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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0520900 |
| Transcript ID | LotjaGi3g1v0520900.9 |
| Related isoforms 9 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Rac-like GTP-binding protein; TAIR: AT4G35020.1 RAC-like 3; Swiss-Prot: sp|O04369|RAC1_LOTJA Rac-like GTP-binding protein RAC1; TrEMBL-Plants: tr|X4YFE3|X4YFE3_LOTJA ROP5; Found in the gene: LotjaGi3g1v0520900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:93721569..93724289) extracted from Lotus japonicus Gifu genome v1.2.
ATGAGTGCTTCCAGGTTCATCAAGTGTGTCACTGTTGGTGATGGTGCGGTCGGCAAAACTTGTATGCTTATCTCCTACAC CAGCAACACTTTCCCTACGGTGAGTCTTTCTCTGATCAAAATTCAATTGCTCTTTGCTTCACACAAAGAAAGCTTGTTTT TTTATGTTGCTGGGTTTTGAATTGGGATGGAAAATTGGAAATGCATGTGAGTAAGCTATGGGTTTGCTTGCTTGTAATTT TGGTTCCTTGTGTTTTGTTGATTCTGTTGCCTGAACCAATTTTCATTTTGAGTTTCTGATGCTAAACTTTGTTCAAATTA GATTAAAGTTGGGATTTTTCTATCAATCAAAGATACCCTTCTTAGACTAGCCTGTGTGAAATTCATTGGGTGGAAAGAGG AAAAGAGGGATTTTTATGATTGAATCTGTAATTCTTAGATGCTGTCTTTCAATTTGCTGACTTTGACTATGAGAATTTGA GATGATTCCTCCATTGTAAGATGCTTTACTCAAAATGCTGTCCTAGGATATTAGGACTTTGATCCTTCTTGTTTTTGGAT TGATACGATAATCTTCGAAACTATTCCGAATGTGCTGTTTGACTTGAAACTCCGCCTATGTTGTGTCATAGTCTGTCATA AGCCGAAATAAAAGAGGAAGGTTGTGTTAGGTCTGCGGCAGTCAATGTAAAATTGGTCGTATCTTCAATATGAATCATGC GATTTATATAACCGACCTCACTTAGTGGGATAAGGATTTTGTTTATGTATGTTTATGTGCTGTTTGACTTACAATTGTCT TACAGACAAGAATAACTTTGGGATAGTATTTGTGACATCTTTTGTTTCTTTGTGATCAATTGGCAACAGGACTATGTGCC GACTGTTTTTGACAATTTCAGTGCAAATGTGGTTGTCGATGGGAGCACTGTGAATCTGGGGTTGTGGGATACTGCTGGTA AGTTTAGTTTCCTGGTTATATCTCATTCTTCTTGCATGCGAGGAGTGTCTTGTCTTGTCATTGTTTTGATGTTTTCAACT CTTGAAACAGGCCAAGAAGATTACAATAGATTAAGACCCTTGAGCTATCGCGGAGCAGATGTATTCCTGCTTTGTTTTTC TCTCATAAGCAGGGCTAGCTACGAGAATGTTGCCAAGAAAGTAAGCTCGGCTCAGTATTATGCTTTTTATTTTCAGCTTG TCTCACTTTACTCTAAACTTCTCCTCTCTTTTTTCCAGTGGATTCCTGAGCTGAGGCATTATGCTCCTGGTGTTCCAATT ATTCTTATTGGAACTAAACTTGGTTAGATTTTTTTCCTTCATTACCTTCTCGAACTATGTTTACACTGTTGATTTGGTTG GTTTGCTCCTTATGTGGTAGATAACATTCAGCATAAAGTGGTTTCATGATATTGTGAAGTTTCTTTGTTTGGTGATGATG TCAATTGCCATCTCTTACTCGCACTACGTTGCCGTTTTTTACTCACACTATATATCTCATTGGTTTAAAGTTGGGAAGTT ATTTATTATACCAATCTTCTAATTAGATGGTCTTCACGTAAGTTCTAGATTCTGATGCCACTGGTGTTAAATCTTGCCAT TGATGGCTTGTTATTCAGTATAGATTGAGAGAATCAAGTTCTTTCTTATCTTCCAATATACCTCAATCAGGACGTTTACC AATAATTGGTTCAGATATACCAATGAATTTGAAAGACAATTGCAGTAGCTATTTTTAGTGCTGCACGTGTGGTTATTGAT ATTTGATAAAACTTGAGAAGTCTGGCTTATGAAGTTTAAGATGACTGAACAGTGCTAGTACTTAGTACATGAGTAATGGA TTTGGCTCCTCTAAAGTGTAAGCAGAGATATTCTTTATATGACTTGTAATCTTCTTCACTGTTCATTGCTATCAATGGTT AGGGGATGTGCGCACCTCTAAAGTGCAGCTTACGTTTTAGAGGAGCTAAAATCCATGAGTTATTTGCTCTGATGGAGGCA GTGCTTGACATAATAACTCCTTGGCTTTATGACTCACCAAAATTTCTATTTCTAGTAGTCTATAACGAAAATAGAGCTTC