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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0425500 |
| Transcript ID | LotjaGi3g1v0425500.1 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transmembrane 9 superfamily member; TAIR: AT3G13772.1 transmembrane nine 7; Swiss-Prot: sp|Q9LIC2|TMN7_ARATH Transmembrane 9 superfamily member 7; TrEMBL-Plants: tr|A0A072TLT0|A0A072TLT0_MEDTR Transmembrane 9 superfamily member; Found in the gene: LotjaGi3g1v0425500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:83508993..83513335) extracted from Lotus japonicus Gifu genome v1.2.
AAAAAAAAGTCTATGTGGGTTCGCGAGGTTAGTAACTAGTAGGCAGTAGCAATCAACACACTCACCTCACCTCACCTCTG ACACCTCATTTCTTTCTTTATACTACTCACATCATCTTCCTATCTCTCTCTCTCTCTTTTCCCTCATTCACCGCTCACTC ACTCCCAATCTCACAAACGACGAACAACATGATGGGTGGCACCGCCGTCTCCGCCCGTTCAACCGCCGCCATCTCCGTCG CTATCCTCCTTCTCATCTCCTCCGCCCACTCCTTCTACCTCCCCGGCGTTGCTCCTCGCGATTTCCAAACCGTAAGTCTC CCATTCCCCCTCTCTCGTTACTCTCCTTCGAATTTCTACGCGATGCGCTTCTTTGCTTTCTCGATCACTGCTGATTCCTC GTGAAATTGCCTGGATCTAGGGTTTTAGCTCTGATCTGTGTTGATTCCTTTGCCCTCTTCTTCATTCGCTTGCAATTATT ACTATTATTATTGTTGATTATCATTATTAGAACTCAATTTTTGTTCTGGTTACTACTATCATGATTTCGCTGGTGGTTTG TTGTTAGAATTTATTGTCTGATGGAACCCTTAGTTATGCTTAAGGATACTCATTTTGTCAATTAATCTCTGGTGATATTC ATTTTCAGTTTCGAGCTCATTCATCACCGTTTTAGTGTTAATTGTTATTCTTCTCTGTTGTAAGGCTCCTCATCATGTGT GTTGAGCATAGTAGTCAATCGCGGATCGCGGATGACCCCCAAAAATGAAATCCCATACAAGGGAAGGCCGCTATTGGCCG TGAATGGTATTCGCGGCCCCAATCCCGTCGCAGACCCCTGCCGCGCACTATCGATAACTATGGTGTTGAGTGATAAATCT TGATTTTGATTTTGATAATTGGTAGGTGCATGTGAAACTGTTTGTTAGATAGGGATGTGTGGTATGTGGTCGCGTGTGAT TTGTGAATTCGTAATTTTTTAGTTTTGATTTGGAAAGTGTGGTTGAGATTGAGAACGTTTTGTCTCAATTTGTTGATTTT TTTGGGTTCTAGTTTTATTGCTTGTGCTTGAAGATTTTGATTTCTTGTTTCTTCTGTGGGAACAGGGTGATGCCCTTTAT GTCAAAGTGAACAAATTATCATCTACCAAGACTCAACTTCCGTATGACTACTACTACTTGAAGTATTGCAAACCCTCCAA GATTCTGAACAGCGCAGAAAATTTGGGAGAGGTTCTTCGAGGCGATCGTATTGAAAATTCTATATATACGGTGGGTATCT ATCACCTCTTCCTGTAACAATTGGATAACATGGCCATGGAATTCAGTGACTATTGTTTGTTTTGTTATGCCAACCTAAGG AATTTTGTTCTCTTTTCCCCTCAGTTTCACATGAGGAAAGAACAGTCTTGTACTGTTTCTTGTCATCAAATTTTGGATGC TGAAGCTGCGAAGAATTTTAAAGAAAAAATTGATGATGAATATCGAGTGAACATGTAAGTGTTCAGTATACTGAGGCCGG TACCTAGTTATATAGTAGTATTATGAATTTATCAAATTACTCTTCTGAGATTTGTAGGCCAGTTTATACTTTATAGGTTT CTTTCGGCTTTGTATTTCTTTGATCCTTAAAGCTTTGAATTGAACATGCAGGATTTTGGATAACCTTCCAGTTGCTGTTC TTAGACAAAGGAGGGATGGAAGTCAATCAACAACATATGAGCATGGTTTTCGTGTTGGGTTCAAGGGAAACTATCAAGGG