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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0550000 |
| Transcript ID | LotjaGi3g1v0550000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Peptidylprolyl isomerase; TAIR: AT3G21640.1 FKBP-type peptidyl-prolyl cis-trans isomerase family protein; Swiss-Prot: sp|Q9LDC0|FKB42_ARATH Peptidyl-prolyl cis-trans isomerase FKBP42; TrEMBL-Plants: tr|A0A0B2RKD3|A0A0B2RKD3_GLYSO Peptidylprolyl isomerase; Found in the gene: LotjaGi3g1v0550000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:96701168..96706171) extracted from Lotus japonicus Gifu genome v1.2.
CTTTATTACACAAAATCTAAATTCATAAATTTCACATAATATTGTATTGGAAATTCATGCCAATATTTCTCTTCAAACAT ATGTGAGATCATCTACATAGAAAATTTCACATACATGAGATGAGAGGATTATCCTAAAGAGTACATAGTTAATTAAAAAT AAGACTAGATTAGAATTATCCATTACAACTTTGATTATACTCTAAATTCTCTCTACCCAGCCCTCTGTCTCTCTAGAATC TTCTTGAATCGAGTGGGCACACGAAACAAACAAAATACGATCTGGTCAACGCGAGCGAACGAGCTCCAGTGTTCTCCCCT CCCCTCCCCTCATGTTTGTTTCTCGAGAAAATTTCTAAGACCCTCATCACTGTTTTCTTTTCTCACCATGGAGGAAGTTC AAGACGACTCTCAAACCCAATCATCAACCGGTAATTTGCATATGCATTGCTAAGAAAAAGTTCAATTTTCTGTTTAATTT CTTCCAAACTGTTGTTGGGTTTTGAATTTTGGCACTGTTGTGTTTGTTAATGGTTGGTTGCAGGTCAAGAAAATGGGGAT GATGAAGTGATCACTGAAACTTCTGCTTTTGTTAAAGGGGAACCCTCACAACAACTAGAATTGAGTAGCCCCCCAAAAGT TGATTCTGAACTTGTGGTTCTTCATGACAAGGTCACCAAACAACTCATTAAGGAAGGCCATGGTCAGAAGCCTTCTAAGT ATTCAACTTGCTTCAGTAAGTACCTCAGCTGATCATACTGTCACTTTGAGTTTCATCCATTTAGCTGGGAAAAGATTTGG TTGTTGTTGTTGAATGGAATTCATTATGTCTAGCTAGGTATTGCAACTCAAGCTATATTTTAACTGTTTAAACAATTTAA GGCAATGCTTTGGTTTTGGTATGAAAATGTAAAGTGTTAGAACATAGAACATCTTTTGTTGTTATACAATAAGAAAACCT TCTTTTTTATAGAATCAAAGCAAAATTGTATTAGACACTAGTTCCTCTTATCTATGCCTGTGCTCTTCTTATGAGCCCTT TCTTGCATAGCCCTTGTTTTGTTTCCTTGTCAGGTCAAAATCATGATTGTGACCTAGATGTTTTTTTGGTGGTAGTTCAT TACAGGGCGTGGTCTGAGAGCGCGCAGCACAAGTTTGAAGACACATGGCTGGAGCAACGACCGACTGAGATGATATTAGG AAAAGGTAGGTTCCTGATGGAAGTTTGAAGTATTGGATTTCTTTCATCCATTTGTCAATAGGACTTGTGGATTTTCATTG TCTAAAGTTCCTATATTTATTCTCCAAATCTTTGATCCTATTTGTACACTGCTAATGGAACACAATTCCAACTATATTTT GCTCATCTTCTGTAATGTTAGTTTCAGACATTTGCCAATGAGTTTTGATAAATGAGAGGACACTTTGTATATGTTTGTTC AATATTTTGTCTTCAATTCTTTTTTATTACTAATTCTTTGTATACATTTACCAAGAATAGTGTGGCCAACATCTGCTATG