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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0421600 |
| Transcript ID | LotjaGi3g1v0421600.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein; TAIR: AT1G14650.1 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein; Swiss-Prot: sp|Q8RXF1|SF3A1_ARATH Probable splicing factor 3A subunit 1; TrEMBL-Plants: tr|A0A0S3SM17|A0A0S3SM17_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0421600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:82995790..82998556) extracted from Lotus japonicus Gifu genome v1.2.
TCTGCGGAACAATCTGGTAATCTACAAATTCTTCTTCCTCTAATTAACTAAACCCTAATCTGGTAAATTCTCCATAGCAA TGAGTTATATCCAATAGAATTTGATGTTTTCCCACGTGTAAAACATGAGCTTTTGATTAATCTGTTCTCTTTCTTTTGTT TTTCATTGCAGGGGGTGTAGTTAGCAAGAGGCTGCTGGCTTTGGGATATACACCATGCTAGGTTCATTGCCCATACTACC TCTCCCGGCTCCTCCGCTCGATGGAAATCTCGGTCCTCTTCCCGATTCTCAGGTTACCGAGGAGAGGAGGGATGAGAGGC CCTCTGATGAGGAGCAGAGAGCTTCTGCTCCGCCGCCCGCGACTGTCGCGACACACACTAGAACCATTGGGATAATTCAT CCCCCTCCGGATATCAGGACTATTGTAGATAAAACCTCGCAGTTCGTGGCTAAAAATGGTCCCGAATTCGAGAAGAGGAT TATTGCGAATAACACAGGGAATGCCAAGTTTAATTTCCTGAACGCGTCGGATCCTTATCACGCGTACTACCAGCATCGCT TGGCTGAATTTCGTTCCCAGAATCAGTCTTCTGCACAGGAGTCTGGAGACGACTCGGTCGTTCCTGAATCAACCCCGTCT GCACCAGCCCCTGATGGTAATGGTGTTGTGGAAGCAGCGGAGAAGCCGGATATTTCTGCCCAGTTTAGACCGGTGAGGAA AGTGCTTGAGCCACCTGAGGCTGAGCAGTACACGGTTAGGCTTCCTGAAGGAATAACAGGGGAAGAGCTGGACATTATAA AGCTTACAGCACAGTTTGTGGCTCGAAATGGGAAATCATTTTTGACAGGATTGACTAGTAGGGAAGTTAATAATGCCCAA TTCCATTTCTTGAAACCAACTCACAGCATGTTTACATTTTTTACTTCGCTTGCGGATGCGTATTCAAAGGTTTTGATGCC TCAGAAGGGTTTGACAGAGAAGCTTAGGAAGAGTGTCCCTGACATGACTACTATCCTTGAAAGGTGTGTAAACAGGCTGG AATGGGAGCGTTCACAGGAGCAAGCTAGGCAAAAGGCTGAGGATGAGATCGAGCAGGAAAGAATACAAATGGCTATGATT GATTGGCATGATTTTGTGGTGGTTGAAACAATAGATTTTGCTGACGATGAGGATGAAGAATTACCGGCTCCAATGACCCT TGAGGAGGTGATAAGGAGAAGCAAGGTGTCGTCAGCCATGGATGAAGATTTTGTTGAGCCTGGAAAGGACATGGAAATTG ATATGGATGAGGAAGAGACCCGGCTTGTTGAAGAGGGCATGAGAGCTGCTAGTTTGGAAGACAATGGTGATGGGAAGAAG AACGAAATTAAGGTTACTGAAGACCCTGAACCACCAATGAGGATTGTGAAGAACTGGAAGAGACCAGAGGACAGAGTTCC CGCAGAAAGAGATCCAACCAAGTTTGTTGTTTCTCCTATCACTGGTGAGCTGATTCCTATTAGTGAAATGTCAGAACATA