GTATAACTCAGCTTGAATTTCTATTGTGGAATTTCAATTATCATTTTTGTCTTCTGATTCTTACAATTTTCCAATTTTCC TGCAGAGCAAGGAAGAGAAATATTTTATCAATAACCACTTGAGTTTTAGAGTCATGTATCACAAGGATCCTGAAACTGGT TCTGCTCGCATTGTTGGATTTGAGGTCACACCAAACAGGTCTTGTTCTTTTCTTCACCTTCCTAACTCTCTCTCTCTCTC TCTCTACATATGTGTGTGTGTTTATGTATCTGCTTACGGGGTAGTTCATTCTTATGTTGGCATAACATGGCCGTTGGATT TTATTTTTTATATCTGGAATTGGATGTTGTTTGGAAGAAAGCAAGCTGGAACTGATTAGTTGGATGATTTTCTAATAGAT CTTACCTATGTGGTGATATAGCTTTTGTTCTAATAATATTTTGTCATAGACATCTTATGGATGGTCTCTTAGATACTCCT GTCCTCTTTCCTGATAGGTATCATACTTTTTGCTTTTTACAATTTTGCTTGTTCACCTGTGTTGAGTATATTTTTTATAA TAGAGTACCTAACTACCTATATATATGATTGCTTTCTTGTTACATTTCAAATGACTGCTTAAGGTATGTTCTGTCTCTCT TATGAGTTCTACAAATGTAAACAGTATTAATCATGAATACAAGGAGTGGAATGACAAAAATCCGCAAGTAACAACATGTA ATAAAGATACCAAGAATTTGATGCAAGGTAGTACTGTCCCACAAGAAGTTGATACAGGCAAGGACATCGTATTCACATAT GATGTTTCCTTTAAGGTATTGCTGATTGAAAGCTTGACATTCATCAACTCTCACCTCATCCATTATATGACTCTATAAGC TAAGTTTTCTGCCCCTTTTCCAGGAAAGTGATATCAAATGGGCATCACGATGGGACACATATCTTCTAATGAATGATGAT CAGATCCACTGGTTTTCTATCATAAACTCTCTGATGATTGTGCTTTTCCTTTCTGGAATGGTGGCAATGATCATGATGAG GACTCTTTACAGAGACATTGCCAATTATAACCAGCTAGAAACCCAAGATGAGGCCCAAGAAGAAACAGGGTGGAAACTTG TTCATGGAGATGTTTTCAGGGCACCAGTCAATTCAAATTTGCTTTGTGTTTATGTTGGTACTGGTGTTCAGATCTTTGCA ATGACACTTGTGACAATGATATTTGCTTTGCTAGGGTTCCTATCTCCGTCCAATCGGGGTGGTCTCATGACTGCAATGGT TCTATTGTGGGTTTTTATGGGTTTATTTGCTGGCTACTCCTCAGCACGTTTGTACAAGATGTTCAAGGGCACAGAGTGGA AGAGGAATACCTTAAAAACTGCATTTATGTTTCCAGGCATACTTTTCGCTATCTTCTTTGTGCTGAATGCTTTAATCTGG GGGGAAAAGTCCTCTGGAGCAGTCCCTTTTGGAACAATGTTCGCTCTAGTCTGCCTATGGTTTGGTATTTCAGTGCCCTT GGTCTTTGTGGGCAGTTACTTGGGTTTTAAAAAACCAGCAATTGAAGACCCTGTGAAGACTAATAAAATTCCTAGGCAGG TACCTGAGCAGGCATGGTACATGACACCCGTCTTCTCTATTCTTATTGGTGGCATTCTTCCATTTGGTGCAGTGTTCATC GAGCTCTTCTTTATCCTGACATCAATATGGCTAAACCAGTTCTACTACATCTTTGGCTTCCTTTTCATAGTGTTTGTTAT CCTATTGATCACCTGTGCAGAGATTACGGTTGTGCTTTGCTACTTCCAATTGTGCAGTGAAGACTACAACTGGTGGTGGA GAGCTTACCTTACTGCTGGATCCTCAGCTCTGTACCTCTTCCTTTACTCAATTTTCTATTTCTTCACTAAGTTGGAGATT ACAAAGCTGGTCTCGGGCATCCTTTACTTTGGATATATGGTAATTGGTTCATATGCCTTCTTTGTGTTGACTGGAACTAT TGGCTTCTATGCTTGCTTCTGGTTTGTCCGCAAGATCTACTCTTCTGTGAAGATTGACTGATTACAAGCGCCATATACTG GATGTTACATGACGCTGAACCTGAGGCTGAATGAGAGGACTGGAGGGAAATATTGTTGAGAAAGTGTCCTGCCCCTCCCT TGAAAGCCCTTTTTGTTTGTTAGAGTAGAACTTGCACTGATAATTTGTTGCACTATTTTCGAATTATCGTTGTCGTAGCT TTTGAAGTAATGATGTGATATCTGCATATATTTCCAAATGTCACCATGTATGGTGAGAATGATTGTCGTTAGGACCTGTT TTTGCTGACTCAAAATTCTTGTCGAACTAATATAACTAGGGTCCAATTGTATCCATGCAAGTTTACCTAGTTCATCACTT ACCGGATTTAAAATGGATTTTTATGAACTGTTGAATCTGATTACAGATTTGAGGTGCCCCATAGTACATTTTAAAATTAA GTTTGCTGTCCTGCAAGTAGGATTTACTCAAATGGAAATTTTAAAACATAGCTTTGTTTACACTTTCAAAATTATTTTAT TTCATTAAACAAAAATGACTTTT