TCACTATGCCAGAGTTGAATGCAATCCCCCCCACCAACACACGTACACAACCACCACAAAAAAGAATTAAAATATGTTTT TTCCGCGTGCATTGCTCTACCAGTCTTGTTATTGATTTTGATGGATTTCTCTGAAACAGAGAAGAAAGAAATGACTGGCT TGGGCATTGGTGTGGCAAGCATGAAAGCTGGGGAGCGGGCGTTGCTGCGTGTGGGCTGGGAATTAGGATATGGAAAAGAA GGAAGCTTTTCTTTTCCAAATGTTCCACCCATGGCAGATATAGTTTATGAAGTTGAGCTCATTGGCTTTGATGAAACAAA AGAAGTAAGTTGGCAATAGACTTATTATATGACCATGGACTTGGCAAGATGCTTATTGTTCCTAATTTCACAGGGAAAAG CTCGCAGTGATATGACTGTAGAGGAAAGGATTGGTGCAGCAGATCGGAGAAAGATGGATGGAAATGCTCTGTTTCAGGAA AATAAACTAGAGGAGGCTATGCAACAGTATGAAATGGTTACACACTTATGTTTCTTTTGCTCTTTTAATTGCTCTTAATC CATGAAAATTTCTTTCTTCTCTCTATTTGTATTTCATTATTTTGGTTTTGATAAATTCTTGATTGCTGTGCTTCTTGTCA GGCCATTGCTTATATGGGAGATGATTTCATGTTCCAGTTGTTTGGGAAGTATAGAGATATGGCTCTGGCTGTAAAGAATC CATGCCACCTTAACATGGCCGCCTGTTTTATTAAGCTGAATCGCTATGAAGAAGCTATAGGACACTGCAGCATTGTAAGT GACTTTGACGGTCAATTCAGATTTCAGCCTATTAAAATGCTCTTTTATATGCTGTATTCTTTTTAAGTCATACTATATAT TGGGGTTCTGGTCAATGTTCCTTTCACCTTGTCTTTTTTTGTGACTTGTGAATGGAATATAATTATGAATTAACAATTAT ATCCTAATAATATGCTGCTTTTTTTTTTTCTCAAGGGTCCCTTTAAATCTTAATGAATGAAAATTTCAAACTATTTTTTT GTTAATTTGCATCATGAGTCAGTCAAATTAGACATAAGATGTGGGTTTTACCACACTAAGCATATCTTGTCATATTTTTT CAGTCAAGGAAAATATACACTTGCTGTCAATTAAGAGTTGATTTCGTTGCCAGTTTAGCATGTAATTGTGGGTACTGCAT CAAGTTTATTTGTTATGCAATTGGGATGTTTTACCTCATTCAGAACATGAATTAAGAGCCATGTCTGAAGTCTGTATGCA TTCAAACTATGGATGATGAAACTCATGTGGATTTGTGATGGTAGGAAAAACCATGAATTTCTGACTGAAAAAAATAATCA CCTTTTAGTACATACATAAGAGTCATTGATTATCCAATTTGGTTTAATTGCATGATGGAACTTGCAGGTTCTAGGTGAGG ACGAGAACAATGTGAAAGCATTATTTAGGCGAGGTAAGGCTAGAGCAGCACTTGGGCAAACAGATGCTGCCAGGGAAGAT TATCTAAAAGCGCGAAAGTATGCCCCTGAAGATAAAGCAATTGCAAGAGAATTAAGGTTGCTTGCTGAACATGACAAGGC TGTTTACCAAAAGCAGAAAGAGATCTATAAAGGAATATTTGGACCAAGGCCTCAACCAGTACCTAAGAGAAAGAATTGGC TCATACTTATTTGGCAGTGGTTTCTATCACTATTCTATGGCCTGATCACACTCTTCAAACGTGAAAGATACAAATCTGAT TAATTAAACTTTTGAAGGAGAAGACTATGTTGACAATTGTTTACATGCATCCTGTGAAAGGCCACTTCTTCTGCTACTGA GGAGTAATCGTACTATGTCTCTTGGATAATGGAACAATATGTTTGAAAAGCAATTTCACTCCTTTTTAGATGTTTGACAA TACTATCTACCTGATGCTAAACAGTTTGATAGTTTTGTCTAGAACCATTTTGTTGTTTAATTTAAAGTGTTCTAGTTATG CTGCAAAATGAGAATACTGTGTTATTACTTATTAGTTTGTGTAGAACGACATGGTTTAATTGAGGCTAATTAATGGGAAA TGGAAAATTCTGCTCTTCTTTCGCAGGTTGCTCAAATATAAACGTGATTATATTCTCATGCGTGTTATCTACATCAAGCT CAAACCTCCAAGTGCCTAGAAAACATCCATTTGAACCCTTCACACCCTTGCAAGCATGCTCTTTTACTTTAATGGGTGAC