Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0427000 |
| Transcript ID | LotjaGi3g1v0427000.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B; TAIR: AT1G17720.2 Protein phosphatase 2A, regulatory subunit PR55; Swiss-Prot: sp|Q39247|2ABB_ARATH Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform; TrEMBL-Plants: tr|A0A0L9TA33|A0A0L9TA33_PHAAN Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B; Found in the gene: LotjaGi3g1v0427000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:83778642..83784620) extracted from Lotus japonicus Gifu genome v1.2.
ATGGACTATTCAAATGTTGGTAGGCATCCTGAGTTCCGTTACAAAACAGAGTTTCAGAGTCATGAGCCTGAGGTAATTTA TAGTCCCCACTCCCCAGTAATTTGAAGTAACTACCTGTAGCTCATAAATGCTAATATATATGTCATTTGATCATTGTTTC AGTTTGACTATCTTAAGAGCTTGGAAATAGAAGAGAAAATTAACAAAATCAAATGGTGCCAAACAGCTAATGGTGCTCTC TTCCTTTTATCTACAAATGATAAAACAATTAAATATTGGAAGGTATGGAATGAATGCTCAGTTATGGCATGCTGTTTGCT GTTTTTCTTAATCAGTTTTTTTTTGTATGGCAGACATGGATACATTTCTGTAGAACTAAGTTCAGTCCCTTTCTTAAATG CCTTGACAGCATAACTGTTAATGGATACTGGAGCAAGTAGTTGTAGTATGGTAGTTAGCCAGCTTGAGTCATGAGTAACT ACCATATGTATCATGGCTTATGAAGCCCATGTATCTGGGTACTATCGAATCTGTTGCCTGGGTTTCGCCTTTGGAAATAA CCAATTTTTTATAGACAAAATTTTAGTTAACCATATTACACTGCATGTAGAGGGCTATCTTTAGTGCACCTCTACATATA GCTGTTCACTTTCAAATGCATAATTTCATGACTCGCTTATGAACACTTCTATAGTTAGAGGAAATTAGTTAAAACTATTT ATTAATGCAGTTTGTGATCTTGATGGTCCATTGGTTTTGTGATTGTACTATTATACTAAAGGCATTGAGAAGACAGAATT TTGTGAGAAGTAAATATGAAAATGGCTATGCTGTTCAAAAAATTCCCGATGGGATCTGCACGGTGTTTGCTTGTGCATGT ATTCAAAATGAATATGACTATATTTCCTTCAGTAGTTTTTCACATCAATTAAATAGGACTGATATGTCTTCTAGGCCTCT TATTCTTTTTTGCTCTTATCTGAGAATTTAACAGGTTCAAGAAAAGAAGGTCAAAAAAATTACTGACTTGAATGTTGACC CTTCAAAAGCAATGGGAAATGGTTCTATTGCTAGTTCAAGTAATTCCAGTAGCTCTAGGCCATATCTTGCAAATGGAGAG TCTCCAGAAAGATCGCACAGTTATCTAAGCACTGATTTCTCATTTCCACCAGGAGGCATACCTTCGCTAAGATTACCCTT GGTAAATGTATTCAGCTCTCCTATTTGAAGTCTTCTTTTATAGTTCGGTATAAATATTAAGTGTGAATATTTACAATGAA CAACCGAGAAATTAGTGAATTAACACGAAACATACAAAGCTCTGCAATGCATACTATGGACATTTTTTCTGTTTGAATGG AGTCCCGACTTTGTTTTATTTTTTATTTTGGGAGGGGAGGGGAGGGGAGGTTATCCAAAGTGAGATGTAATCTTGTCCTT TTCATGATTCATAATTCATTATATTATGAAGGTATATGTTGAACATACAAGGCCTGGTGCAACTTGGAACTTGCAAGAGA