CDS sequence (LotjaGi3g1v0425500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGGGTGGCACCGCCGTCTCCGCCCGTTCAACCGCCGCCATCTCCGTCGCTATCCTCCTTCTCATCTCCTCCGCCCA CTCCTTCTACCTCCCCGGCGTTGCTCCTCGCGATTTCCAAACCGGTGATGCCCTTTATGTCAAAGTGAACAAATTATCAT CTACCAAGACTCAACTTCCGTATGACTACTACTACTTGAAGTATTGCAAACCCTCCAAGATTCTGAACAGCGCAGAAAAT TTGGGAGAGGTTCTTCGAGGCGATCGTATTGAAAATTCTATATATACGTTTCACATGAGGAAAGAACAGTCTTGTACTGT TTCTTGTCATCAAATTTTGGATGCTGAAGCTGCGAAGAATTTTAAAGAAAAAATTGATGATGAATATCGAGTGAACATGA TTTTGGATAACCTTCCAGTTGCTGTTCTTAGACAAAGGAGGGATGGAAGTCAATCAACAACATATGAGCATGGTTTTCGT GTTGGGTTCAAGGGAAACTATCAAGGGAGCAAGGAAGAGAAATATTTTATCAATAACCACTTGAGTTTTAGAGTCATGTA TCACAAGGATCCTGAAACTGGTTCTGCTCGCATTGTTGGATTTGAGGTCACACCAAACAGTATTAATCATGAATACAAGG AGTGGAATGACAAAAATCCGCAAGTAACAACATGTAATAAAGATACCAAGAATTTGATGCAAGGTAGTACTGTCCCACAA GAAGTTGATACAGGCAAGGACATCGTATTCACATATGATGTTTCCTTTAAGGAAAGTGATATCAAATGGGCATCACGATG GGACACATATCTTCTAATGAATGATGATCAGATCCACTGGTTTTCTATCATAAACTCTCTGATGATTGTGCTTTTCCTTT CTGGAATGGTGGCAATGATCATGATGAGGACTCTTTACAGAGACATTGCCAATTATAACCAGCTAGAAACCCAAGATGAG GCCCAAGAAGAAACAGGGTGGAAACTTGTTCATGGAGATGTTTTCAGGGCACCAGTCAATTCAAATTTGCTTTGTGTTTA TGTTGGTACTGGTGTTCAGATCTTTGCAATGACACTTGTGACAATGATATTTGCTTTGCTAGGGTTCCTATCTCCGTCCA ATCGGGGTGGTCTCATGACTGCAATGGTTCTATTGTGGGTTTTTATGGGTTTATTTGCTGGCTACTCCTCAGCACGTTTG TACAAGATGTTCAAGGGCACAGAGTGGAAGAGGAATACCTTAAAAACTGCATTTATGTTTCCAGGCATACTTTTCGCTAT CTTCTTTGTGCTGAATGCTTTAATCTGGGGGGAAAAGTCCTCTGGAGCAGTCCCTTTTGGAACAATGTTCGCTCTAGTCT GCCTATGGTTTGGTATTTCAGTGCCCTTGGTCTTTGTGGGCAGTTACTTGGGTTTTAAAAAACCAGCAATTGAAGACCCT GTGAAGACTAATAAAATTCCTAGGCAGGTACCTGAGCAGGCATGGTACATGACACCCGTCTTCTCTATTCTTATTGGTGG CATTCTTCCATTTGGTGCAGTGTTCATCGAGCTCTTCTTTATCCTGACATCAATATGGCTAAACCAGTTCTACTACATCT TTGGCTTCCTTTTCATAGTGTTTGTTATCCTATTGATCACCTGTGCAGAGATTACGGTTGTGCTTTGCTACTTCCAATTG TGCAGTGAAGACTACAACTGGTGGTGGAGAGCTTACCTTACTGCTGGATCCTCAGCTCTGTACCTCTTCCTTTACTCAAT TTTCTATTTCTTCACTAAGTTGGAGATTACAAAGCTGGTCTCGGGCATCCTTTACTTTGGATATATGGTAATTGGTTCAT ATGCCTTCTTTGTGTTGACTGGAACTATTGGCTTCTATGCTTGCTTCTGGTTTGTCCGCAAGATCTACTCTTCTGTGAAG ATTGACTGA
