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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0021300 |
| Transcript ID | LotjaGi4g1v0021300.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing family protein; TAIR: AT1G79490.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q9SAK0|PP132_ARATH Pentatricopeptide repeat-containing protein At1g79490, mitochondrial; TrEMBL-Plants: tr|A0A072UP25|A0A072UP25_MEDTR PPR containing plant protein; Found in the gene: LotjaGi4g1v0021300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:2607947..2612527) extracted from Lotus japonicus Gifu genome v1.2.
ATAAACGACCCTATCGCATGTTTCATTTTCCTTTGACCTAAACCACCTTCTTCTACACAAAACTCAGAGAGTAGCAGAAC TGGGTTGAGGTTTGATCCTCATTGAGACAATCTCTTCACCATTATACAACCTACCACTACAATTCCAGCTCAGGAACTCA AACTGTGTAAGCAATCTTGACAACTATCGCTTCCTTCTTCATATTGTTCAATGATTTATAATCGCAAATTGCTCTCTACA ACTACCAATCTCTGTAAACTCACCCACTATCTCTCCCGAGCTTACTCCTTCGTTTCCCCGACACCCTTTTGCCCAAAGTT AACGTTTTTGGCCTCAACAACAAGATTCACTTCCAGTTGGAGAATCCCAGGTTTGAGCAATGACACCAACTTTATGAGAT GTTACTGCAATAATGGTAGTGGGTCTAAGGAGTTTACTGAGGAAATTGAGTACTTGGATGAATCAGGTAGTGTTATTTAC AAGGGTAAGGGTGTAAGGTCTGTGGAGCCTGGGCTTGATGATCATGTGATGGTGGGTGATGTGAAGAAGCCCTTTATGAA TGCACTAGCTGTGGCTAAAATTGTTGAGGTTGTGAAAAGGTGGAAATGGGGTCCAGAATTGGATACCCAATTGGATAAAT TGCAGTTTGTGCCAAACATGACTCATGTTACTCAAGCCTTGAAGGTGGTTAATGATGGTGATGCAGGTTTGAGTTTGTTT AGGTGGGCTAAGAGGCAATCTTGGTATTCACCTAGTGATGACTGTTATGTTATGTTGTTTGACGGTTTGAACCGGAGTAG GGATTTTGATGGGGTTCAATTGTTGTTTGATGAGATGGTTGGTGATTCTGCGAATAGTGGGGTTTCCTTGCTTGTTGCGT GTAATCGAGTGATTCAGTACTTGGCTAAGGCTGAGAAGTTGGAAGTCTCTTTTTGCTGCTTTAAGAAAATTCAGGATGCG GGTTGTAAAATTGATACTGAGACGTATAATTCACTCATTACTTTGTTTTTGAATAAGGGTTTGCCTTATAAGGCATTTGA GATATATGAGAGCATGGAAAAGACCAGTTGTTTATTGGATAGTTCAACTTATGAATTGATGATCCCAAACTTAGCAAAGT CGGGCCGTCTTGATGCTGCTTTCAAACTTTTCCAAGAAATGAAAGGAAGAGGTTTTCGGCCAGGTTTGAACATCTTTGCA TCACTTGTTGATTCAATGGGGAAGGCGGGGAGATTGGACAGTGCAATGAAAGTTCACATGGAGATGCGAGGTTTCGGGTA CAGGCCACCCCCTACTATATATGTTTCTTTGATTGAATCTTATGTGAAATCTGGAAAGTTAGAAACTGCTCTAAGGCTTT GGGATGAGATGAAGATAGCGGGTTACAGGCCTAACTTTGCCTTGTATACCTTGGTGATTGAATCTCATGCAAAATCAGGG