ATAGTTTATTTGTTCTGGGTTATCAGAACTCTTTACCAACTATTTTTTTTTTATAAATATTATATAGGTATTTTCCACCG GAAGCAATATTGTTAGAGTTGGTAACAATCACGTATTGGTGGGGCCAGTGCTTCTAGCAAGATTATTCTCAATTTCTCAT ACACAACATTCGAATATGAGACATTATTTAACGAAAATCATGTACCCTTAAACCAATCATCTGCTTGTTTTCCCAACTAT AACTGCAAGTCTGCAGCAGAGGAAATGGATATTGATACCATCATACATGTCATGAGCATTTTCCAAATGTAAATAAAACA CATCTTGCTTATTAGAAACTAAAACCATCATATATCAATTCTGCAAAGAAACAGCCTTTACTTACAAGTTATACAGCTTT TCTACAAATAAAAGGCCAGTGCAGATATGAGGTATCCAGCTAGCTAGTAAAACTACCATAGGTGTTTGGGCAAAGATGTC CAAGCACAATAAGCACATACTAGTTTCTGGGATATGTACACATAAAGTGCAAAGGATATACTCATGAGAAACAAGTCTTT CCAATCACCCTTTTGCTTTGGACTCAAATTCTGCTCTGGCCTCTTCCCAAGCTTCTCAAAACCATTCAACACTTTCCATT TCAACAAGTTAATCAACTTTCCTCCTCTCATGTCTTTCTTCTCATCAGGGTTGGAGTTAGAGGCAAGTCTTCTACCCTGG CAGGCCACTAGAATGAAGATCCTGGGGCTGGTTCTGTTTGTGAATTCATGATGAGATGATGTCCTTTTGCCACAACAACA GTGGCCAACAGTGAGAGCTGCCATGGAAGGATGAGAGAGGAAGAAGGAGTTTGGTATTGTAATAATTTGCGGTCAACAAG AAGTGATTGAATGGAAGAGATAAAGCTTCAGGGTTGGTGACAAAAGTTGGTGGAGCCTTCACGCTATAAAGCATAATAAT GATTGCTCACTTGGTTAGATATTTTTCTTCAAAGGGGTTAATGGATAAGGGGTCTCAGCACCTGATATTTTGTGGAGACC AAAAAATTTGCAATTCTTTGTTCATACATATACTGATCGATGTTGTTAGTTCAAATTGCTATTGAATTTTTCTCAATTAA GCAAGTTTTGGAATTGAATGCTGCTTGAACATTGTAAGACATTGAACCGTCTCACTTTTGTGAACACTGATCATAAGTGG CAAAAGTCGTCGGAATCTTGTATAGCTAACTTATTAAGACTAGG
CDS sequence (LotjaGi3g1v0550000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGAAGTTCAAGACGACTCTCAAACCCAATCATCAACCGGTCAAGAAAATGGGGATGATGAAGTGATCACTGAAAC TTCTGCTTTTGTTAAAGGGGAACCCTCACAACAACTAGAATTGAGTAGCCCCCCAAAAGTTGATTCTGAACTTGTGGTTC TTCATGACAAGGTCACCAAACAACTCATTAAGGAAGGCCATGGTCAGAAGCCTTCTAAGTATTCAACTTGCTTCATTCAT TACAGGGCGTGGTCTGAGAGCGCGCAGCACAAGTTTGAAGACACATGGCTGGAGCAACGACCGACTGAGATGATATTAGG AAAAGAGAAGAAAGAAATGACTGGCTTGGGCATTGGTGTGGCAAGCATGAAAGCTGGGGAGCGGGCGTTGCTGCGTGTGG GCTGGGAATTAGGATATGGAAAAGAAGGAAGCTTTTCTTTTCCAAATGTTCCACCCATGGCAGATATAGTTTATGAAGTT GAGCTCATTGGCTTTGATGAAACAAAAGAAGGAAAAGCTCGCAGTGATATGACTGTAGAGGAAAGGATTGGTGCAGCAGA TCGGAGAAAGATGGATGGAAATGCTCTGTTTCAGGAAAATAAACTAGAGGAGGCTATGCAACAGTATGAAATGGCCATTG CTTATATGGGAGATGATTTCATGTTCCAGTTGTTTGGGAAGTATAGAGATATGGCTCTGGCTGTAAAGAATCCATGCCAC CTTAACATGGCCGCCTGTTTTATTAAGCTGAATCGCTATGAAGAAGCTATAGGACACTGCAGCATTGTTCTAGGTGAGGA CGAGAACAATGTGAAAGCATTATTTAGGCGAGGTAAGGCTAGAGCAGCACTTGGGCAAACAGATGCTGCCAGGGAAGATT ATCTAAAAGCGCGAAAGTATGCCCCTGAAGATAAAGCAATTGCAAGAGAATTAAGGTTGCTTGCTGAACATGACAAGGCT GTTTACCAAAAGCAGAAAGAGATCTATAAAGGAATATTTGGACCAAGGCCTCAACCAGTACCTAAGAGAAAGAATTGGCT CATACTTATTTGGCAGTGGTTTCTATCACTATTCTATGGCCTGATCACACTCTTCAAACGTGAAAGATACAAATCTGATT AA
