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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0021300 |
| Transcript ID | LotjaGi4g1v0021300.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing family protein; TAIR: AT1G79490.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q9SAK0|PP132_ARATH Pentatricopeptide repeat-containing protein At1g79490, mitochondrial; TrEMBL-Plants: tr|A0A072UP25|A0A072UP25_MEDTR PPR containing plant protein; Found in the gene: LotjaGi4g1v0021300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:2608082..2610601) extracted from Lotus japonicus Gifu genome v1.2.
ACTACAATTCCAGCTCAGGAACTCAAACTGTGTAAGCAATCTTGACAACTATCGCTTCCTTCTTCATATTGTTCAATGAT TTATAATCGCAAATTGCTCTCTACAACTACCAATCTCTGTAAACTCACCCACTATCTCTCCCGAGCTTACTCCTTCGTTT CCCCGACACCCTTTTGCCCAAAGTTAACGTTTTTGGCCTCAACAACAAGATTCACTTCCAGTTGGAGAATCCCAGGTTTG AGCAATGACACCAACTTTATGAGATGTTACTGCAATAATGGTAGTGGGTCTAAGGAGTTTACTGAGGAAATTGAGTACTT GGATGAATCAGGTAGTGTTATTTACAAGGGTAAGGGTGTAAGGTCTGTGGAGCCTGGGCTTGATGATCATGTGATGGTGG GTGATGTGAAGAAGCCCTTTATGAATGCACTAGCTGTGGCTAAAATTGTTGAGGTTGTGAAAAGGTGGAAATGGGGTCCA GAATTGGATACCCAATTGGATAAATTGCAGTTTGTGCCAAACATGACTCATGTTACTCAAGCCTTGAAGGTGGTTAATGA TGGTGATGCAGGTTTGAGTTTGTTTAGGTGGGCTAAGAGGCAATCTTGGTATTCACCTAGTGATGACTGTTATGTTATGT TGTTTGACGGTTTGAACCGGAGTAGGGATTTTGATGGGGTTCAATTGTTGTTTGATGAGATGGTTGGTGATTCTGCGAAT AGTGGGGTTTCCTTGCTTGTTGCGTGTAATCGAGTGATTCAGTACTTGGCTAAGGCTGAGAAGTTGGAAGTCTCTTTTTG CTGCTTTAAGAAAATTCAGGATGCGGGTTGTAAAATTGATACTGAGACGTATAATTCACTCATTACTTTGTTTTTGAATA AGGGTTTGCCTTATAAGGCATTTGAGATATATGAGAGCATGGAAAAGACCAGTTGTTTATTGGATAGTTCAACTTATGAA TTGATGATCCCAAACTTAGCAAAGTCGGGCCGTCTTGATGCTGCTTTCAAACTTTTCCAAGAAATGAAAGGAAGAGGTTT TCGGCCAGGTTTGAACATCTTTGCATCACTTGTTGATTCAATGGGGAAGGCGGGGAGATTGGACAGTGCAATGAAAGTTC ACATGGAGATGCGAGGTTTCGGGTACAGGCCACCCCCTACTATATATGTTTCTTTGATTGAATCTTATGTGAAATCTGGA AAGTTAGAAACTGCTCTAAGGCTTTGGGATGAGATGAAGATAGCGGGTTACAGGCCTAACTTTGCCTTGTATACCTTGGT GATTGAATCTCATGCAAAATCAGGGAAGCTTGACATTGCCATGTCCGCATTTTCAGATATGGAGAAAGCAGGATTTCTAC CCACCCCGTCTACATATGCTTGTCTCTTGGAAATGCATGCTGCATCTGGACAAATTGATCATGCCATGAAACTGTACAAT TCAATGACTAATGCAGGCTTAAGGCCTGGCCTAAGCACTTATACTGTTCTTTTAACTCTACTGGCTAATAAGAAGCTGGT GGATGTGGCTGCCAAAATTCTACTTGAAATGAAGGCCATGGGATATTCTGTGGATGTGACAGCTAGTGATGTTTTGATGG TGTATATTAAGGAAGGTTCAGTTGATCTTGCTTTGAGGTGGCTGCGTTTCATGGGTTCATCAGGGATCAGAACCAATAAC TTTATCATCAGGCAGTTGTTTGAGTCGTGCATGAAGAGCGGGTTATATGAATCGGCCAAGCCTCTTCTTGAAACATATGT TAACTCTGCTGCAAAAGTTGATTTGATACTTTACACTTCCATTTTAGCACATCTTGTTAGGTGTCAGGAAGAAAAAAATG AGAGGCATTTGATGTCTATCCTTGGTGCTACAAAGCATAAGGCACACTCCTTTATGTGTGGACTTTTCACTGGGCCAGAA CACAGGGGACAGCCAGTGTTATCTTTTGTCAGGGAATTCTTTCAAGGGGTTGATTATGAATTGGAGGAAGGTGCTGCTAA