AAGCTTGACATTGCCATGTCCGCATTTTCAGATATGGAGAAAGCAGGATTTCTACCCACCCCGTCTACATATGCTTGTCT CTTGGAAATGCATGCTGCATCTGGACAAATTGATCATGCCATGAAACTGTACAATTCAATGACTAATGCAGGCTTAAGGC CTGGCCTAAGCACTTATACTGTTCTTTTAACTCTACTGGCTAATAAGAAGCTGGTGGATGTGGCTGCCAAAATTCTACTT GAAATGAAGGCCATGGGATATTCTGTGGATGTGACAGCTAGTGATGTTTTGATGGTGTATATTAAGGAAGGTTCAGTTGA TCTTGCTTTGAGGTGGCTGCGTTTCATGGGTTCATCAGGGATCAGAACCAATAACTTTATCATCAGGCAGTTGTTTGAGT CGTGCATGAAGAGCGGGTTATATGAATCGGCCAAGCCTCTTCTTGAAACATATGTTAACTCTGCTGCAAAAGTTGATTTG ATACTTTACACTTCCATTTTAGCACATCTTGTTAGGTGTCAGGAAGAAAAAAATGAGAGGCATTTGATGTCTATCCTTGG TGCTACAAAGCATAAGGCACACTCCTTTATGTGTGGACTTTTCACTGGGCCAGAACACAGGGGACAGCCAGTGTTATCTT TTGTCAGGGAATTCTTTCAAGGGGTTGATTATGAATTGGAGGAAGGTGCTGCTAAGTACTTTGTCAATGTTCTTCTCAAT TACCTAGTTCTTATGGGGCAGATAAATCGAGCTCGATGTGTTTGGAAGGTTGCTTATGAGAATAAACTTTTCCCAAAGGC TATTGTTTTCGATCAGCACATTGCTTGGTCCCTAGATGTTAGAAACTTGTCAGTTGGAGCTGCACTTATAGCAGTAGTGC ACACTCTTCATAGATTCAGAAAGCGCATGCTATATTATGGTATTGTGCCAAGACGGATTAAACTGGTTACAGGACCAACT TTGAAGATTGTGATTGCACAGATGTTGAGCTCAGTGGAGTCTCCATTTGAGGTGAGTAAAGTGGTTCTTAGGGCATCAGG AGATTCTGTCATGGAGTGGTTCAAGAAACCAATTGTTCAGAAGTTTCTTCTGAATGAAACTCCAACTAGGGCTGATATTC TGATGCACAAGCTGAACATACTTTTCCCCAGTTCTGCACCTGAAGTAAGATCTCTAGCACCTCCTAAAGCTCTCATTGCA GGCAGGGCAATGTAAACTGTTTTGATATATGTGGGCAGTAACTGGTGTTTGAGATGTTATTGTTAGTCCAAGGTTATCAG TGGTGCACACTCTTCACATATTCCAAAAGCTCATGCTATAAAGAGATATGTACTATTTAAGAATTTGGAATAAAATCTTA GAAGCTTCGTGTTCTTTTCCCCCAAAATTTTTTAGCAGTACATGCATAGAGATTGGTTTGTCATGGTTATGGTATTCATA TACGTTAATTAGGGTTTTCTATCATGGTGAAATTAGGATCAGTTTAGTTCATAATTTTCACATACTAGAGGATTCATGTA CCTATTTCTCATGTTTACTTAATTGTTATTACTGGGGATATCCCTCTTTGACTTCTTCCATTCCATTCTATCTATATTTT CCTTCATTCTGTTTCCTCTTCGGTAAAGGGATGACAAGGAGAGCATATGCCAGGTGCTCTTCCAACTCCCTCCTTTCATT CCTATATGTTCTTGCCTTTTCAATTTTTCTGCCAATTTCAGATGCCTGTGCTTTTGTGTTTGTAGCATTGGCCTATTGCT GAATTTTCATCCTTTTCGCGCCTATAATTTCTTAGTATTTTCTTTCGGGGTCTTAGTATTTGAAGGGTCTGGTTTAGTAG TGGTTGTTCAAACTCAACCACACGATTGCTGTTGTAACTGTGAATGATATTGTAGCTTACTTTGTGAAATAAATCTTACT TGGAGGAATTTACTCTTCTGATCAATGACTGCAGTAAAAGGGATTTAAATGCTGGTTTTGTATTTCTTCTTTCGGGAATA