CCTTTTGCAGTTGATTTCGTCATAGTTGTTAAGGTCTTTTAAAAAAAGAAACTGAAATTTCATTAAAGATGTGAAAGAGT AAAAGCATCATGCTGGTAGTTGATATCAAAAGTAGTCCTTAAGTAGGCAGAGGTAAAGAACCAAATCCCTATATTAAGTC ACTGAGATAGTTTTAAAACTTGGCTCGAATCGGCTGGTTTGTAAGCTAGCTGGGAAACTTATCCAAGTGGCATTTTAGTC CGGTTCTATTTAAGAAGTGGTGTGACTCAATTTGACTTCGCCGGGTTTCAAAAAAACTGGTGACTCGGCCTGGTTAACTT GGTCAAAAAACGGGTTGACTAGGCCAACTTCTGTATTTATCAAAACAAATTTTGTATTTTACTTGTAATGAAAGGAAAAA ACTAAAAAAGGCTTATGGCATTGTAAAGGTAAAAGATATTTGACTCCTTTTTAGCATAATATAATTGTGTTTTTGTATTC TTATAATTATAATTTGGTCTTGCACAATATATTAAACCTTGATAATTTACTTGTATTTTTACCTAACGACTCAACCGGGC TGAGTTAATAACTGGTTTCATTGATCTTGATAATGAAGGCTGAAAAAGAGACAGAATACAAGTAAACACATTTTTACCTA GGTAGAATTTTTAGCCTCGTTTGTGGACTCCTTGATAATGAAGGCTGAAAAAGAGACGGAAACAGAAAGACAAACATTGA TCTTTGATTTATTGTTGTGATTGTTCCATCCTTGTAGTTGTAGTGTTTATTTATGTATATTCTCGATAGATTATACAAGA GGGCGGAGAGGAAAGGGGTTACAGTTCTAAGCTTCTTTCTCAAACCTTGACAATTACATGTTTGAGATTTTGTAGTATGC TAGTGCTAACATATGGGTTGTATGTATACGTAGGTAACCAGCCATGAGACCAGTCTGTTGGCTCGTTGTCGTCGAGTGTA TGCACATGCTCATGATTATCATATCAATTCTATTTCCAATAACAGGTGATTTTAGTTTTGTTATTGACAGATTGTGTACC GTATTTTTCTTTGTATTAAATTTTAGGTGCTGCTGAGAAACCATCTGGGTCCATAGTGTAGGCTGTCCAGTATCAAATCT TACGTTTTCGTTATATTTTTGTTCTCTTCATTTAGTGTCGATTTGAAAATGCTAATTAGTTTTCTTTCTCAAGTGTTGTT TCATATCTGCACGATTTTGTGTTCTTGTTTTTGTTATTGTATGCTTTTCTAATATCTGATCGCATTTCGATTATGGTATG TTTCAATATCTTCTAGCGATGGCGAAACTTTCATATCAGCTGATGATTTGCGAATAAATCTTTGGAACCTTGAAATTAGC AACCAAAGTTTTAATATTGTTGATGTAAAGCCTGCAAATATGGAGGATCTAACTGGTAAGCTCTTACTATTATGTTATAT TTTGTGCTGAAAATATTTCTCTGTTGGTAACTTGGAAAAATTTCATTTCAAAAAAAGAACTTGGAAAATTCATGTAATTG AGTAAGGATAACAGCTTAGAAGTTAGTGTTTTATGTTCATTTTGCATGTATAAATCTTTCATCTCTGTGATGTTGAACGA CAGTAAGATTAGGATTTAAATCACAATCAGGGTTATCTGGGTGAATCAAGGGTAGATAACAAGTGACTTGAAGGTTCTTG GGTGCATATTTTGTTAAGGGATATTTGCAAGCAATTGGATGGGTTTTTTATGGTCGATTGATGGCTGTTTAGTTGCTGTG ACCATTACCTGCGTATTTATTGTTGGGGATTTGATGAGTGTTAGGAACAATTGAAGTAAGAATCAACTATTGCTTTGATG GGTTGGAATTTTTATGTCATTTGGCGAAGAAATTTGAACTTTGCAATTATTCCTCTGGATTTGATTGCACCGCAACCTGT CAGACAGCAATGTGCTGCCATACTTTCATAAGTCTGATCTTCTGTTTAAAAGAAAGCATTATGCTTGTTTGAATAAAGCT TGTATAACTCATCCCGCAAGAATGACGAATAAGATCCGAAACCAATAAGCATGAAGAGTCCATCCTACTACTACTGTACG