GTACTTTGTCAATGTTCTTCTCAATTACCTAGTTCTTATGGGGCAGATAAATCGAGCTCGATGTGTTTGGAAGGTTGCTT ATGAGAATAAACTTTTCCCAAAGGCTATTGTTTTCGATCAGCACATTGCTTGGTCCCTAGATGTTAGAAACTTGTCAGTT GGAGCTGCACTTATAGCAGTAGTGCACACTCTTCATAGATTCAGAAAGCGCATGCTATATTATGGTATTGTGCCAAGACG GATTAAACTGGTTACAGGACCAACTTTGAAGATTGTGATTGCACAGATGTTGAGCTCAGTGGAGTCTCCATTTGAGGTGA GTAAAGTGGTTCTTAGGGCATCAGGAGATTCTGTCATGGAGTGGTTCAAGAAACCAATTGTTCAGAAGTTTCTTCTGAAT GAAACTCCAACTAGGGCTGATATTCTGATGCACAAGCTGAACATACTTTTCCCCAGTTCTGCACCTGAAGTAAGATCTCT AGCACCTCCTAAAGCTCTCATTGCAGGCAGGGCAATGTAA
CDS sequence (LotjaGi4g1v0021300.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGATGTTACTGCAATAATGGTAGTGGGTCTAAGGAGTTTACTGAGGAAATTGAGTACTTGGATGAATCAGGTAGTGT TATTTACAAGGGTAAGGGTGTAAGGTCTGTGGAGCCTGGGCTTGATGATCATGTGATGGTGGGTGATGTGAAGAAGCCCT TTATGAATGCACTAGCTGTGGCTAAAATTGTTGAGGTTGTGAAAAGGTGGAAATGGGGTCCAGAATTGGATACCCAATTG GATAAATTGCAGTTTGTGCCAAACATGACTCATGTTACTCAAGCCTTGAAGGTGGTTAATGATGGTGATGCAGGTTTGAG TTTGTTTAGGTGGGCTAAGAGGCAATCTTGGTATTCACCTAGTGATGACTGTTATGTTATGTTGTTTGACGGTTTGAACC GGAGTAGGGATTTTGATGGGGTTCAATTGTTGTTTGATGAGATGGTTGGTGATTCTGCGAATAGTGGGGTTTCCTTGCTT GTTGCGTGTAATCGAGTGATTCAGTACTTGGCTAAGGCTGAGAAGTTGGAAGTCTCTTTTTGCTGCTTTAAGAAAATTCA GGATGCGGGTTGTAAAATTGATACTGAGACGTATAATTCACTCATTACTTTGTTTTTGAATAAGGGTTTGCCTTATAAGG CATTTGAGATATATGAGAGCATGGAAAAGACCAGTTGTTTATTGGATAGTTCAACTTATGAATTGATGATCCCAAACTTA GCAAAGTCGGGCCGTCTTGATGCTGCTTTCAAACTTTTCCAAGAAATGAAAGGAAGAGGTTTTCGGCCAGGTTTGAACAT CTTTGCATCACTTGTTGATTCAATGGGGAAGGCGGGGAGATTGGACAGTGCAATGAAAGTTCACATGGAGATGCGAGGTT TCGGGTACAGGCCACCCCCTACTATATATGTTTCTTTGATTGAATCTTATGTGAAATCTGGAAAGTTAGAAACTGCTCTA AGGCTTTGGGATGAGATGAAGATAGCGGGTTACAGGCCTAACTTTGCCTTGTATACCTTGGTGATTGAATCTCATGCAAA ATCAGGGAAGCTTGACATTGCCATGTCCGCATTTTCAGATATGGAGAAAGCAGGATTTCTACCCACCCCGTCTACATATG CTTGTCTCTTGGAAATGCATGCTGCATCTGGACAAATTGATCATGCCATGAAACTGTACAATTCAATGACTAATGCAGGC TTAAGGCCTGGCCTAAGCACTTATACTGTTCTTTTAACTCTACTGGCTAATAAGAAGCTGGTGGATGTGGCTGCCAAAAT TCTACTTGAAATGAAGGCCATGGGATATTCTGTGGATGTGACAGCTAGTGATGTTTTGATGGTGTATATTAAGGAAGGTT CAGTTGATCTTGCTTTGAGGTGGCTGCGTTTCATGGGTTCATCAGGGATCAGAACCAATAACTTTATCATCAGGCAGTTG TTTGAGTCGTGCATGAAGAGCGGGTTATATGAATCGGCCAAGCCTCTTCTTGAAACATATGTTAACTCTGCTGCAAAAGT TGATTTGATACTTTACACTTCCATTTTAGCACATCTTGTTAGGTGTCAGGAAGAAAAAAATGAGAGGCATTTGATGTCTA TCCTTGGTGCTACAAAGCATAAGGCACACTCCTTTATGTGTGGACTTTTCACTGGGCCAGAACACAGGGGACAGCCAGTG TTATCTTTTGTCAGGGAATTCTTTCAAGGGGTTGATTATGAATTGGAGGAAGGTGCTGCTAAGTACTTTGTCAATGTTCT TCTCAATTACCTAGTTCTTATGGGGCAGATAAATCGAGCTCGATGTGTTTGGAAGGTTGCTTATGAGAATAAACTTTTCC CAAAGGCTATTGTTTTCGATCAGCACATTGCTTGGTCCCTAGATGTTAGAAACTTGTCAGTTGGAGCTGCACTTATAGCA GTAGTGCACACTCTTCATAGATTCAGAAAGCGCATGCTATATTATGGTATTGTGCCAAGACGGATTAAACTGGTTACAGG ACCAACTTTGAAGATTGTGATTGCACAGATGTTGAGCTCAGTGGAGTCTCCATTTGAGGTGAGTAAAGTGGTTCTTAGGG CATCAGGAGATTCTGTCATGGAGTGGTTCAAGAAACCAATTGTTCAGAAGTTTCTTCTGAATGAAACTCCAACTAGGGCT GATATTCTGATGCACAAGCTGAACATACTTTTCCCCAGTTCTGCACCTGAAGTAAGATCTCTAGCACCTCCTAAAGCTCT CATTGCAGGCAGGGCAATGTAA
