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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0521200 |
| Transcript ID | LotjaGi3g1v0521200.5 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Synaptotagmin, putative; TAIR: AT1G20080.1 Calcium-dependent lipid-binding (CaLB domain) family protein; Swiss-Prot: sp|B6ETT4|SYT2_ARATH Synaptotagmin-2; TrEMBL-Plants: tr|I1LPS0|I1LPS0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0521200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:93775905..93779926) extracted from Lotus japonicus Gifu genome v1.2.
ATGAAAATTTATATGACTGATGAGAAGGAGCTAATTATGGAGCCTTCTGTAAAATGGGCGGGAAATCCTAATATCACTGT TGCTGTTAAGGCATTTGGGTTGAAAGCAACCGTTCAGGTAACCTATTTTTTTTTGCATGCACATGTTACTAGAGAGAGGA TATATAATTTCTGTTTTCTTTTCCTTTTCATGCTAAGAACTCTGTATATTTTCAGATCATGGATTTGCAAGTTTTCCTTT TGCCCCGCATTACTTTGAAGCCTTTGGTTCCTAGCTTTCCTTGCTTTGCCAACATCAATGTCTCTCTCATGGAAAAGGTT TGTGATTGTCGGGCGTATTACTCCTTCCCCCTAGCTTGGCATCCCACTTAATATGCAATATTGTAAATTGTATAATTTAT GAAATAATATTTTTTCTTCCCTTATGTTCTTCCTATACATATTGAGTAATTATTAGGACAGGTTTTATTCTGATTATCAT TAATTATGATTCATGTATATTATCTATAAATATTAGACCTCGTAATTTTCATATGATAGGTGAATAAAATTCTGATCACT CAGCTGTTAAGATGATATCATATTCATAACATATCTTTGATATGACATTAGACCCAAAATTGTGCCTTCAATGCGGACCC ATAGCTAGCAGCCTTCGTTGGAATTAAAGTTGATAGAAGACTGGATGATAGGAAATTCAATCCTTAATGGGAAGTAGAAT AAGCCTTTCATTCTGACCTAAAAAACACATCGCACTTATATTTCAAATGGTACTTCGACCATAAGGTCTTGAAACTTGGA GTGTTTAGGATTAAAAAAAACTCATGAGATTCATTGGTGTTTAGACACTTAAAAGCCGAAAGGTGGCTTCCAAAATATTT CGAGAGGCTGTTGAAGATCAATCTCTGAGTTGTTGTCAACAAGAAAATCATCTTATGATTTCCTCCCTTGTTAATAGTTT AACAACTTCAAATATAATTGCGATTGTGCATTTTTTTTTGGGCAGACTGCTTTCATATATAATTGATTTGTGATTTGTGA TTGTTGGCATATTTTAGTCGATCTCCTGATGATGATATATGAAGTGAATAATGCCATTGTAAGATAACTCTGATGATGCT GAACTTCGAGCCTTTTTTACCCCTTAATCGTAATTAATTTGTTACTTTCTCTTTTATTTTGAATGTATGAGGAAACGTTG GTACTGTATGGCCAATATTGATTTCCACTTGTAATCATATTAGGTATAATACTTATATTCTCTCTCTATCTCTTTGTTTT TGGTGTTTATTATTGTGCAGCCACATGTTGACTTTGGACTAAAGCTTGTAGGGGCTGATCTTATGTCTATTCCTGGCGCC TACAGGATTGTTCAGGTAAAAAACCTATCTTTTTTATTGTTTTGTTTGCCTTCCTATCCTAATTTTTTGAGGCATAAAAT TGCTGACTTTCATCTTCCACTCATTTTAAAGGGGGAGTGGTCACTTTCCTGCATAATAAATAATTTCCCGCTGTAGAAAT TGTCCACTGTTTTCGCAGGAGGATCTTATTTTGAAATATATAATATCTTAGTGAAGACGTTGATTTTTGTATGCACTGTT TTATGTATATCTTGTATCAAGCTGGTTTCTGTATGTGCATGAAAGATAGAAATTCGATTGCCCAAGAAATAAGAACTGTT GTGTTTGTAATGATATGAACATGAAGAAATAAGAAATGTAATGTAGAAGTCTGAGGTTGAATGTTTTGTTGGCTTGTTAA GTGTTTCTTTCCAGGTCATTGAGAGTAAAGTTGTTGTGTCTTATAGAAGATGGCCAGTAGTGTCAGCTAGTTGTTACCCT TTTTGCCAGAAGCCATCTTTAGTTTGATCTGGACATTTTCTTCTCTTGTAAAGTTGAAATCTCATATTCAGGCTCTTGCT