TACGAATTTCTCTCATTGATCCTAAATACAAAGAACAAAAAGAAAGGATGTTTGCCAAAATTCGAGAAACAACTCTGGCT CAGGATGATGAAATCTCAAGAAACATTGTTGGACTAGCAAGGACTCGTCCTGATATCTTTGGTACTACGGAGGAAGAGGT TTCCAATGCTGTCAAGGCAGAAATTGAGAAGAAAAATGATGAGCAACCTAAGCAGGTTATATGGGATGGTCACACGGGAA GTATTGGCCGTACTGCAAACCAAGCCATGTCACAGAGTATTGGGAGTGAGGATCAAAATGAGGCCAGGAACCTTCCTGGT CCTGCTGCACCTCCTCCAAGACCTGGTATGCCTTCAATTCGTCCTCTTCCACCACCACCTGGACTAGCATTGAATCTTCC TCGTGTTCCTCCCAACTTTCAGTATTCTGCTCAGCATAGTGCCGGCCTTCCAATGCCTCCTCCAAGACCACCAGTCATTC CCATGATTCCATCTGTCCGGCCTGCTCCCCCTCCTCCAATGCAAATGACGTCTGGACAGCAGTCTGTTATGGCTGGTCAA CAACCTCCAATGGCTCCATCAATTTCTATGAATGGCCAACCAATGCACATACCTCCACCACCTGGATCTCAGTTCACTCC TGTTCCGAGGCCTTATAATCCTATGTCTCATCCACCACCAATGATGCCTATGAATATGATGCATCCACCTCCCATGCCTC AAGGAATGCCACCACCACCGCCTGAGGAAGCTCCTCCCCCACTTCCAGAGGAACCAGAACCAAAGAAGCAAAAGCTTGAT GATTCTTCTCTGATCCCAGAAGATCAATTTCTGGCCCAACATCCCGTATGGAGTTACTGAGTTAACAATTACTTTTTTTT TCAAAATAAAGAATACATGATTAAATTGTGTTTACCATCAGTGTTATACTGCTGTTTATGTTCATCCTAATTTGAATTTT GTTGTCTTTCTCTCCAGGGACCTGTTCGCATCAGTATATCTGTTCCTAATGTTGATGAAGGAAATCTCAAAGGACAAGTT CTGGAAATAACTGTGCAATCGCTGACTGAAACTGTTGCCAGTCTGAAGGAAAAAATTGCCGGGGAAATCCAGCTCCCTGC TAACAAGCAGAAATTGAGTGGAAAGCCAGGCTTTTTTAAGGATAATTTGTCACTTGCTCATTACAACGTCAGTGGAGGAG AGACACTTGCCCTGTCCTTAAGAGAGCGTGGTGGTAGAAAGAGATGA
CDS sequence (LotjaGi3g1v0421600.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTAGGTTCATTGCCCATACTACCTCTCCCGGCTCCTCCGCTCGATGGAAATCTCGGTCCTCTTCCCGATTCTCAGGT TACCGAGGAGAGGAGGGATGAGAGGCCCTCTGATGAGGAGCAGAGAGCTTCTGCTCCGCCGCCCGCGACTGTCGCGACAC ACACTAGAACCATTGGGATAATTCATCCCCCTCCGGATATCAGGACTATTGTAGATAAAACCTCGCAGTTCGTGGCTAAA AATGGTCCCGAATTCGAGAAGAGGATTATTGCGAATAACACAGGGAATGCCAAGTTTAATTTCCTGAACGCGTCGGATCC TTATCACGCGTACTACCAGCATCGCTTGGCTGAATTTCGTTCCCAGAATCAGTCTTCTGCACAGGAGTCTGGAGACGACT CGGTCGTTCCTGAATCAACCCCGTCTGCACCAGCCCCTGATGGTAATGGTGTTGTGGAAGCAGCGGAGAAGCCGGATATT TCTGCCCAGTTTAGACCGGTGAGGAAAGTGCTTGAGCCACCTGAGGCTGAGCAGTACACGGTTAGGCTTCCTGAAGGAAT AACAGGGGAAGAGCTGGACATTATAAAGCTTACAGCACAGTTTGTGGCTCGAAATGGGAAATCATTTTTGACAGGATTGA CTAGTAGGGAAGTTAATAATGCCCAATTCCATTTCTTGAAACCAACTCACAGCATGTTTACATTTTTTACTTCGCTTGCG GATGCGTATTCAAAGGTTTTGATGCCTCAGAAGGGTTTGACAGAGAAGCTTAGGAAGAGTGTCCCTGACATGACTACTAT