGAATCCCCGACCCCTCGACGAGGATGACATCGCTCTCCTCAA AACCTACGGTTTGGGGCCTTATTCCACAAGCATAAAAAAAGCGGAGAAGGAAATCAAAGATATGGCGAAGAAAGTAAATG ACTTATGTGGTATCAAGGAGTCTGATACTGGATTAGCTGCACCAAGCCAATGGGATCTTGTTTCTGATAAGCAAATGATG CAGGAGGAGCAGCCTCTTCAGGTGGCAAGATGCACTAAGATCATCAATCCAAACTCTGAAGATGCGAAATATGTTATCAA TGTGAAGCAGATTGCAAAGTTTGTTGTTGGGCTAGGAGACAAAGTCTCCCCCACTGACATCGAGGAAGGAATGCGTGTTG GGGTTGATAGAAACAAATATCAGATTCAGATTCCGTTGCCTCCAAAAATTGATCCTAGTGTTACCATGATGACAGTTGAA GAGAAGCCAGATGTGACATATAATGATGTTGGTGGTTGCAAGGAGCAAATTGAGAAGATGCGTGAAGTTGTTGAACTGCC AATGCTTCATCCAGAGAAATTCGTCAAGCTTGGAATTGATCCTCCAAAGGGTGTTCTCTGTTATGGTCCACCAGGAACTG GCAAAACACTTCTGGCTAGGGCTGTGGCTAATAGGACCGATGCTTGTTTTATAAGGGTTATTGGAAGTGAGCTGGTTCAG AAATATGTTGGTGAGGGAGCTCGGATGGTTCGTGAGCTGTTCCAGATGGCTCGTTCAAAGAAGGCCTGCATTGTATTTTT TGATGAAGTAGATGCAATTGGAGGGGCTCGATTTGATGATGGTGTTGGTGGTGACAATGAGGTTCAGCGCACAATGCTTG AGATTGTGAATCAACTCGATGGGTTTGATGCTCGAGGAAACATCAAAGTTTTGATGGCAACTAACAGGCCTGACACTCTA GATCCAGCTCTACTTCGGCCTGGGCGATTGGATCGGAAAGTTGAATTTGGCCTTCCTGATTTAGAGAGTAGGACGCAGAT ATTCAAGATACACACAAGAACAATGAACTGTGAAAGGGATATCCGTTTTGAACTTCTGTCTCGCCTTTGCCCAAATTCCA CTGGTAAGAACATTTTTAAAACTGGACAATTTTAG
Download CDS Sequence

Protein sequence (LotjaGi3g1v0406600.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MTIDHEDELKDEKNPRPLDEDDIALLKTYGLGPYSTSIKKAEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMM QEEQPLQVARCTKIINPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVE EKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQ KYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL DPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLSRLCPNSTGKNIFKTGQF
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR23073
1 378 378 7.5E-262 –
PANTHER
PTHR23073:SF80
1 378 378 7.5E-262 –
Gene3D
G3DSA:2.40.50.140
34 157 124 6.7E-24 –
Coils
Coil
38 58 21 - –
TIGRFAM
TIGR01242
98 377 280 5.5E-108
IPR005937
Gene3D
G3DSA:3.40.50.300
158 337 180 3.7E-66 –
SUPERFAMILY
SSF52540
163 374 212 2.13E-59
IPR027417
CDD
cd00009
171 338 168 6.79198E-27 –
SMART
SM00382
201 340 140 2.6E-20
IPR003593
Pfam
PF00004
205 337 133 1.9E-39
IPR003959
ProSitePatterns
PS00674
308 326 19 -
IPR003960
Gene3D
G3DSA:1.10.8.60
339 380 42 4.6E-7 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of
GO:0005737
Cellular component Cytoplasm All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
Subterm of
GO:0016787
Molecular function Hydrolase activity Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
Subterm of
GO:0030163
Biological process Protein catabolic process The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0406600.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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