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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0484200 |
| Transcript ID | LotjaGi3g1v0484200.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Leucine--tRNA ligase; TAIR: AT1G09620.1 ATP binding/leucine-tRNA ligases/aminoacyl-tRNA ligase; Swiss-Prot: sp|F4I116|SYLC_ARATH Leucine--tRNA ligase, cytoplasmic; TrEMBL-Plants: tr|I1J9U5|I1J9U5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0484200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:90145578..90149348) extracted from Lotus japonicus Gifu genome v1.2.
CTGCTTCTCTATCTCCCTTGTTATGTTGATTAGTCGCTGCCACGCTCAGTTGCAAACTTCAGTGACACACAGGTTCAATT TTCGTTCTTGTCTCATTCGTGCATCTTAGGTTATCTGTTGCGGATCTAACAACATTTTCGTACGTTGTTTCTTTCGTGCG CAGTTGTCGTCGCTTTTTCACAGACATGGCAAGCGAGGGTGGCGGCGGCGCCGGGAAAAGCTTCGCTCGGAGGGATCGTC TGAGGGAGATTGAAGCCAAGGTTCAGAAATGGTGGGAAGACGGCCAAGTTTTCAAGTCAGAACCCGGCGACGCGCCGCCG AAGCCCGGCGAGAAGTTCTTCGGTAACTTCCCTTTCCCTTACATGAACGGTTACCTCCATTTGGGTCACGCGTTTTCACT CTCCAAGCTCGAGTTCGCCGCCGCTTTCCACAGGCTGAGAGGCGCCAATGTCCTCCTCCCCTTCGCCTTCCACTGCACCG GCATGCCCATCAAAGCCTCCGCCGATAAGCTCGCCAGGGAGATCCAGTGCTTCGGGGATCCACCGGTTTTTCCTCAGGAA GAACCAGAACAAGAAGAAGCACCAGAGCAACAAGATGATGCAAATGAAGGTGGTGCTCCTGGGAAATTCAAAGGGAAGAA GTCTAAAGCTGCTGCTAAAACTGGCACACAGGTGTATCAATGGGAGATTATGAGAAGTGTTGGAATTTCTGATGATGAGA TTTCAAAGTTTCAGGATCCTTACAAGTGGCTTTCTTATTTCCCTCCTTTGGCTGTGGAGGATCTCAAGGCTTTTGGGTTG GGTTGTGATTGGAGAAGATCTTTTATTACTACAGACATGAACCCTTATTTTGATTCCTTTGTTAGGTGGCAGGTGAGGAA GTTGAAGTCCATGGGCAAGATTGTGAAGGATGTTAGGTATACCATATTTTCTCCTCTTGATGGACAACCCTGTGCTGATC ATGATAGAGCATCTGGTGAAGGTGTTCAGCCTCAAGAGTATACTGTTATTAAGATGGAGTTGATTGCACCTTTTCCTTCT AAATTCGAAGTGCTGGAGGGGAAGAAGGTGTTTCTTGCTGCTGCAACTTTGAGGCCTGAGACAATGTATGGGCAAACTAA TGCTTGGGTTTTGCCTGATGGGAAATATGGGGCATTTGAAATCAATGAGACTGAGGTGTTTGTTATGGCACATAGAGCAG CACTTAACCTGGCCTACCAGAACCACTCTAGAGTCCCTGAGAAACCCACTTGCTTGCTTGAGCTAACGGGTCATGACTTG ATTGGCCTGCCATTGAGATCGCCGCTTTCGTTTAATGATACCATTTATGCACTTCCTATGCTGTCTATTTTGATGGATAA AGGTACTGGGGTTGTGACCAGTGTGCCTAGTGATGCTCCTGATGACTACATGGCCTTGCATGATTTGAAGTCAAAGCCAG CATTCAGGGCTAAGTTTGGTGTGAAGGATGAATGGGTGATGCCTTTTGAGATTGTGCCCATCATTGAAGTTCCCGAGTTT GGAAATAAGTGCGCGGAGACAGTTTGCTTGCAGATGAAAATCAAGAGTCAGAATGAGAAAGAGAAGCTTGCAGAAGCCAA