GTGTAGGAAAATGCGCCAAAATAATGTGCTTCAGGCTTTTACTTACGGTGCCAGATCCAAGAAGGATTCAGTGCCTCCTG AGCCTAAGGGTGCGTTTGCGAGTTGAGTTTTGGAGGAGTGGGTAGGGAAGGGAAGAGAGAGGCTTCCAAGAAGCCCTCCC CTTGTTTGTGAGTTTTTAAGAAGGGGGGAAGGGTTTGGGGAATTTTTGAATACCCTCCAAGACCCTCTCTTAGTTATATT TTCTAGTTCCCCCAAGTTGGGGGTTTTGGACTTTCAAACAAGGGAAGGGCTTTCCCTCCTTCCCCCCTCTCCTCCCCTAA AAACTCAGAAACACACCCTAAGGCATGCCTGTATCCCTGTAGTAGCTAATTGATAACTTTAACCTTGCCCCCTCCCACCA CTCTCACTCAAACACAAAAAGGTAAGGTGGAGATAATTAGAACAATAGAATGTAAAAAAAAGTATAAATAGTTATTTTGG ATGGGGTTTTGTGAACACCTCTGGAATTTCTTATATGTTTTCTAATATTTCTTTTGGCTTGATTCTTTTCTTCTAGTGTT GGTTGAGCTTTGACCGTAGGTATTATTATTATTTCAGAGGTTATAACATCAGCGGAATTTCACCCTACACATTGTAATAC ATTAGCGTATAGCAGTTCAAAGGGTTCAATTCGTCTGATTGACTTGCGGCAGTCAGCCTTATGTGATTCTCATGCCAAAC TGTAAGCTCATCTTTTGTGAACGTGTCATGCTTGTCTATTTCTGTTATGTTAGACCGAATAAGTTTTGGAGATAATTTGG AAATCAAAATGTTCCCTATGGAAAAAAAAAAGCACTTTTCTGAAGCCTAGTATGTAAATATGTATGTAAGTAATTTCTTA TGCCTAGTAGTCTCACAGACAATTACCTTCTCAACAGATTTGAGGAGCAGGAGGCCCCAGGGTCTAGATCATTTTTCACA GAGATTATTGCTTCTATCTCAGACATAAAATTTGCAAAGGATGGAAGATATATACTCAGTCGTGATTATATGACTCTAAA GGTTTGAAATCATTATCATTACAAAATTATGCTTTTGTCACCTAAACTTTTCTGAGTATTTTGGATGTAGATACTTCAAA TGTGTTGAATTGAAATGAGACATGGGACATGGGTATCTTATCTCAACGAATTGTTGCTTATGGTGAAAGGGATCCCAAGT TTAATTGGATGTTGAAAATTTGGTTTGGTTGTTGAATCCCATGAGCAAAATTGATATTTAAATTAAAACTATCTGTTCCG TGGACTTTCAGTTATTGTTGATGGTTACAATAACACACAGCATTCTGTCATTTAAAAGTTGTTTGGGTCTTGTGCGTTAT GCTCTAAATTTCTCAAGCCCCATCTCATTTTACTTTACTTGTTTGTCAGTTATGGGACATCAACATGGATTCAGGCCCAG TTGCAACGTTCCAGGTTCATGAGTATTTAAGGCCAAAGGTAGAATTCTTCTAGATTAGCGATGAGCTATGAATTTCTGCT GCTTTATTGAATTATAATAATAACTGGCTTTTTTATTTGGAATTTGCAGCTTTGTGATTTATATGAAAACGATTCAATTT TTGACAAGTTTGAGTGTTGTCTGAGTGGTGATGGATCACGTGTTTCAACTGGTTCTTACAGGTCCCTAATTCAAACTTCA TCTGTGATTTTGTTAACTTTGAATTCTGCATCTTACTATTTGTTTCCTTTGATGCCAGCAATCTATTCCGTGTGTTTGGT TGTGCCCCGGGAAGTACTGAGGCTACGACTTTGGAAGCCAGTAAAAATCCAATGAGGTAATTTTATATTGGAAGTTCTAA CACCAGCTATAAATTAGTTCAGCATTGTGGCATTTATATGATTTTTTTTTTTCATCTCCTCAGGCGACAAGTTCCAACTC CTTCAAGGCCTGCTAGATCACTGGGGAACAGTATAACTAGAGTTGTAAGACGTGGTAAGTTTTCTATCTGACAAACTTGA