Protein sequence (LotjaGi4g1v0021300.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRCYCNNGSGSKEFTEEIEYLDESGSVIYKGKGVRSVEPGLDDHVMVGDVKKPFMNALAVAKIVEVVKRWKWGPELDTQL DKLQFVPNMTHVTQALKVVNDGDAGLSLFRWAKRQSWYSPSDDCYVMLFDGLNRSRDFDGVQLLFDEMVGDSANSGVSLL VACNRVIQYLAKAEKLEVSFCCFKKIQDAGCKIDTETYNSLITLFLNKGLPYKAFEIYESMEKTSCLLDSSTYELMIPNL AKSGRLDAAFKLFQEMKGRGFRPGLNIFASLVDSMGKAGRLDSAMKVHMEMRGFGYRPPPTIYVSLIESYVKSGKLETAL RLWDEMKIAGYRPNFALYTLVIESHAKSGKLDIAMSAFSDMEKAGFLPTPSTYACLLEMHAASGQIDHAMKLYNSMTNAG LRPGLSTYTVLLTLLANKKLVDVAAKILLEMKAMGYSVDVTASDVLMVYIKEGSVDLALRWLRFMGSSGIRTNNFIIRQL FESCMKSGLYESAKPLLETYVNSAAKVDLILYTSILAHLVRCQEEKNERHLMSILGATKHKAHSFMCGLFTGPEHRGQPV LSFVREFFQGVDYELEEGAAKYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAALIA VVHTLHRFRKRMLYYGIVPRRIKLVTGPTLKIVIAQMLSSVESPFEVSKVVLRASGDSVMEWFKKPIVQKFLLNETPTRA DILMHKLNILFPSSAPEVRSLAPPKALIAGRAM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 76 | 222 | 147 | 1.3E-17 | ||
| PANTHER | 119 | 286 | 168 | 2.8E-72 | – | |
| ProSiteProfiles | 121 | 155 | 35 | 6.555 | ||
| ProSiteProfiles | 159 | 193 | 35 | 6.445 | ||
| Pfam | 194 | 242 | 49 | 2.0E-9 | ||
| ProSiteProfiles | 194 | 228 | 35 | 10.03 | ||
| TIGRFAM | 197 | 229 | 33 | 1.5E-4 | ||
| Gene3D | 223 | 290 | 68 | 3.8E-14 | ||
| ProSiteProfiles | 229 | 263 | 35 | 12.923 | ||
| TIGRFAM | 232 | 263 | 32 | 1.3E-6 | ||
| ProSiteProfiles | 264 | 298 | 35 | 10.205 | ||
| TIGRFAM | 267 | 298 | 32 | 5.3E-4 | ||
| Pfam | 270 | 295 | 26 | 0.006 | ||
| PANTHER | 277 | 344 | 68 | 2.8E-72 | – | |
| Gene3D | 291 | 365 | 75 | 8.4E-15 | ||
| ProSiteProfiles | 299 | 333 | 35 | 11.619 | ||
| TIGRFAM | 302 | 334 | 33 | 3.1E-7 | ||
| Pfam | 302 | 330 | 29 | 1.2E-5 | ||
| ProSiteProfiles | 334 | 368 | 35 | 10.512 | ||
| TIGRFAM | 337 | 369 | 33 | 1.7E-4 | ||
| Pfam | 338 | 366 | 29 | 0.0016 | ||
| PANTHER | 338 | 534 | 197 | 2.8E-72 | – | |
| ProSiteProfiles | 369 | 403 | 35 | 10.775 | ||
| TIGRFAM | 372 | 403 | 32 | 8.9E-5 | ||
| Pfam | 372 | 416 | 45 | 4.4E-8 | ||
| Gene3D | 378 | 547 | 170 | 1.1E-20 | ||
| ProSiteProfiles | 404 | 438 | 35 | 8.188 | ||
| ProSiteProfiles | 440 | 472 | 33 | 5.086 | ||
| ProSiteProfiles | 473 | 507 | 35 | 5.108 | ||
| ProSiteProfiles | 580 | 614 | 35 | 5.514 | ||
| SMART | 624 | 703 | 80 | 1.2E-9 | ||
| ProSiteProfiles | 627 | 703 | 77 | 12.531 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0021300.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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