GAAGCAAACTTACTTGAAAGGATTCACTGAAGGAACAATGATTGTTGGAGAATTCGCAGGGAAGAAAGTTCAGGAAGCTA AACCCTTGATTAGGAGCAAGCTTTTGGAAATTGGTCAGTATTCATCATCACGTTATTGTTTTTAATATATGTATATCAAT CTTATTATTCTTATTCATGTCAGAATTGATTAAGATTTGCTTCTACTTCCTGCTTAATTCAATTATCTTTGGTTAAATTC TTCAAAATATTATAGCAACATATGATTATTAGATAATAATATGAAACAGCTTTGTGCTAATAATAAACCAAAATTTATTA TACTTTTATTGTTAAATATAAATACTGAACAAATTCTTTTACTCATATGCATGTATCCTCGTTGGTCATCTCGCTCCCAA TGCTTGAAATTTTGTTTCCATACTTTCAGGTCAGGCTATTGTGTACAGTGAGCCAGAGAAACGGGTGATGTCAAGATCTG GTGATGAGTGTGTTGTAGCTTTGACAGATCAGTGGTACATTACATATGGGGAATCAGAATGGCAGAAGTTAGCTGAGGAA TGCTTGTCTAGCATGAGCTTGTTTTCTGATGAGACAAGACATGGGTTTGAGCATACTTTAAGCTGGTTGAACCAGTGGGC TTGCTCACGATCATTTGGTCTTGGGACACGCATACCATGGGATGAACAGTTCCTGGTTGAGTCATTATCAGATTCCACCA TTTACATGGCTTATTACACTGTTGTGCATTATTTGCAGAATGGTGACATGTATGGCTCCAGCCAATCTTCTATCAAACCT CAACAGCTGACTGATGATGTCTGGGATTATATTTTCTGTGATGGGCCTTTCCCTAAGTCCACTGATATTTCATCGTCACT TTTAGAGAAAATGAAAAAGGAATTTGAGTATTGGTATCCATTTGATCTTCGAGTGTCCGGTAAGGATCTCATCCAGAATC ATCTTACCTTCTGCATTTACAACCACACTGCAATTATGTCCAAGCATCACTGGCCTCGTGGGTTTAGATGCAATGGTCAT ATAATGCTCAACAACAACAAAATGTCCAAGTCTACTGGAAATTTCAGGACTATTCGCCAAGCAATTGAGGAGTTCTCTGC CGATGCTACTCGATTCTCTTTGGCTGATGCTGGTGATGGTGTTGATGATGCAAATTTTGTCTTTGAGACAGCAAATGCTG CAATTCTTGGACTCACCAAAGAGATTGCATGGTATGAAGAGATTCTGGCAGCAGAATCTTCTATGAGAACTGGTCCCCCA TCTACTTATGCTGATCGCGTGTTTGCCAATGAGATTAACATTGCTGTCAAAACAACTGAGCAAAATTACTCCAACTACAT GTTTCGAGAAGCCCTCAAGACCGGATTTTATGGTCTTCAGACTGCTAGGGATGAGTATAGGTTCTCATGTGGGGTTGGAG GTTACAATCGTGAGTTGGTGTGGCGTTTTATGGATGTGCAGACACGTCTTCTGGCACCGATCTGTCCACATTATGCCGAG TTTATTTGGAGAGAGCTTTTGAAGAAGGATGGTTTTGTAGTGAAGGCAGGCTGGCCAACAGCGGATGCTCCTGATCTTAC ACTAAAGAGTGCCAATGAATATCTGCAGGAATCTATTGGTATGATGAGGAAGTTGCTTCAGAAGCAACTTTCAGGCTCAA AGAAAGCAAGTAAGAAAGGTGCTCCAGTTGCATCAGTGGCAGAAAACAAGGTAACAGGCTTGGTATATGTAAATGAACAA TTTGATGGTTGGAAAGCTGAGTGCCTGAACATTCTCCAGAACAAATTTAACAAAGATACTCGAACTTTTGCTCCAGACTC AGAGATATTGGAGGCTTTACAACATAGTTCGGTAGGCCAGTCTTCTAATTTTAAACAAACTCAAAAGCAATGTATGCCTT TCTTGAGGTTTCAGAAGGAGCAAGCCATTAAACTCGGGGCTCAAGCACTGGATTTGAGATTGCCATTTGGTGAGATTGAG GTTCTTCAGGAAAACTTGGACTTGATTAAGAGACAGATAAATCTAGAACATGTGGAAATTTTATCTGCAGCAGATGCTGA TTCTTTGGCGAAAGCTGGACCCTTAGCTTCTCTTCTAAATCAAAATCCTCCATCCCCAGGAAAGCCAACTGCCATCTTTT TAACTCAGTAG
