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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0013700 |
| Transcript ID | LotjaGi4g1v0013700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing family protein; TAIR: AT2G35030.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|O64766|PP185_ARATH Pentatricopeptide repeat-containing protein At2g35030, mitochondrial; TrEMBL-Plants: tr|A0A1J7IQC4|A0A1J7IQC4_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0013700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:1715541..1718696) extracted from Lotus japonicus Gifu genome v1.2.
AAATTAATGACGAAGAAGAAGTTACCTCCATTATCATTCATTCTGATGCATGCTCCCAAGCTCAACACGCACCCAACCTA TATCCTTAGGACCAGGTTAGCATCCACGTTCAGTCCCAATCCCAATTCTGAAATGAAGCGCTGCAATTCCGACATCTCAA GGCTTTGCAAGGAAGGGAGAACCGACCATGCACGCAAGCTGTTTGATCAAATGCCTCAACGGGATAAGCATCTGTGGACT ACAATGATCGATGGGTATATCAAGTGTGGTGCGATTAAGGAAGCCAGGAAGCTGTTTGATCAACCGGATGCCAAGAAAAG TGTGGTTACTTGGACTACTATGGTTAATGGGTACGTCAAGCTCAATCAGATTGAGGAAGCTGAGAGTTTGTTTTATGAGA TGCCAGAGAGAAATGAGTTGTCTTGGAACATAATGATTGGTGGGTATGGACAAAATGGCCAAATCGAGAAGGCTTTGGAT TTGTTTAGGAGAATGCCAAAGAGGAATCTAGTTTCGTGGAATATAATCATTAAGGCCTTGGCACGATGTGGGAGGATCGA GGATGCACAATGGCATTTTAATCAGATGCAGGAAAGGGATGTGAGTTCCTGGACTACCATGGTTGATGGTTTGGCAAAAA GTGGGAGAATTGATGATGCTCGAGCTCTTTTTGATAGGATGCCGTTACGAAATGTGGTCTCTTGGAATGCGATGATCACG GGTTATGCTCAAAATAGAAGATTGGATGAGGCTTTAGAGTTGTTTGAGAGGATGCCTGAGAGAGACATGGCTTCATGGAA TGCAATGCTCACCGGGTTCTTTCAAAATGGAGAACTCAATAGGGCAGAGAAGTTATTTGCTGAATTGCCACAAAAGGATG TGATTACTTGGACTTCTATGATGACAGGGTATGCCCAACATGGTCTAAGTGAAGAAGCATTGAAAATGTTTACCAAAATG CAAGCTAATGGTGGGTTAAAACCCAACAATGGAACTTTTGTGACCGTGTTAGGTGCTTGTAGTGGCTTAGCTAGTCTCAC TGAGGGCCAACAAATTCATCAGTTAATAAGTAAAACAGGTTTTCAGGAGAATACACGTGTGGTGTCAGCGCTGATAAATA TGTACTCAAAATGTGGGGAGTTGCATATTGCTAGGAAGATATTTGATGATGGGTTATTGAGGCAAAGAGATTTGATATCT TGGAATGGTATGATTGCCGCCTATGCGCACCATGGATACGGAAATGAGGCAATTAATCTATTTAATAAAATGCAAGAATT AGGTTTCCAAGCTAATGATGTCACCTATGTTGAACTTCTCACAGCTTGTAGTCATGCTGGATTAGTTGATGAGGGGATTC AATACTTTGATAAGCTTCTCAAGAACAGATCTATACAAGTCAAAGAAGATCATTATGCATGTCTGGTTGATCTTTGTGGT CGTGCAGGAAGATTGAAAGAAGCTTTCTATATAATTGAGGGGCTCGGGGTAAAGTTATCATTGTCTGTTTGGGGACCACT CCTTGCTGGATGTAATGTGCACGGAAATGCTGATATTGGGAAGCTTGTAGCTACGAAAATTTTGAAAGTTGAACACGAAA