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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0529000 |
| Transcript ID | LotjaGi3g1v0529000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ATP-dependent Clp protease proteolytic subunit; TAIR: AT5G23140.1 nuclear-encoded CLP protease P7; Swiss-Prot: sp|Q9FN42|CLPP2_ARATH ATP-dependent Clp protease proteolytic subunit 2, mitochondrial; TrEMBL-Plants: tr|I3SVH6|I3SVH6_LOTJA ATP-dependent Clp protease proteolytic subunit; Found in the gene: LotjaGi3g1v0529000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:94572234..94574779) extracted from Lotus japonicus Gifu genome v1.2.
ATTAAGCTGAGTCAACAACCCAAGCCCTAATCCAATAAAAAAGGTGAAAAATCCCCAATCTGAGTATCACTGTGAGACAG CCATAGCCATGAGAGGCATTCTCCGAAGCACGAAGCTAATCGGGAACCAGTTCCTCCATGGAAGGAGAACTGAATTCACA CAATGGACTGCAAATCGATCCTACGGCCTGATCCCAATGGTGATTGAGCACTCTTCCCGAGGCGAACGAGCCTACGACAT CTTCTCTCGCCTTCTCAAGGAGCGCATCATCTGCATCAACGGACCCATCTCCGACGACACCGCTCATGTCGTCGTCGCTC AGCTCCTCTTCCTCGAATCCGAAAACCCTTCCAAACCTATCAACATGTATCTCAATTCTCCTGGTGGCGCCGTCACTGCA GGTCCCATCTGAATCCCGTTGATTTTAGGTTTATCTGATTCTGTATTCTCTATCAAAATCTCATTTTTCGACGCCCCATT TTGTGACATCTCAGCAAAACGTTCATTACCAATGCTCTGATTTGTAAATGCTACCCCTTTTATTATCTGATAACTTTTGA ATTAGTTAATTATCATCTGGCAGTTAGTTTGTTGATAAGTTAGTTATTGTTAATCTTGCTAATTCTGTTAGTTAGCCTAT TGTTACATTGAACAAGAGAATATATATGCTCATTTTCCATAATTTATTATCTCAACATGGTATCAGAGCCTATCGTAGAT TCATTTATGGGGCCACCTTTAAATGAGCCAACCGCCGATGTCTAGTTCTGCAAACTACAACTATGAGCGGGAGGGGATGT GTTCAGGTCCCAACTCTTACATTGACTAGAGATATAATCGAAATAGGTTTATAAAACATGGTTTTTAATATGGACAAAGC TTAGATGCAGTTCCATATATGCATGTCCGTTGTCTAATTACAACATGGCGCGTGGGTTGGAAATGAGAAGTTAAGGAAAG TTATCACATTAGTTAGATAGATATTAAGATAGTGGGTAACATCACACCCTGTATGCAAGTTTTGTCCTTTTAATATTTGT AGGTGTTTATCTTTGGATACTTTAATCATTAGGGTTTGATTTATGACAGAATATTATGCACAGGAAAACAAAATTGGGTT GTTGGTGTTGTGATATGGTGTTTTGTGCTGAGACTTGCACTGGTGTGATTTTTGTTATGTGCAGGGCTTGCAATTTATGA TACTATGCAGTACATTCGGTCTCCAATCAATACGATCTGTTTAGGCCAAGCTGCGTCCATGGGTTCTCTCCTATTGGCTG CGGGTGCCAAGGGTCAGAGGCGTTCCCTTCCCAATGCTTCTATCATGATTCACCAGCCCTCTGGGGGTTATAGTGGCCAG GCAAAGGATATCGCCATTCATACTAAGCAGATTGTTCGGGTTTGGGATTTGCTGAATGATTTGTACGCCAAGCACACGGG CCAGTCGATTGAGCTGATTCAGAAGAATATGGACAGGGATTATTTCATGACTCCAGAAGAGGCGAAGGAGTTTGGGCTTA TTGATGAGGTTATTGATCAGAGACCAATGACTTTGGTATCTGATGCCGTTGGTAATGAAGGCAAAGATAAAGGTTCGAAT TAGAACTGGAGGGTAAGATTTCTTTGAGGAATTCTTGCTGTATTTAAATACCATGCTTGTCACTTTAGGTATAAGTTGCA GTTGATATTACTTTATCAATTGGACATAATCTTTGTCAATTTTGGTTGTTAGATTTGATCATTGAACTTCAGTCTTGTGC TCAATTCGGTTTCATTGGCATATTTTTTTGTCACACTGATTTTGAACTTTTAAGTGGCATTCTCTAGACGTTGCTAATTA TCCACAATAATCTGAGGTAATTGTTTCAGTGAGGGTATGTGATAGTATAATTGATTGCTAATTTATGTGACTGAAGAGTG AAGCTTTGATTTCTTTGGAGTTTCAAGTTTCAACACATGCTACTCTGTTATGTATTGATATATTTCTGCTGTGTCACTAT