CDS sequence (LotjaGi3g1v0484200.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGATTAGTCGCTGCCACGCTCAGTTGCAAACTTCAGTGACACACAGTTGTCGTCGCTTTTTCACAGACATGGCAAG CGAGGGTGGCGGCGGCGCCGGGAAAAGCTTCGCTCGGAGGGATCGTCTGAGGGAGATTGAAGCCAAGGTTCAGAAATGGT GGGAAGACGGCCAAGTTTTCAAGTCAGAACCCGGCGACGCGCCGCCGAAGCCCGGCGAGAAGTTCTTCGGTAACTTCCCT TTCCCTTACATGAACGGTTACCTCCATTTGGGTCACGCGTTTTCACTCTCCAAGCTCGAGTTCGCCGCCGCTTTCCACAG GCTGAGAGGCGCCAATGTCCTCCTCCCCTTCGCCTTCCACTGCACCGGCATGCCCATCAAAGCCTCCGCCGATAAGCTCG CCAGGGAGATCCAGTGCTTCGGGGATCCACCGGTTTTTCCTCAGGAAGAACCAGAACAAGAAGAAGCACCAGAGCAACAA GATGATGCAAATGAAGGTGGTGCTCCTGGGAAATTCAAAGGGAAGAAGTCTAAAGCTGCTGCTAAAACTGGCACACAGGT GTATCAATGGGAGATTATGAGAAGTGTTGGAATTTCTGATGATGAGATTTCAAAGTTTCAGGATCCTTACAAGTGGCTTT CTTATTTCCCTCCTTTGGCTGTGGAGGATCTCAAGGCTTTTGGGTTGGGTTGTGATTGGAGAAGATCTTTTATTACTACA GACATGAACCCTTATTTTGATTCCTTTGTTAGGTGGCAGGTGAGGAAGTTGAAGTCCATGGGCAAGATTGTGAAGGATGT TAGGTATACCATATTTTCTCCTCTTGATGGACAACCCTGTGCTGATCATGATAGAGCATCTGGTGAAGGTGTTCAGCCTC AAGAGTATACTGTTATTAAGATGGAGTTGATTGCACCTTTTCCTTCTAAATTCGAAGTGCTGGAGGGGAAGAAGGTGTTT CTTGCTGCTGCAACTTTGAGGCCTGAGACAATGTATGGGCAAACTAATGCTTGGGTTTTGCCTGATGGGAAATATGGGGC ATTTGAAATCAATGAGACTGAGGTGTTTGTTATGGCACATAGAGCAGCACTTAACCTGGCCTACCAGAACCACTCTAGAG TCCCTGAGAAACCCACTTGCTTGCTTGAGCTAACGGGTCATGACTTGATTGGCCTGCCATTGAGATCGCCGCTTTCGTTT AATGATACCATTTATGCACTTCCTATGCTGTCTATTTTGATGGATAAAGGTACTGGGGTTGTGACCAGTGTGCCTAGTGA TGCTCCTGATGACTACATGGCCTTGCATGATTTGAAGTCAAAGCCAGCATTCAGGGCTAAGTTTGGTGTGAAGGATGAAT GGGTGATGCCTTTTGAGATTGTGCCCATCATTGAAGTTCCCGAGTTTGGAAATAAGTGCGCGGAGACAGTTTGCTTGCAG ATGAAAATCAAGAGTCAGAATGAGAAAGAGAAGCTTGCAGAAGCCAAGAAGCAAACTTACTTGAAAGGATTCACTGAAGG AACAATGATTGTTGGAGAATTCGCAGGGAAGAAAGTTCAGGAAGCTAAACCCTTGATTAGGAGCAAGCTTTTGGAAATTG GTCAGGCTATTGTGTACAGTGAGCCAGAGAAACGGGTGATGTCAAGATCTGGTGATGAGTGTGTTGTAGCTTTGACAGAT CAGTGGTACATTACATATGGGGAATCAGAATGGCAGAAGTTAGCTGAGGAATGCTTGTCTAGCATGAGCTTGTTTTCTGA TGAGACAAGACATGGGTTTGAGCATACTTTAAGCTGGTTGAACCAGTGGGCTTGCTCACGATCATTTGGTCTTGGGACAC GCATACCATGGGATGAACAGTTCCTGGTTGAGTCATTATCAGATTCCACCATTTACATGGCTTATTACACTGTTGTGCAT TATTTGCAGAATGGTGACATGTATGGCTCCAGCCAATCTTCTATCAAACCTCAACAGCTGACTGATGATGTCTGGGATTA TATTTTCTGTGATGGGCCTTTCCCTAAGTCCACTGATATTTCATCGTCACTTTTAGAGAAAATGAAAAAGGAATTTGAGT ATTGGTATCCATTTGATCTTCGAGTGTCCGGTAAGGATCTCATCCAGAATCATCTTACCTTCTGCATTTACAACCACACT