GTCATATCTCTATTACAGTATTACCTCATCTTTTGGTGTTAAATAATCTGGTACCTTTTTTTTTCTCCCCATGTTTTAGA CTCTACTCGAGTCGTGAAGGGTACAATCATCAGATACTAAAGGTGAAAAGCTTCTTGCCCAGCTTTATTTTACTAATTTT GTACTTCCAGTGCCTGTCTTTGATTTTTGGGAAATTAAATATGTTGTCTCAGACTGATGGGCTTTGTCAAGTTATTTGGT TTATGATAAGGTGGTGGTGTTTTTCAGATCCAAATAAAACCAGTACCCGGACACATGCCTGATCCCCATTAAGCTAGTGA ACATGAGAAATAGGTAGCTTTGTATGCTGGCAAGCAAATGGCATGTATCTACAAGGCTAAGGTGAAGAATAATGGTGCAA GGTTACAATGCCCCTGGTAGAAGTAGTGTTTTTCATGCAAAATTAAACTCTGATGTCCCTCCCAGATCAATTACTATAAT AATTGAGCAGCAGTGCAGCACTATTGTCGTTAATTATATTTTTTAAAATGGTATTCTGACGTTTTTGAGTTTTGATGTGT CACAGGGAGCATGGATTGAGTATTTGTGTTTTTTAAATTGTGTATCCTTCATCTTTTATACCCCATCTTTCCATGTAACA TTCTTGGAACTCCTTGTTGAACTTTTGCGCATTTTGTCAGTGGATGGTGTGCATCTTTGGATCCAAATGTATCCATGACA TTCATGATCCATATTGGTAATTCATTTGTCACTCAAAATTCTTGTGACTTTGTTCACTTGTTTTTCCTTTTTTATAAACT AATTAATCTTCTGGTGTATATGTCAAACTTGATAGTATATTTACAGAAGTTCGGAAACAATCAGTGAATTCTTGATATTT AGTTGATGTCATGGACTTTCAGTGCAGTGTTCCACTTTGTTTTCTCATGAGGTTCTTATGCTCAACAGTTATATGATGTT TGTAGTACATACTGGCTAAGAGAAGCAAGCAGCTATATGGTGCATCTTTGATTTGTGAATATGGCCACTGTAAATGTATG CTTAAATAATTATTTATGACTAGTGAGGAAGACATTTTATTGTTTGGAATTCTATCAGAAGATGATGAGTTATTTTGTTT ATCACAACCGATATAATCCTC
CDS sequence (LotjaGi4g1v0021300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATTTATAATCGCAAATTGCTCTCTACAACTACCAATCTCTGTAAACTCACCCACTATCTCTCCCGAGCTTACTCCTT CGTTTCCCCGACACCCTTTTGCCCAAAGTTAACGTTTTTGGCCTCAACAACAAGATTCACTTCCAGTTGGAGAATCCCAG GTTTGAGCAATGACACCAACTTTATGAGATGTTACTGCAATAATGGTAGTGGGTCTAAGGAGTTTACTGAGGAAATTGAG TACTTGGATGAATCAGGTAGTGTTATTTACAAGGGTAAGGGTGTAAGGTCTGTGGAGCCTGGGCTTGATGATCATGTGAT GGTGGGTGATGTGAAGAAGCCCTTTATGAATGCACTAGCTGTGGCTAAAATTGTTGAGGTTGTGAAAAGGTGGAAATGGG GTCCAGAATTGGATACCCAATTGGATAAATTGCAGTTTGTGCCAAACATGACTCATGTTACTCAAGCCTTGAAGGTGGTT AATGATGGTGATGCAGGTTTGAGTTTGTTTAGGTGGGCTAAGAGGCAATCTTGGTATTCACCTAGTGATGACTGTTATGT TATGTTGTTTGACGGTTTGAACCGGAGTAGGGATTTTGATGGGGTTCAATTGTTGTTTGATGAGATGGTTGGTGATTCTG CGAATAGTGGGGTTTCCTTGCTTGTTGCGTGTAATCGAGTGATTCAGTACTTGGCTAAGGCTGAGAAGTTGGAAGTCTCT TTTTGCTGCTTTAAGAAAATTCAGGATGCGGGTTGTAAAATTGATACTGAGACGTATAATTCACTCATTACTTTGTTTTT GAATAAGGGTTTGCCTTATAAGGCATTTGAGATATATGAGAGCATGGAAAAGACCAGTTGTTTATTGGATAGTTCAACTT