TTCTTCAAATAAAAATTTAGCATACTGATAGATCCTATGACTAGGAGGAATTAAGAAGAAGGGAATCATCGCAAGAGATT AAGAAGAAAGATTTGATAATCAAATGTATTCAACTCAATCGTCAAAGCTCATAAATGGATTCTGTTTTGTAGATGCTTTA AAAGCAAATCCTTAAATTTTATGGTCATGGTAACGTTAAACATGATATCCATTCATGATAACTTGACAAGGTTTACACGT TTTTATTGTGATTCCTAAAACCTAATACTTTTGAGTTACATGTGAATCAGGGTTTCTAAAGTTACACGTTACCTTTTATA TTGGACTGGCATTTGTGTAGGCTAGGGTAAGTAAATAGGAACTTAAGTAAGGGTCAAGTTGCTCTTCACTCACTTACTCT CTCTCTCTGTCTGATGAAATTGTTAAACCTTTGCGAGTGGACAATGTAATTCTTTTTTTGGGTGATAGATTTGAAGCTAG TTTCAAACTAATAAGAAGGACATGAAGCAAATGAAGTAGTAGAAATGTTTTGATGTTGAAGAATGA
CDS sequence (LotjaGi3g1v0529000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGAGGCATTCTCCGAAGCACGAAGCTAATCGGGAACCAGTTCCTCCATGGAAGGAGAACTGAATTCACACAATGGAC TGCAAATCGATCCTACGGCCTGATCCCAATGGTGATTGAGCACTCTTCCCGAGGCGAACGAGCCTACGACATCTTCTCTC GCCTTCTCAAGGAGCGCATCATCTGCATCAACGGACCCATCTCCGACGACACCGCTCATGTCGTCGTCGCTCAGCTCCTC TTCCTCGAATCCGAAAACCCTTCCAAACCTATCAACATGTATCTCAATTCTCCTGGTGGCGCCGTCACTGCAGGGCTTGC AATTTATGATACTATGCAGTACATTCGGTCTCCAATCAATACGATCTGTTTAGGCCAAGCTGCGTCCATGGGTTCTCTCC TATTGGCTGCGGGTGCCAAGGGTCAGAGGCGTTCCCTTCCCAATGCTTCTATCATGATTCACCAGCCCTCTGGGGGTTAT AGTGGCCAGGCAAAGGATATCGCCATTCATACTAAGCAGATTGTTCGGGTTTGGGATTTGCTGAATGATTTGTACGCCAA GCACACGGGCCAGTCGATTGAGCTGATTCAGAAGAATATGGACAGGGATTATTTCATGACTCCAGAAGAGGCGAAGGAGT TTGGGCTTATTGATGAGGTTATTGATCAGAGACCAATGACTTTGGTATCTGATGCCGTTGGTAATGAAGGCAAAGATAAA GGTTCGAATTAG
Protein sequence (LotjaGi3g1v0529000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRGILRSTKLIGNQFLHGRRTEFTQWTANRSYGLIPMVIEHSSRGERAYDIFSRLLKERIICINGPISDDTAHVVVAQLL FLESENPSKPINMYLNSPGGAVTAGLAIYDTMQYIRSPINTICLGQAASMGSLLLAAGAKGQRRSLPNASIMIHQPSGGY SGQAKDIAIHTKQIVRVWDLLNDLYAKHTGQSIELIQKNMDRDYFMTPEEAKEFGLIDEVIDQRPMTLVSDAVGNEGKDK GSN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 16 | 237 | 222 | 3.7E-137 | – | |
| PANTHER | 16 | 237 | 222 | 3.7E-137 | ||
| Gene3D | 23 | 228 | 206 | 2.9E-84 | – | |
| Hamap | 34 | 224 | 191 | 41.026 | ||
| SUPERFAMILY | 42 | 225 | 184 | 3.73E-72 | ||
| Pfam | 43 | 223 | 181 | 4.8E-82 | ||
| PRINTS | 50 | 65 | 16 | 1.9E-47 | ||
| CDD | 50 | 220 | 171 | 1.03252E-108 | ||
| PRINTS | 90 | 110 | 21 | 1.9E-47 | ||
| ProSitePatterns | 121 | 132 | 12 | - | ||
| PRINTS | 121 | 138 | 18 | 1.9E-47 | ||
| PRINTS | 142 | 161 | 20 | 1.9E-47 | ||
| ProSitePatterns | 143 | 156 | 14 | - | ||
| PRINTS | 199 | 218 | 20 | 1.9E-47 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Serine-type endopeptidase activity | Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine). | ||
| Biological process | Proteolysis | The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. |
Expression pattern of LotjaGi3g1v0529000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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