TTAACTGGAGTTTTCATCATATAGGGTGCGGTTGGGGAAACAACTTAATTAAGCGTTTATCGCCTAAGCACTTGTTCATA AGCTATTTTGAAAAACTTATTGAAATAAGGTTAAAAATAGGTTATAAGTAAGCTAAGCTCTCTCAAACACCTGCACAAGT TTTTATACTATAAACTTAAATGAGCTCTTACTAAAGGGGCCATAATCTTGTTCTCACAACAATTTTATAAAATCTTGAAC AGGAGCTGAAAGCTCTGGTGTTGATGCAAATGGGAATTCTTTTGATTTCACGACAAAGTTGCTGCACTTGGCGTGGCACC CAACTGAAAATTCAATTGCTTGCGCTGCTGCGAATAGCTTATACATGTACTATGCTTGA
CDS sequence (LotjaGi3g1v0427000.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACTATTCAAATGTTGGTAGGCATCCTGAGTTCCGTTACAAAACAGAGTTTCAGAGTCATGAGCCTGAGTTTGACTA TCTTAAGAGCTTGGAAATAGAAGAGAAAATTAACAAAATCAAATGGTGCCAAACAGCTAATGGTGCTCTCTTCCTTTTAT CTACAAATGATAAAACAATTAAATATTGGAAGGTTCAAGAAAAGAAGGTCAAAAAAATTACTGACTTGAATGTTGACCCT TCAAAAGCAATGGGAAATGGTTCTATTGCTAGTTCAAGTAATTCCAGTAGCTCTAGGCCATATCTTGCAAATGGAGAGTC TCCAGAAAGATCGCACAGTTATCTAAGCACTGATTTCTCATTTCCACCAGGAGGCATACCTTCGCTAAGATTACCCTTGG TAACCAGCCATGAGACCAGTCTGTTGGCTCGTTGTCGTCGAGTGTATGCACATGCTCATGATTATCATATCAATTCTATT TCCAATAACAGCGATGGCGAAACTTTCATATCAGCTGATGATTTGCGAATAAATCTTTGGAACCTTGAAATTAGCAACCA AAGTTTTAATATTGTTGATGTAAAGCCTGCAAATATGGAGGATCTAACTGAGGTTATAACATCAGCGGAATTTCACCCTA CACATTGTAATACATTAGCGTATAGCAGTTCAAAGGGTTCAATTCGTCTGATTGACTTGCGGCAGTCAGCCTTATGTGAT TCTCATGCCAAACTATTTGAGGAGCAGGAGGCCCCAGGGTCTAGATCATTTTTCACAGAGATTATTGCTTCTATCTCAGA CATAAAATTTGCAAAGGATGGAAGATATATACTCAGTCGTGATTATATGACTCTAAAGTTATGGGACATCAACATGGATT CAGGCCCAGTTGCAACGTTCCAGGTTCATGAGTATTTAAGGCCAAAGCTTTGTGATTTATATGAAAACGATTCAATTTTT GACAAGTTTGAGTGTTGTCTGAGTGGTGATGGATCACGTGTTTCAACTGGTTCTTACAGCAATCTATTCCGTGTGTTTGG TTGTGCCCCGGGAAGTACTGAGGCTACGACTTTGGAAGCCAGTAAAAATCCAATGAGGCGACAAGTTCCAACTCCTTCAA GGCCTGCTAGATCACTGGGGAACAGTATAACTAGAGTTGTAAGACGTGGAGCTGAAAGCTCTGGTGTTGATGCAAATGGG AATTCTTTTGATTTCACGACAAAGTTGCTGCACTTGGCGTGGCACCCAACTGAAAATTCAATTGCTTGCGCTGCTGCGAA TAGCTTATACATGTACTATGCTTGA
Protein sequence (LotjaGi3g1v0427000.