GCAATTATGTCCAAGCATCACTGGCCTCGTGGGTTTAGATGCAATGGTCATATAATGCTCAACAACAACAAAATGTCCAA GTCTACTGGAAATTTCAGGACTATTCGCCAAGCAATTGAGGAGTTCTCTGCCGATGCTACTCGATTCTCTTTGGCTGATG CTGGTGATGGTGTTGATGATGCAAATTTTGTCTTTGAGACAGCAAATGCTGCAATTCTTGGACTCACCAAAGAGATTGCA TGGTATGAAGAGATTCTGGCAGCAGAATCTTCTATGAGAACTGGTCCCCCATCTACTTATGCTGATCGCGTGTTTGCCAA TGAGATTAACATTGCTGTCAAAACAACTGAGCAAAATTACTCCAACTACATGTTTCGAGAAGCCCTCAAGACCGGATTTT ATGGTCTTCAGACTGCTAGGGATGAGTATAGGTTCTCATGTGGGGTTGGAGGTTACAATCGTGAGTTGGTGTGGCGTTTT ATGGATGTGCAGACACGTCTTCTGGCACCGATCTGTCCACATTATGCCGAGTTTATTTGGAGAGAGCTTTTGAAGAAGGA TGGTTTTGTAGTGAAGGCAGGCTGGCCAACAGCGGATGCTCCTGATCTTACACTAAAGAGTGCCAATGAATATCTGCAGG AATCTATTGGTATGATGAGGAAGTTGCTTCAGAAGCAACTTTCAGGCTCAAAGAAAGCAAGTAAGAAAGGTGCTCCAGTT GCATCAGTGGCAGAAAACAAGGTAACAGGCTTGGTATATGTAAATGAACAATTTGATGGTTGGAAAGCTGAGTGCCTGAA CATTCTCCAGAACAAATTTAACAAAGATACTCGAACTTTTGCTCCAGACTCAGAGATATTGGAGGCTTTACAACATAGTT CGGTAGGCCAGTCTTCTAATTTTAAACAAACTCAAAAGCAATGTATGCCTTTCTTGAGGTTTCAGAAGGAGCAAGCCATT AAACTCGGGGCTCAAGCACTGGATTTGAGATTGCCATTTGGTGAGATTGAGGTTCTTCAGGAAAACTTGGACTTGATTAA GAGACAGATAAATCTAGAACATGTGGAAATTTTATCTGCAGCAGATGCTGATTCTTTGGCGAAAGCTGGACCCTTAGCTT CTCTTCTAAATCAAAATCCTCCATCCCCAGGAAAGCCAACTGCCATCTTTTTAACTCAGTAG
Protein sequence (LotjaGi3g1v0484200.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLISRCHAQLQTSVTHSCRRFFTDMASEGGGGAGKSFARRDRLREIEAKVQKWWEDGQVFKSEPGDAPPKPGEKFFGNFP FPYMNGYLHLGHAFSLSKLEFAAAFHRLRGANVLLPFAFHCTGMPIKASADKLAREIQCFGDPPVFPQEEPEQEEAPEQQ DDANEGGAPGKFKGKKSKAAAKTGTQVYQWEIMRSVGISDDEISKFQDPYKWLSYFPPLAVEDLKAFGLGCDWRRSFITT DMNPYFDSFVRWQVRKLKSMGKIVKDVRYTIFSPLDGQPCADHDRASGEGVQPQEYTVIKMELIAPFPSKFEVLEGKKVF LAAATLRPETMYGQTNAWVLPDGKYGAFEINETEVFVMAHRAALNLAYQNHSRVPEKPTCLLELTGHDLIGLPLRSPLSF NDTIYALPMLSILMDKGTGVVTSVPSDAPDDYMALHDLKSKPAFRAKFGVKDEWVMPFEIVPIIEVPEFGNKCAETVCLQ MKIKSQNEKEKLAEAKKQTYLKGFTEGTMIVGEFAGKKVQEAKPLIRSKLLEIGQAIVYSEPEKRVMSRSGDECVVALTD QWYITYGESEWQKLAEECLSSMSLFSDETRHGFEHTLSWLNQWACSRSFGLGTRIPWDEQFLVESLSDSTIYMAYYTVVH YLQNGDMYGSSQSSIKPQQLTDDVWDYIFCDGPFPKSTDISSSLLEKMKKEFEYWYPFDLRVSGKDLIQNHLTFCIYNHT AIMSKHHWPRGFRCNGHIMLNNNKMSKSTGNFRTIRQAIEEFSADATRFSLADAGDGVDDANFVFETANAAILGLTKEIA WYEEILAAESSMRTGPPSTYADRVFANEINIAVKTTEQNYSNYMFREALKTGFYGLQTARDEYRFSCGVGGYNRELVWRF MDVQTRLLAPICPHYAEFIWRELLKKDGFVVKAGWPTADAPDLTLKSANEYLQESIGMMRKLLQKQLSGSKKASKKGAPV ASVAENKVTGLVYVNEQFDGWKAECLNILQNKFNKDTRTFAPDSEILEALQHSSVGQSSNFKQTQKQCMPFLRFQKEQAI KLGAQALDLRLPFGEIEVLQENLDLIKRQINLEHVEILSAADADSLAKAGPLASLLNQNPPSPGKPTAIFLTQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 34 | 1112 | 1079 | 0.0 | – | |