ATGCAGGTACTTATTCATTACTCTCTAATATGTATGCTTCAGTAGGGAAGTGGAAAGAAGCTGCCAATGTTAGGATGAAA ATGAAGGACAAGGGGTTAAAGAAACAACCAGGTTGTAGTTGGATTGAAGTTGGTAATACAGTGCAAGTATTTGTAGTTGG TGATAAGTCGCATTCTCAATCGGAGATGCTAGAATATTTACTACTTGGTCTACATACAAAAATGAAGAAGTTCGGGGACA TTCTAGATGATGATTTATCACGTGATGTAGAACTTTAGTGGCATAATTCTGTGTTGGCCAGAGCGTGCATTGTCCGTGGG AGTTGAAATGTGGGAAAGTTTTTTTGTTCTGGTGTTGGGAAAGCAATGAGACCGTCGGTGTAGATGATGAAAATTAAAGG TCCTTACATACAATCAAGATGGAGATTGAGGCTTTTTCATTTTTAAGTAAGCACGTTTTCTGCTGAGCCTCGCTTGAGTT GCTTCAAGTTCAGGGTAATGAGCAACTAGTGACAGGTTTGACATTGATTTTGGCTTTCTGATTTGGGACTCACAGGTTTG AAGAAGATATCTTCAAGACAGGTTCTTGCTCATGCTGTTGTCTTACAATTCAATTGAGACAGCATCCACCATCTCATCTT TTCTCAATCATGTTCTTGCTGACTGGACCTCATCTGCTTATGTAAACTGCTTTTCTTTTAATTGATGTAGGAGGGCCTAC TGACTTAAGTATGTTCAATTTGATCTAGAAATGTGAAACAAAGATTAAGCTGGTGATTTTTGTTTGGTATGTAGAATCTT AATTATGGAGTGGTTCTATGTTCTCAATGAAAGCCTCTTTTTGTTTAGAGGAGGCATCAATTAATAGCCATTTGATCAAA TAGTTTTCTGCTCATCTGCTTTCGGGAAAAAAAGTTTTCAGCTCATGATTAAATGTTATATAACAAAGCTCTTGGCATCC AATATGACAAAGCTAATACTAACATAAACTTGCCATGACTATACAACCAATATTCATGTTCGAAACTGCAAAGTAAATCT TGAATCGATATAACTTTCTGTCAACTTGGAAAAACTTTTTGCAATATTATCAGTAACAAACGAAATCTTGCAAAGAAAAA GGTGTCCTATGTCTCTGTCAATTGTCCCTCTGTTAAACGGGTACACAAATCTCACTTCCAATAGATGCTCCTGGTGACAT AAGGAAGTATGCCTCCATGGTAAAAGTACTCCTTTTCCACCTGAAAGTAGATATGCTGAATTAGTGGCTCAACCCAGTGA TGGACCACATTTGGATATATAATTGCATCAATAAAACAAACACGCATTAATGAAGGACAAGAGCTAAAGAAATTACCACT GTGTCAATGCAAACTGTGCAGGTGAAAAATTTTCCAGTATCAGTTTCGACATAGACCTCTTGGGTGTGGTTGACGCCTGA TTATTTTTTTCTTTCTGGAACTTTTTTTCTTTTTGGATTTGGGTGAAGGAAGGGGAAAAGTTGATTTTTGTTTCAATTTC TATAGCTTTTTGTTTTGTTGTTCTGAAACTTATTTC
CDS sequence (LotjaGi4g1v0013700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACGAAGAAGAAGTTACCTCCATTATCATTCATTCTGATGCATGCTCCCAAGCTCAACACGCACCCAACCTATATCCT TAGGACCAGGTTAGCATCCACGTTCAGTCCCAATCCCAATTCTGAAATGAAGCGCTGCAATTCCGACATCTCAAGGCTTT GCAAGGAAGGGAGAACCGACCATGCACGCAAGCTGTTTGATCAAATGCCTCAACGGGATAAGCATCTGTGGACTACAATG ATCGATGGGTATATCAAGTGTGGTGCGATTAAGGAAGCCAGGAAGCTGTTTGATCAACCGGATGCCAAGAAAAGTGTGGT TACTTGGACTACTATGGTTAATGGGTACGTCAAGCTCAATCAGATTGAGGAAGCTGAGAGTTTGTTTTATGAGATGCCAG AGAGAAATGAGTTGTCTTGGAACATAATGATTGGTGGGTATGGACAAAATGGCCAAATCGAGAAGGCTTTGGATTTGTTT AGGAGAATGCCAAAGAGGAATCTAGTTTCGTGGAATATAATCATTAAGGCCTTGGCACGATGTGGGAGGATCGAGGATGC