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDYSNVGRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIKWCQTANGALFLLSTNDKTIKYWKVQEKKVKKITDLNVDP SKAMGNGSIASSSNSSSSRPYLANGESPERSHSYLSTDFSFPPGGIPSLRLPLVTSHETSLLARCRRVYAHAHDYHINSI SNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNTLAYSSSKGSIRLIDLRQSALCD SHAKLFEEQEAPGSRSFFTEIIASISDIKFAKDGRYILSRDYMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIF DKFECCLSGDGSRVSTGSYSNLFRVFGCAPGSTEATTLEASKNPMRRQVPTPSRPARSLGNSITRVVRRGAESSGVDANG NSFDFTTKLLHLAWHPTENSIACAAANSLYMYYA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 434 | 434 | 1.3E-286 | – | |
| PANTHER | 1 | 434 | 434 | 1.3E-286 | ||
| PIRSF | 2 | 434 | 433 | 2.1E-175 | ||
| PRINTS | 11 | 39 | 29 | 1.1E-147 | ||
| SUPERFAMILY | 19 | 426 | 408 | 2.75E-29 | ||
| ProSitePatterns | 24 | 38 | 15 | - | ||
| SMART | 24 | 64 | 41 | 21.0 | ||
| PRINTS | 40 | 68 | 29 | 1.1E-147 | ||
| MobiDBLite | 84 | 109 | 26 | - | – | |
| SMART | 142 | 181 | 40 | 0.92 | ||
| Pfam | 145 | 181 | 37 | 0.11 | ||
| ProSitePatterns | 151 | 165 | 15 | - | ||
| PRINTS | 153 | 180 | 28 | 1.1E-147 | ||
| ProSitePatterns | 168 | 182 | 15 | - | ||
| PRINTS | 181 | 208 | 28 | 1.1E-147 | ||
| SMART | 192 | 232 | 41 | 11.0 | ||
| PRINTS | 209 | 237 | 29 | 1.1E-147 | ||
| PRINTS | 238 | 265 | 28 | 1.1E-147 | ||
| SMART | 251 | 289 | 39 | 250.0 | ||
| PRINTS | 266 | 293 | 28 | 1.1E-147 | ||
| PRINTS | 294 | 319 | 26 | 1.1E-147 | ||
| PRINTS | 320 | 346 | 27 | 1.1E-147 | ||
| PRINTS | 403 | 432 | 30 | 1.1E-147 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Protein phosphatase type 2A complex | A protein complex that has protein serine/threonine phosphatase activity that is polycation-stimulated (PCS), being directly stimulated by protamine, polylysine, or histone H1; it constitutes a subclass of several enzymes activated by different histones and polylysine, and consists of catalytic, scaffolding, and regulatory subunits. The catalytic and scaffolding subunits form the core enzyme, and the holoenzyme also includes the regulatory subunit. | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Protein phosphatase regulator activity | Modulates the activity of a protein phosphatase, an enzyme which catalyzes of the removal of a phosphate group from a protein substrate molecule. |
Expression pattern of LotjaGi3g1v0427000.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…