TGTGATGAAAGTTATCTGTTGATAGTTTTTACATAGCTGCTTTTTGAATGTGTTTCCTCATACACATCATACTCATAGGT TTTAAATGCATGCATTTGACAGTTCCATTATCAAGCTCTCATGATATTTTTACTAGAGCATTTCATGACAACAAAATGTT TCTCTTGTAGATCTTCGGGATGATAAGCAGTTCTTTCAAGACCATCCTGCTGCGGTGCCAATCACCACTGCACAGGTATT TTTCTAGTTCTTCCTTGATACCTTTAATTCGTTTTTTTCTTTTCTTTTCTACTTCATTGTTTTTTGCCTTTTAGCCTTCA TTTGTTCATGATTTGAGCATCAGCTTCTTGAAAGGTTATTGGTCTGATTTACTGTCTTTTGTGAAGGGTGAGGAACTGAG GAAACTTATCGGTGCTCCTGTTTACATTGAATGTAGTTCTAAGACTCAGAAGGTACATATATTTCTTCAAATCCTTAAAA CTTTTGAAAGATTAAAGAATTTCTTGAGTCCTCATCTATATATTCTCCTTTGAATGCAGAATGTCAAGGCTGTTTTCGAT GCGGCCATCAAAGTAGTTCTCCAGCCCCCAAAGCAGAAGAAAACTAAGAGAAAGGGACAAAAGGCCTGTTCCATTTTGTG A
CDS sequence (LotjaGi3g1v0520900.9) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTGCTTCCAGGTTCATCAAGTGTGTCACTGTTGGTGATGGTGCGGTCGGCAAAACTTGTATGCTTATCTCCTACAC CAGCAACACTTTCCCTACGGACTATGTGCCGACTGTTTTTGACAATTTCAGTGCAAATGTGGTTGTCGATGGGAGCACTG TGAATCTGGGGTTGTGGGATACTGCTGGCCAAGAAGATTACAATAGATTAAGACCCTTGAGCTATCGCGGAGCAGATGTA TTCCTGCTTTGTTTTTCTCTCATAAGCAGGGCTAGCTACGAGAATGTTGCCAAGAAATGGATTCCTGAGCTGAGGCATTA TGCTCCTGGTGTTCCAATTATTCTTATTGGAACTAAACTTGATCTTCGGGATGATAAGCAGTTCTTTCAAGACCATCCTG CTGCGGTGCCAATCACCACTGCACAGGGTGAGGAACTGAGGAAACTTATCGGTGCTCCTGTTTACATTGAATGTAGTTCT AAGACTCAGAAGAATGTCAAGGCTGTTTTCGATGCGGCCATCAAAGTAGTTCTCCAGCCCCCAAAGCAGAAGAAAACTAA GAGAAAGGGACAAAAGGCCTGTTCCATTTTGTGA
Protein sequence (LotjaGi3g1v0520900.9) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADV FLLCFSLISRASYENVAKKWIPELRHYAPGVPIILIGTKLDLRDDKQFFQDHPAAVPITTAQGEELRKLIGAPVYIECSS KTQKNVKAVFDAAIKVVLQPPKQKKTKRKGQKACSIL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 197 | 197 | 6.0E-130 | – | |
| PANTHER | 1 | 197 | 197 | 6.0E-130 | – | |
| ProSiteProfiles | 1 | 177 | 177 | 25.477 | ||
| Gene3D | 3 | 183 | 181 | 1.3E-66 | – | |
| SMART | 4 | 180 | 177 | 7.7E-22 | – | |
| CDD | 6 | 178 | 173 | 5.71437E-137 | – | |
| SUPERFAMILY | 6 | 178 | 173 | 5.4E-54 | ||
| PRINTS | 7 | 28 | 22 | 2.4E-37 | – | |
| SMART | 7 | 180 | 174 | 1.9E-28 | – | |
| TIGRFAM | 7 | 171 | 165 | 5.3E-36 | ||
| Pfam | 8 | 178 | 171 | 7.3E-52 | ||
| SMART | 9 | 180 | 172 | 5.2E-116 | – | |
| PRINTS | 30 | 46 | 17 | 2.4E-37 | – | |
| PRINTS | 47 | 69 | 23 | 2.4E-37 | – | |
| PRINTS | 109 | 122 | 14 | 2.4E-37 | – | |
| PRINTS | 155 | 177 | 23 | 2.4E-37 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | GTPase activity | Catalysis of the reaction: GTP + H2O = GDP + phosphate. | ||
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. | ||
| Biological process | Small GTPase mediated signal transduction | Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals. |
Expression pattern of LotjaGi3g1v0520900.9, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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