Protein sequence (LotjaGi3g1v0550000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEEVQDDSQTQSSTGQENGDDEVITETSAFVKGEPSQQLELSSPPKVDSELVVLHDKVTKQLIKEGHGQKPSKYSTCFIH YRAWSESAQHKFEDTWLEQRPTEMILGKEKKEMTGLGIGVASMKAGERALLRVGWELGYGKEGSFSFPNVPPMADIVYEV ELIGFDETKEGKARSDMTVEERIGAADRRKMDGNALFQENKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCH LNMAACFIKLNRYEEAIGHCSIVLGEDENNVKALFRRGKARAALGQTDAAREDYLKARKYAPEDKAIARELRLLAEHDKA VYQKQKEIYKGIFGPRPQPVPKRKNWLILIWQWFLSLFYGLITLFKRERYKSD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 345 | 345 | - | – | |
| MobiDBLite | 1 | 46 | 46 | - | – | |
| MobiDBLite | 7 | 23 | 17 | - | – | |
| PANTHER | 14 | 369 | 356 | 2.9E-219 | ||
| PANTHER | 14 | 369 | 356 | 2.9E-219 | – | |
| MobiDBLite | 30 | 44 | 15 | - | – | |
| Gene3D | 42 | 167 | 126 | 2.6E-29 | – | |
| SUPERFAMILY | 49 | 172 | 124 | 2.36E-20 | – | |
| Pfam | 70 | 163 | 94 | 2.6E-13 | ||
| ProSiteProfiles | 74 | 166 | 93 | 16.801 | ||
| Gene3D | 174 | 334 | 161 | 3.0E-42 | ||
| SUPERFAMILY | 178 | 328 | 151 | 5.58E-25 | ||
| SMART | 186 | 219 | 34 | 12.0 | ||
| ProSiteProfiles | 186 | 219 | 34 | 7.037 | ||
| ProSiteProfiles | 186 | 219 | 34 | 6.756 | ||
| SMART | 237 | 270 | 34 | 0.093 | ||
| ProSiteProfiles | 237 | 270 | 34 | 5.399 | ||
| ProSiteProfiles | 237 | 304 | 68 | 12.932 | ||
| SMART | 271 | 304 | 34 | 0.0016 | ||
| ProSiteProfiles | 271 | 304 | 34 | 8.526 | ||
| Pfam | 272 | 303 | 32 | 0.025 | ||
| TMHMM | 346 | 365 | 20 | - | – | |
| Phobius | 346 | 365 | 20 | - | – | |
| Phobius | 366 | 373 | 8 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Peptidyl-prolyl cis-trans isomerase activity | Catalysis of the reaction: peptidyl-proline (omega=180) = peptidyl-proline (omega=0). | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0550000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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