ACAATGGCATTTTAATCAGATGCAGGAAAGGGATGTGAGTTCCTGGACTACCATGGTTGATGGTTTGGCAAAAAGTGGGA GAATTGATGATGCTCGAGCTCTTTTTGATAGGATGCCGTTACGAAATGTGGTCTCTTGGAATGCGATGATCACGGGTTAT GCTCAAAATAGAAGATTGGATGAGGCTTTAGAGTTGTTTGAGAGGATGCCTGAGAGAGACATGGCTTCATGGAATGCAAT GCTCACCGGGTTCTTTCAAAATGGAGAACTCAATAGGGCAGAGAAGTTATTTGCTGAATTGCCACAAAAGGATGTGATTA CTTGGACTTCTATGATGACAGGGTATGCCCAACATGGTCTAAGTGAAGAAGCATTGAAAATGTTTACCAAAATGCAAGCT AATGGTGGGTTAAAACCCAACAATGGAACTTTTGTGACCGTGTTAGGTGCTTGTAGTGGCTTAGCTAGTCTCACTGAGGG CCAACAAATTCATCAGTTAATAAGTAAAACAGGTTTTCAGGAGAATACACGTGTGGTGTCAGCGCTGATAAATATGTACT CAAAATGTGGGGAGTTGCATATTGCTAGGAAGATATTTGATGATGGGTTATTGAGGCAAAGAGATTTGATATCTTGGAAT GGTATGATTGCCGCCTATGCGCACCATGGATACGGAAATGAGGCAATTAATCTATTTAATAAAATGCAAGAATTAGGTTT CCAAGCTAATGATGTCACCTATGTTGAACTTCTCACAGCTTGTAGTCATGCTGGATTAGTTGATGAGGGGATTCAATACT TTGATAAGCTTCTCAAGAACAGATCTATACAAGTCAAAGAAGATCATTATGCATGTCTGGTTGATCTTTGTGGTCGTGCA GGAAGATTGAAAGAAGCTTTCTATATAATTGAGGGGCTCGGGGTAAAGTTATCATTGTCTGTTTGGGGACCACTCCTTGC TGGATGTAATGTGCACGGAAATGCTGATATTGGGAAGCTTGTAGCTACGAAAATTTTGAAAGTTGAACACGAAAATGCAG GTACTTATTCATTACTCTCTAATATGTATGCTTCAGTAGGGAAGTGGAAAGAAGCTGCCAATGTTAGGATGAAAATGAAG GACAAGGGGTTAAAGAAACAACCAGGTTGTAGTTGGATTGAAGTTGGTAATACAGTGCAAGTATTTGTAGTTGGTGATAA GTCGCATTCTCAATCGGAGATGCTAGAATATTTACTACTTGGTCTACATACAAAAATGAAGAAGTTCGGGGACATTCTAG ATGATGATTTATCACGTGATGTAGAACTTTAG
Protein sequence (LotjaGi4g1v0013700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTKKKLPPLSFILMHAPKLNTHPTYILRTRLASTFSPNPNSEMKRCNSDISRLCKEGRTDHARKLFDQMPQRDKHLWTTM IDGYIKCGAIKEARKLFDQPDAKKSVVTWTTMVNGYVKLNQIEEAESLFYEMPERNELSWNIMIGGYGQNGQIEKALDLF RRMPKRNLVSWNIIIKALARCGRIEDAQWHFNQMQERDVSSWTTMVDGLAKSGRIDDARALFDRMPLRNVVSWNAMITGY AQNRRLDEALELFERMPERDMASWNAMLTGFFQNGELNRAEKLFAELPQKDVITWTSMMTGYAQHGLSEEALKMFTKMQA NGGLKPNNGTFVTVLGACSGLASLTEGQQIHQLISKTGFQENTRVVSALINMYSKCGELHIARKIFDDGLLRQRDLISWN GMIAAYAHHGYGNEAINLFNKMQELGFQANDVTYVELLTACSHAGLVDEGIQYFDKLLKNRSIQVKEDHYACLVDLCGRA GRLKEAFYIIEGLGVKLSLSVWGPLLAGCNVHGNADIGKLVATKILKVEHENAGTYSLLSNMYASVGKWKEAANVRMKMK DKGLKKQPGCSWIEVGNTVQVFVVGDKSHSQSEMLEYLLLGLHTKMKKFGDILDDDLSRDVEL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 21 | 21 | - | – | |
| Phobius | 1 | 5 | 5 | - | – | |
| Phobius | 6 | 13 | 8 | - | – | |