CCTTGAAAGGTGTGTAAACAGGCTGGAATGGGAGCGTTCACAGGAGCAAGCTAGGCAAAAGGCTGAGGATGAGATCGAGC AGGAAAGAATACAAATGGCTATGATTGATTGGCATGATTTTGTGGTGGTTGAAACAATAGATTTTGCTGACGATGAGGAT GAAGAATTACCGGCTCCAATGACCCTTGAGGAGGTGATAAGGAGAAGCAAGGTGTCGTCAGCCATGGATGAAGATTTTGT TGAGCCTGGAAAGGACATGGAAATTGATATGGATGAGGAAGAGACCCGGCTTGTTGAAGAGGGCATGAGAGCTGCTAGTT TGGAAGACAATGGTGATGGGAAGAAGAACGAAATTAAGGTTACTGAAGACCCTGAACCACCAATGAGGATTGTGAAGAAC TGGAAGAGACCAGAGGACAGAGTTCCCGCAGAAAGAGATCCAACCAAGTTTGTTGTTTCTCCTATCACTGGTGAGCTGAT TCCTATTAGTGAAATGTCAGAACATATACGAATTTCTCTCATTGATCCTAAATACAAAGAACAAAAAGAAAGGATGTTTG CCAAAATTCGAGAAACAACTCTGGCTCAGGATGATGAAATCTCAAGAAACATTGTTGGACTAGCAAGGACTCGTCCTGAT ATCTTTGGTACTACGGAGGAAGAGGTTTCCAATGCTGTCAAGGCAGAAATTGAGAAGAAAAATGATGAGCAACCTAAGCA GGTTATATGGGATGGTCACACGGGAAGTATTGGCCGTACTGCAAACCAAGCCATGTCACAGAGTATTGGGAGTGAGGATC AAAATGAGGCCAGGAACCTTCCTGGTCCTGCTGCACCTCCTCCAAGACCTGGTATGCCTTCAATTCGTCCTCTTCCACCA CCACCTGGACTAGCATTGAATCTTCCTCGTGTTCCTCCCAACTTTCAGTATTCTGCTCAGCATAGTGCCGGCCTTCCAAT GCCTCCTCCAAGACCACCAGTCATTCCCATGATTCCATCTGTCCGGCCTGCTCCCCCTCCTCCAATGCAAATGACGTCTG GACAGCAGTCTGTTATGGCTGGTCAACAACCTCCAATGGCTCCATCAATTTCTATGAATGGCCAACCAATGCACATACCT CCACCACCTGGATCTCAGTTCACTCCTGTTCCGAGGCCTTATAATCCTATGTCTCATCCACCACCAATGATGCCTATGAA TATGATGCATCCACCTCCCATGCCTCAAGGAATGCCACCACCACCGCCTGAGGAAGCTCCTCCCCCACTTCCAGAGGAAC CAGAACCAAAGAAGCAAAAGCTTGATGATTCTTCTCTGATCCCAGAAGATCAATTTCTGGCCCAACATCCCGGACCTGTT CGCATCAGTATATCTGTTCCTAATGTTGATGAAGGAAATCTCAAAGGACAAGTTCTGGAAATAACTGTGCAATCGCTGAC TGAAACTGTTGCCAGTCTGAAGGAAAAAATTGCCGGGGAAATCCAGCTCCCTGCTAACAAGCAGAAATTGAGTGGAAAGC CAGGCTTTTTTAAGGATAATTTGTCACTTGCTCATTACAACGTCAGTGGAGGAGAGACACTTGCCCTGTCCTTAAGAGAG CGTGGTGGTAGAAAGAGATGA
Protein sequence (LotjaGi3g1v0421600.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLGSLPILPLPAPPLDGNLGPLPDSQVTEERRDERPSDEEQRASAPPPATVATHTRTIGIIHPPPDIRTIVDKTSQFVAK NGPEFEKRIIANNTGNAKFNFLNASDPYHAYYQHRLAEFRSQNQSSAQESGDDSVVPESTPSAPAPDGNGVVEAAEKPDI SAQFRPVRKVLEPPEAEQYTVRLPEGITGEELDIIKLTAQFVARNGKSFLTGLTSREVNNAQFHFLKPTHSMFTFFTSLA DAYSKVLMPQKGLTEKLRKSVPDMTTILERCVNRLEWERSQEQARQKAEDEIEQERIQMAMIDWHDFVVVETIDFADDED EELPAPMTLEEVIRRSKVSSAMDEDFVEPGKDMEIDMDEEETRLVEEGMRAASLEDNGDGKKNEIKVTEDPEPPMRIVKN