ATGAATTGATGATCCCAAACTTAGCAAAGTCGGGCCGTCTTGATGCTGCTTTCAAACTTTTCCAAGAAATGAAAGGAAGA GGTTTTCGGCCAGGTTTGAACATCTTTGCATCACTTGTTGATTCAATGGGGAAGGCGGGGAGATTGGACAGTGCAATGAA AGTTCACATGGAGATGCGAGGTTTCGGGTACAGGCCACCCCCTACTATATATGTTTCTTTGATTGAATCTTATGTGAAAT CTGGAAAGTTAGAAACTGCTCTAAGGCTTTGGGATGAGATGAAGATAGCGGGTTACAGGCCTAACTTTGCCTTGTATACC TTGGTGATTGAATCTCATGCAAAATCAGGGAAGCTTGACATTGCCATGTCCGCATTTTCAGATATGGAGAAAGCAGGATT TCTACCCACCCCGTCTACATATGCTTGTCTCTTGGAAATGCATGCTGCATCTGGACAAATTGATCATGCCATGAAACTGT ACAATTCAATGACTAATGCAGGCTTAAGGCCTGGCCTAAGCACTTATACTGTTCTTTTAACTCTACTGGCTAATAAGAAG CTGGTGGATGTGGCTGCCAAAATTCTACTTGAAATGAAGGCCATGGGATATTCTGTGGATGTGACAGCTAGTGATGTTTT GATGGTGTATATTAAGGAAGGTTCAGTTGATCTTGCTTTGAGGTGGCTGCGTTTCATGGGTTCATCAGGGATCAGAACCA ATAACTTTATCATCAGGCAGTTGTTTGAGTCGTGCATGAAGAGCGGGTTATATGAATCGGCCAAGCCTCTTCTTGAAACA TATGTTAACTCTGCTGCAAAAGTTGATTTGATACTTTACACTTCCATTTTAGCACATCTTGTTAGGTGTCAGGAAGAAAA AAATGAGAGGCATTTGATGTCTATCCTTGGTGCTACAAAGCATAAGGCACACTCCTTTATGTGTGGACTTTTCACTGGGC CAGAACACAGGGGACAGCCAGTGTTATCTTTTGTCAGGGAATTCTTTCAAGGGGTTGATTATGAATTGGAGGAAGGTGCT GCTAAGTACTTTGTCAATGTTCTTCTCAATTACCTAGTTCTTATGGGGCAGATAAATCGAGCTCGATGTGTTTGGAAGGT TGCTTATGAGAATAAACTTTTCCCAAAGGCTATTGTTTTCGATCAGCACATTGCTTGGTCCCTAGATGTTAGAAACTTGT CAGTTGGAGCTGCACTTATAGCAGTAGTGCACACTCTTCATAGATTCAGAAAGCGCATGCTATATTATGGTATTGTGCCA AGACGGATTAAACTGGTTACAGGACCAACTTTGAAGATTGTGATTGCACAGATGTTGAGCTCAGTGGAGTCTCCATTTGA GGTGAGTAAAGTGGTTCTTAGGGCATCAGGAGATTCTGTCATGGAGTGGTTCAAGAAACCAATTGTTCAGAAGTTTCTTC TGAATGAAACTCCAACTAGGGCTGATATTCTGATGCACAAGCTGAACATACTTTTCCCCAGTTCTGCACCTGAAGTAAGA TCTCTAGCACCTCCTAAAGCTCTCATTGCAGGCAGGGCAATGTAA
Protein sequence (LotjaGi4g1v0021300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIYNRKLLSTTTNLCKLTHYLSRAYSFVSPTPFCPKLTFLASTTRFTSSWRIPGLSNDTNFMRCYCNNGSGSKEFTEEIE YLDESGSVIYKGKGVRSVEPGLDDHVMVGDVKKPFMNALAVAKIVEVVKRWKWGPELDTQLDKLQFVPNMTHVTQALKVV NDGDAGLSLFRWAKRQSWYSPSDDCYVMLFDGLNRSRDFDGVQLLFDEMVGDSANSGVSLLVACNRVIQYLAKAEKLEVS FCCFKKIQDAGCKIDTETYNSLITLFLNKGLPYKAFEIYESMEKTSCLLDSSTYELMIPNLAKSGRLDAAFKLFQEMKGR GFRPGLNIFASLVDSMGKAGRLDSAMKVHMEMRGFGYRPPPTIYVSLIESYVKSGKLETALRLWDEMKIAGYRPNFALYT