| Phobius | 14 | 21 | 8 | - | – | |
| Phobius | 22 | 623 | 602 | - | – | |
| Gene3D | 35 | 135 | 101 | 2.4E-21 | ||
| ProSiteProfiles | 42 | 72 | 31 | 8.046 | ||
| TIGRFAM | 50 | 72 | 23 | 3.3E-4 | ||
| Pfam | 50 | 72 | 23 | 0.0081 | ||
| PANTHER | 56 | 133 | 78 | 9.5E-121 | – | |
| ProSiteProfiles | 73 | 103 | 31 | 8.627 | ||
| Pfam | 77 | 98 | 22 | 1.6E-4 | ||
| ProSiteProfiles | 105 | 135 | 31 | 10.698 | ||
| SUPERFAMILY | 106 | 260 | 155 | 3.07E-6 | ||
| TIGRFAM | 107 | 136 | 30 | 7.8E-8 | ||
| Pfam | 107 | 136 | 30 | 7.6E-9 | ||
| ProSiteProfiles | 136 | 170 | 35 | 12.277 | ||
| Gene3D | 136 | 225 | 90 | 4.5E-25 | ||
| PANTHER | 138 | 221 | 84 | 9.5E-121 | – | |
| Pfam | 139 | 167 | 29 | 1.6E-9 | ||
| TIGRFAM | 139 | 169 | 31 | 8.3E-9 | ||
| ProSiteProfiles | 171 | 197 | 27 | 7.18 | ||
| Pfam | 197 | 225 | 29 | 5.0E-7 | ||
| ProSiteProfiles | 198 | 228 | 31 | 10.709 | ||
| TIGRFAM | 201 | 230 | 30 | 6.0E-7 | ||
| PANTHER | 203 | 256 | 54 | 9.5E-121 | – | |
| Gene3D | 227 | 341 | 115 | 2.9E-30 | ||
| ProSiteProfiles | 229 | 263 | 35 | 12.956 | ||
| TIGRFAM | 231 | 260 | 30 | 1.8E-8 | ||
| Pfam | 231 | 260 | 30 | 4.7E-10 | ||
| TIGRFAM | 263 | 289 | 27 | 7.6E-4 | ||
| ProSiteProfiles | 264 | 290 | 27 | 6.314 | ||
| PANTHER | 265 | 354 | 90 | 9.5E-121 | – | |
| Pfam | 290 | 338 | 49 | 5.0E-12 | ||
| ProSiteProfiles | 291 | 325 | 35 | 11.246 | ||
| TIGRFAM | 293 | 327 | 35 | 1.0E-7 | ||
| SUPERFAMILY | 300 | 554 | 255 | 3.16E-5 | ||
| ProSiteProfiles | 327 | 361 | 35 | 6.018 | ||
| Gene3D | 342 | 462 | 121 | 4.2E-27 | ||
| PANTHER | 345 | 560 | 216 | 9.5E-121 | – | |
| ProSiteProfiles | 362 | 393 | 32 | 6.785 | ||
| Pfam | 367 | 388 | 22 | 0.23 | ||
| ProSiteProfiles | 395 | 429 | 35 | 11.137 | ||
| Pfam | 395 | 442 | 48 | 2.4E-10 | ||
| TIGRFAM | 397 | 430 | 34 | 1.9E-6 | ||
| ProSiteProfiles | 430 | 460 | 31 | 8.243 | ||
| Gene3D | 463 | 594 | 132 | 5.6E-12 | ||
| ProSiteProfiles | 466 | 496 | 31 | 5.996 | ||
| ProSiteProfiles | 532 | 566 | 35 | 9.745 | ||
| Pfam | 535 | 564 | 30 | 0.016 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0013700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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