GTTTATACAAACAAAATTTGATTGGGTGTGTCTATTGAATTGAAACTTGAAAGATTTTGATGGCTATTTTCAATGCCTTC CATTCTTTCGTCTGTACCATCTTTTTATGAAATTCTATCATTTGGAAAACTGGTGATTACATTATGTTGCCCGTATATGG CATTCTCAGTCTGGAAGGTGTATTTCTGGTTTATGGTATTATAGTAGCAAAACATTACCTTTTGTAACATATCTATATTT ATGTTATTGTCATTAACTAGTGAATGTTTTGTTGAAGGTTTTATGGCTATGATACTAATTTATAGAGTGTTGTTTTCAGG ACCTCATCAAAGATCAGGTTGCAAACATGTATCTATGGCCCAAAACCCTGGAAGTTCAAGTATTGGATCCAGTAAAGTAT GTTTCTTCTTTACTCTAAAGTATATTTTCATAATATAATGGTATATTACCTTTTAACTCATTTCTGTTTTTTCTTGTGAA TGTTATTGGGAATCTTAGAGCTATGAGGAGGCCTGTTGGAATTTTACATGTAAAGGTTGTGCAAGCGATGAAGTTAAAGA AGAAAGATCTTCTTGGTGCATCTGACCCTTATGTGAAGCTGAAGCTTACTGAGGATAAGTTGCCATCGAAAAAGACTACT GTAAAGCACAAGAACTTAAATCCAGAATGGAATGAAGAATTTAATATGGTAGTCAAAGATCCAGAGTCCCAGGTTTTACA GATTAATGTTTATGACTGGGAGCAGGTAAACTTCTTGAGCTGAAAGCTTTATCCTATAGTTTTTTCTTTTCGATATATGA ACTGAACATTGTTTTTTTATCTTTTCTTAGGTTGGGAAGCATGACAAGATGGGTATGAATGTGATCCCTTTAAAAGAAGT TTCCCCTGAAGAGCCTAAACGTGTTACTCTTGACCTCCGAAAAACTTTGGATCCCAATGATGTTCAAAATGAGAAGTCAC GAGGGCAGATTGTTGTGGAATTGACTTATAAACCTTTCAAGGAGGAGGAGCTGGGCAGGGGATTTGATGAGACACAGACA GTGCCGAAAGCACCAGAAGGTACTCCAGCTGGTGGAGGTCAGCTTGTAATAATAGTCCATGAAGCACAAGATGTTGAAGG GAAGTACCACACTAATCCACATGTCCGTCTTATTTACAGAGGAGATGAGAAAAAGTCTAAGGTACATGATCCCCAGAAAT ACTTACGTTCTACTTTTTATTCTTTCTAGAATATATGGAATGAATAAAATTGCAGGTTTCTTAATCTTTCCCCCCTGAAA AACTAGGGGAAAACCTCTTGACTCCACTAATGTCATTTGATCCATGTGGTTGAATTTGGTTTTTGTTGCTGTATTAATCT TCCAAAAAAACACATTGGGATGTAGATGTAGATGCAGATGTTGGGAGACAATTATGGATTGGGGTGTTAGTCGTGTAAGT ATACATTGACTTGTTTTTTTACAGAATGGTAATGATTCTTTGGTTACTATTACAGCGCATAAAAAAGAACAGGGATCCAA GATGGGAAGAGGAGTTCAAATTTATGGCGGAGGAGCCTCCCACCAATGACAGATTACATGTGGAGGTTGTCAGCACTTCA TCACGAAACCTGCTCCATCAGAAGGTACATAATTCATGACAACTTTACCATTCTTATTATTAATATGATTATACTTCATA GAAACAAAAACCTAAAACCTTTTCAGAGTTTGTTTCATGTCATCTACAACAGTAAAAGTTAGATCAGGAATCCTCAAATT ATTGAAAAGAGTTAAAGTTACTTATGGAATGTGCACAAATATTTTATGATTCAAAATCCAAATGTAAAATAGTAGGCTCT ATCATACACCAGCCCTTTAACTCTGGTTAATATCATGAGCAATTGACACTTATTCTTCAAATTAAAGCAATTTGCCCACA ACATGCTATGATTGAGTTTTATTGTTTTTTGCTGTTCCTTTCGGCATTAGGAATCATTGGGTTATGTCGACATCAATCTT GGGGATGTTGTTTCTAACAAAAGGATCAATGAGAAGTACCATCTTATAGACTCCAAGAATGGTCGCATTCAGATAGAGTT GCAGTGGAGAACTTCTTCATAG
CDS sequence (LotjaGi3g1v0521200.