LVIESHAKSGKLDIAMSAFSDMEKAGFLPTPSTYACLLEMHAASGQIDHAMKLYNSMTNAGLRPGLSTYTVLLTLLANKK LVDVAAKILLEMKAMGYSVDVTASDVLMVYIKEGSVDLALRWLRFMGSSGIRTNNFIIRQLFESCMKSGLYESAKPLLET YVNSAAKVDLILYTSILAHLVRCQEEKNERHLMSILGATKHKAHSFMCGLFTGPEHRGQPVLSFVREFFQGVDYELEEGA AKYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAALIAVVHTLHRFRKRMLYYGIVP RRIKLVTGPTLKIVIAQMLSSVESPFEVSKVVLRASGDSVMEWFKKPIVQKFLLNETPTRADILMHKLNILFPSSAPEVR SLAPPKALIAGRAM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 137 | 283 | 147 | 1.3E-17 | ||
| PANTHER | 180 | 348 | 169 | 3.9E-72 | – | |
| ProSiteProfiles | 182 | 216 | 35 | 6.555 | ||
| ProSiteProfiles | 220 | 254 | 35 | 6.445 | ||
| ProSiteProfiles | 255 | 289 | 35 | 10.03 | ||
| Pfam | 255 | 303 | 49 | 2.5E-9 | ||
| TIGRFAM | 258 | 290 | 33 | 1.6E-4 | ||
| Gene3D | 284 | 353 | 70 | 3.5E-14 | ||
| ProSiteProfiles | 290 | 324 | 35 | 12.923 | ||
| TIGRFAM | 293 | 324 | 32 | 1.5E-6 | ||
| ProSiteProfiles | 325 | 359 | 35 | 10.205 | ||
| TIGRFAM | 328 | 359 | 32 | 5.8E-4 | ||
| Pfam | 331 | 356 | 26 | 0.0066 | ||
| PANTHER | 332 | 403 | 72 | 3.9E-72 | – | |
| Gene3D | 354 | 479 | 126 | 3.9E-29 | ||
| ProSiteProfiles | 360 | 394 | 35 | 11.619 | ||
| TIGRFAM | 363 | 395 | 33 | 3.4E-7 | ||
| Pfam | 363 | 391 | 29 | 1.3E-5 | ||
| ProSiteProfiles | 395 | 429 | 35 | 10.512 | ||
| TIGRFAM | 398 | 430 | 33 | 1.9E-4 | ||
| Pfam | 399 | 427 | 29 | 0.0018 | ||
| PANTHER | 399 | 595 | 197 | 3.9E-72 | – | |
| ProSiteProfiles | 430 | 464 | 35 | 10.775 | ||
| TIGRFAM | 433 | 464 | 32 | 9.8E-5 | ||
| Pfam | 433 | 477 | 45 | 4.8E-8 | ||
| ProSiteProfiles | 465 | 499 | 35 | 8.188 | ||
| Gene3D | 480 | 595 | 116 | 5.1E-9 | ||
| ProSiteProfiles | 501 | 533 | 33 | 5.086 | ||
| ProSiteProfiles | 534 | 568 | 35 | 5.108 | ||
| ProSiteProfiles | 641 | 675 | 35 | 5.514 | ||
| SMART | 685 | 764 | 80 | 1.2E-9 | ||
| ProSiteProfiles | 688 | 764 | 77 | 12.531 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0021300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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