| PANTHER | 34 | 1112 | 1079 | 0.0 | ||
| SUPERFAMILY | 43 | 789 | 747 | 4.59E-95 | – | |
| TIGRFAM | 45 | 1081 | 1037 | 3.3E-272 | ||
| Pfam | 50 | 132 | 83 | 3.0E-7 | ||
| ProSitePatterns | 82 | 93 | 12 | - | ||
| MobiDBLite | 142 | 178 | 37 | - | – | |
| Pfam | 216 | 782 | 567 | 1.9E-31 | ||
| SUPERFAMILY | 310 | 544 | 235 | 5.32E-29 | ||
| Coils | 478 | 498 | 21 | - | – | |
| CDD | 557 | 785 | 229 | 5.12907E-68 | – | |
| CDD | 783 | 903 | 121 | 1.29834E-42 | – | |
| Gene3D | 795 | 903 | 109 | 5.7E-8 | – | |
| SUPERFAMILY | 816 | 952 | 137 | 4.8E-20 | ||
| Pfam | 822 | 944 | 123 | 1.3E-14 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleotide binding | Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. | ||
| Molecular function | Aminoacyl-tRNA editing activity | The hydrolysis of an incorrectly aminoacylated tRNA. | ||
| Molecular function | Aminoacyl-tRNA ligase activity | Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP. | ||
| Molecular function | Leucine-tRNA ligase activity | Catalysis of the reaction: L-leucine + ATP + tRNA(Leu) = AMP + diphosphate + 2 H(+) + Leu-tRNA(Leu). | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | TRNA aminoacylation for protein translation | The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA and the alpha carboxylic acid group of an amino acid, to be used in ribosome-mediated polypeptide synthesis. | ||
| Biological process | Leucyl-tRNA aminoacylation | The process of coupling leucine to leucyl-tRNA, catalyzed by leucyl-tRNA synthetase. The leucyl-tRNA synthetase is a class-I synthetase. The activated amino acid is transferred to the 2'-OH group of a leucine-accetping tRNA. The 2'-O-aminoacyl-tRNA will ultimately migrate to the 3' position via transesterification. |
Expression pattern of LotjaGi3g1v0484200.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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