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAAATTTATATGACTGATGAGAAGGAGCTAATTATGGAGCCTTCTGTAAAATGGGCGGGAAATCCTAATATCACTGT TGCTGTTAAGGCATTTGGGTTGAAAGCAACCGTTCAGATCATGGATTTGCAAGTTTTCCTTTTGCCCCGCATTACTTTGA AGCCTTTGGTTCCTAGCTTTCCTTGCTTTGCCAACATCAATGTCTCTCTCATGGAAAAGCCACATGTTGACTTTGGACTA AAGCTTGTAGGGGCTGATCTTATGTCTATTCCTGGCGCCTACAGGATTGTTCAGGACCTCATCAAAGATCAGGTTGCAAA CATGTATCTATGGCCCAAAACCCTGGAAGTTCAAGTATTGGATCCAGTAAAAGCTATGAGGAGGCCTGTTGGAATTTTAC ATGTAAAGGTTGTGCAAGCGATGAAGTTAAAGAAGAAAGATCTTCTTGGTGCATCTGACCCTTATGTGAAGCTGAAGCTT ACTGAGGATAAGTTGCCATCGAAAAAGACTACTGTAAAGCACAAGAACTTAAATCCAGAATGGAATGAAGAATTTAATAT GGTAGTCAAAGATCCAGAGTCCCAGGTTTTACAGATTAATGTTTATGACTGGGAGCAGGTTGGGAAGCATGACAAGATGG GTATGAATGTGATCCCTTTAAAAGAAGTTTCCCCTGAAGAGCCTAAACGTGTTACTCTTGACCTCCGAAAAACTTTGGAT CCCAATGATGTTCAAAATGAGAAGTCACGAGGGCAGATTGTTGTGGAATTGACTTATAAACCTTTCAAGGAGGAGGAGCT GGGCAGGGGATTTGATGAGACACAGACAGTGCCGAAAGCACCAGAAGGTACTCCAGCTGGTGGAGGTCAGCTTGTAATAA TAGTCCATGAAGCACAAGATGTTGAAGGGAAGTACCACACTAATCCACATGTCCGTCTTATTTACAGAGGAGATGAGAAA AAGTCTAAGCGCATAAAAAAGAACAGGGATCCAAGATGGGAAGAGGAGTTCAAATTTATGGCGGAGGAGCCTCCCACCAA TGACAGATTACATGTGGAGGTTGTCAGCACTTCATCACGAAACCTGCTCCATCAGAAGGAATCATTGGGTTATGTCGACA TCAATCTTGGGGATGTTGTTTCTAACAAAAGGATCAATGAGAAGTACCATCTTATAGACTCCAAGAATGGTCGCATTCAG ATAGAGTTGCAGTGGAGAACTTCTTCATAG
Protein sequence (LotjaGi3g1v0521200.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKIYMTDEKELIMEPSVKWAGNPNITVAVKAFGLKATVQIMDLQVFLLPRITLKPLVPSFPCFANINVSLMEKPHVDFGL KLVGADLMSIPGAYRIVQDLIKDQVANMYLWPKTLEVQVLDPVKAMRRPVGILHVKVVQAMKLKKKDLLGASDPYVKLKL TEDKLPSKKTTVKHKNLNPEWNEEFNMVVKDPESQVLQINVYDWEQVGKHDKMGMNVIPLKEVSPEEPKRVTLDLRKTLD PNDVQNEKSRGQIVVELTYKPFKEEELGRGFDETQTVPKAPEGTPAGGGQLVIIVHEAQDVEGKYHTNPHVRLIYRGDEK KSKRIKKNRDPRWEEEFKFMAEEPPTNDRLHVEVVSTSSRNLLHQKESLGYVDINLGDVVSNKRINEKYHLIDSKNGRIQ IELQWRTSS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 408 | 408 | 6.8E-249 | – | |
| ProSiteProfiles | 1 | 120 | 120 | 14.471 | ||
| PANTHER | 1 | 408 | 408 | 6.8E-249 | – | |
| Pfam | 6 | 118 | 113 | 2.9E-7 | ||
| Gene3D | 127 | 277 | 151 | 3.3E-35 | ||
| SUPERFAMILY | 128 | 264 | 137 | 2.98E-32 | – | |
| Pfam | 131 | 232 | 102 | 3.5E-24 | ||
| SMART | 132 | 232 | 101 | 1.5E-21 | ||
| ProSiteProfiles | 133 | 217 | 85 | 16.924 | ||
| CDD | 133 | 235 | 103 | 1.66944E-26 | – | |
| PRINTS | 148 | 160 | 13 | 1.2E-7 | ||
| PRINTS | 175 | 188 | 14 | 1.2E-7 | ||
| PRINTS | 197 | 205 | 9 | 1.2E-7 | ||
| SUPERFAMILY | 288 | 406 | 119 | 2.08E-18 | – | |
| Gene3D | 289 | 408 | 120 | 1.9E-22 | ||
| Pfam | 289 | 391 | 103 | 7.1E-13 | ||
| ProSiteProfiles | 290 | 373 | 84 | 9.45 | ||
| SMART | 290 | 388 | 99 | 9.0E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Lipid binding | Interacting selectively and non-covalently with a lipid. |
Expression pattern of LotjaGi3g1v0521200.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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