Protein sequence (LotjaGi3g1v0425500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMGGTAVSARSTAAISVAILLLISSAHSFYLPGVAPRDFQTGDALYVKVNKLSSTKTQLPYDYYYLKYCKPSKILNSAEN LGEVLRGDRIENSIYTFHMRKEQSCTVSCHQILDAEAAKNFKEKIDDEYRVNMILDNLPVAVLRQRRDGSQSTTYEHGFR VGFKGNYQGSKEEKYFINNHLSFRVMYHKDPETGSARIVGFEVTPNSINHEYKEWNDKNPQVTTCNKDTKNLMQGSTVPQ EVDTGKDIVFTYDVSFKESDIKWASRWDTYLLMNDDQIHWFSIINSLMIVLFLSGMVAMIMMRTLYRDIANYNQLETQDE AQEETGWKLVHGDVFRAPVNSNLLCVYVGTGVQIFAMTLVTMIFALLGFLSPSNRGGLMTAMVLLWVFMGLFAGYSSARL YKMFKGTEWKRNTLKTAFMFPGILFAIFFVLNALIWGEKSSGAVPFGTMFALVCLWFGISVPLVFVGSYLGFKKPAIEDP VKTNKIPRQVPEQAWYMTPVFSILIGGILPFGAVFIELFFILTSIWLNQFYYIFGFLFIVFVILLITCAEITVVLCYFQL CSEDYNWWWRAYLTAGSSALYLFLYSIFYFFTKLEITKLVSGILYFGYMVIGSYAFFVLTGTIGFYACFWFVRKIYSSVK ID
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 11 | 11 | - | – | |
| Phobius | 1 | 28 | 28 | - | – | |
| SignalP_EUK | 1 | 28 | 28 | - | – | |
| Phobius | 12 | 23 | 12 | - | – | |
| TMHMM | 13 | 35 | 23 | - | – | |
| PANTHER | 14 | 642 | 629 | 0.0 | ||
| PANTHER | 14 | 642 | 629 | 0.0 | – | |
| Phobius | 24 | 28 | 5 | - | – | |
| Phobius | 29 | 277 | 249 | - | – | |
| Pfam | 60 | 598 | 539 | 1.1E-225 | ||
| TMHMM | 278 | 300 | 23 | - | – | |
| Phobius | 278 | 301 | 24 | - | – | |
| SUPERFAMILY | 283 | 464 | 182 | 2.88E-5 | ||
| Phobius | 302 | 343 | 42 | - | – | |
| Phobius | 344 | 370 | 27 | - | – | |
| TMHMM | 344 | 366 | 23 | - | – | |
| CDD | 351 | 613 | 263 | 0.00259484 | – | |
| Phobius | 371 | 375 | 5 | - | – | |
| Phobius | 376 | 395 | 20 | - | – | |
| TMHMM | 376 | 398 | 23 | - | – | |
| Phobius | 396 | 415 | 20 | - | – | |
| Phobius | 416 | 437 | 22 | - | – | |
| TMHMM | 418 | 437 | 20 | - | – | |
| Phobius | 438 | 448 | 11 | - | – | |
| TMHMM | 447 | 469 | 23 | - | – | |
| Phobius | 449 | 472 | 24 | - | – | |
| Phobius | 473 | 492 | 20 | - | – | |
| Phobius | 493 | 526 | 34 | - | – | |
| TMHMM | 501 | 523 | 23 | - | – | |
| Phobius | 527 | 531 | 5 | - | – | |
| Phobius | 532 | 558 | 27 | - | – | |
| TMHMM | 533 | 555 | 23 | - | – | |
| Phobius | 559 | 569 | 11 | - | – | |
| TMHMM | 568 | 590 | 23 | - | – | |
| Phobius | 570 | 591 | 22 | - | – | |
| Phobius | 592 | 602 | 11 | - | – | |
| Phobius | 603 | 632 | 30 | - | – | |
| TMHMM | 610 | 632 | 23 | - | – | |
| Phobius | 633 | 642 | 10 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi3g1v0425500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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