WKRPEDRVPAERDPTKFVVSPITGELIPISEMSEHIRISLIDPKYKEQKERMFAKIRETTLAQDDEISRNIVGLARTRPD IFGTTEEEVSNAVKAEIEKKNDEQPKQVIWDGHTGSIGRTANQAMSQSIGSEDQNEARNLPGPAAPPPRPGMPSIRPLPP PPGLALNLPRVPPNFQYSAQHSAGLPMPPPRPPVIPMIPSVRPAPPPPMQMTSGQQSVMAGQQPPMAPSISMNGQPMHIP PPPGSQFTPVPRPYNPMSHPPPMMPMNMMHPPPMPQGMPPPPPEEAPPPLPEEPEPKKQKLDDSSLIPEDQFLAQHPGPV RISISVPNVDEGNLKGQVLEITVQSLTETVASLKEKIAGEIQLPANKQKLSGKPGFFKDNLSLAHYNVSGGETLALSLRE RGGRKR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 67 | 67 | - | – | |
| MobiDBLite | 26 | 41 | 16 | - | – | |
| PANTHER | 40 | 805 | 766 | 2.2E-225 | – | |
| PANTHER | 40 | 805 | 766 | 2.2E-225 | – | |
| SUPERFAMILY | 43 | 122 | 80 | 7.72E-23 | ||
| Gene3D | 66 | 122 | 57 | 1.4E-24 | ||
| Pfam | 68 | 119 | 52 | 2.3E-20 | ||
| SMART | 68 | 121 | 54 | 1.3E-25 | ||
| ProSiteProfiles | 70 | 112 | 43 | 18.135 | ||
| MobiDBLite | 121 | 152 | 32 | - | – | |
| MobiDBLite | 121 | 137 | 17 | - | – | |
| SUPERFAMILY | 170 | 244 | 75 | 1.11E-20 | ||
| Gene3D | 187 | 245 | 59 | 3.1E-23 | ||
| Pfam | 192 | 243 | 52 | 8.7E-17 | ||
| SMART | 192 | 245 | 54 | 4.3E-21 | ||
| ProSiteProfiles | 194 | 236 | 43 | 16.862 | ||
| Pfam | 263 | 476 | 214 | 4.9E-60 | ||
| Coils | 278 | 298 | 21 | - | – | |
| MobiDBLite | 524 | 558 | 35 | - | – | |
| MobiDBLite | 541 | 558 | 18 | - | – | |
| PRINTS | 545 | 561 | 17 | 6.8E-11 | – | |
| PRINTS | 581 | 593 | 13 | 6.8E-11 | – | |
| PRINTS | 596 | 617 | 22 | 6.8E-11 | – | |
| PRINTS | 648 | 665 | 18 | 6.8E-11 | – | |
| MobiDBLite | 667 | 689 | 23 | - | – | |
| MobiDBLite | 667 | 706 | 40 | - | – | |
| PRINTS | 671 | 696 | 26 | 6.8E-11 | – | |
| MobiDBLite | 690 | 705 | 16 | - | – | |
| Gene3D | 695 | 805 | 111 | 2.2E-34 | – | |
| SUPERFAMILY | 698 | 804 | 107 | 5.3E-22 | ||
| CDD | 719 | 799 | 81 | 7.13622E-30 | – | |
| SMART | 727 | 799 | 73 | 3.0E-9 | ||
| Pfam | 734 | 801 | 68 | 4.0E-8 | ||
| ProSiteProfiles | 747 | 803 | 57 | 14.273 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | RNA processing | Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules. |
Expression pattern of LotjaGi3g1v0421600.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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