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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0042000 |
| Transcript ID | LotjaGi4g1v0042000.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transcription factor GTE4; TAIR: AT1G73150.1 global transcription factor group E3; Swiss-Prot: sp|Q9S7T1|GTE3_ARATH Transcription factor GTE3, chloroplastic; TrEMBL-Plants: tr|A0A0L9VGU3|A0A0L9VGU3_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0042000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:4958534..4961912) extracted from Lotus japonicus Gifu genome v1.2.
TCTCATCGCCTTTAAGAAGAGGCTCACGCACTCTCTTGTTCCTCGCTCAGATTAGGGTAACCGAAACCTCCAAACCCTAC ACGCTCTTTTTCTCTCTCTAAATCGCCGTTTCTCTCTCTAGATCCAGAATCGCCGCTCCTCCTCCGGCGGCGCGTGAGAA TCTCCATCGGCGCGTCAAACTGTGTGTTCTCACATCTTATGTTCTGTGCGACCCGCATTGGTGATTTCGCGCCAGAGGTT CGTCGGAGTCCCGCCGTGATTTGGCGCTCACATGGCGTCGGCGGTCTTAGCCAACCGTAACGAACCGAACTGGCCGCAGC AGCACAGAGGCGGTGCAACAGCAACAGGATTCATGGCGAAAACACCCTACCCTAATTCAAACCCTAACCCTAACCCTAAC CCTAAATTTCTCAACAACAAGAGGACTCAATCACCTTCCGATGACGCTTCCTCCATCAATCGCCGATCAAACGATGCCGT CTCCAACGGCTATTCCAACTACGCCACCTTCAACATCGCCTCGTACAGCAAGAAGGAGCTCAGCGAGCTCAAGGCGCGTC TTCAATCGGAGCTCGAAATCGTTCGCCAGGTCAAGCTCCGATTCGAGGCCGTCGAGTTTCAGCCCCGGCCGATGAACCAC AACCACAAGAAGCCCGTGAGCAAGAAGGTTGCCGGCACCAAGCGGCCGTTTCCGGCGAAGGATTTGAAGCGGTCGCAGTC GGAGGTTGGGAACATGATGAAGGGTTGTGGCCAGGTTCTGCAGAAGCTGATGAAGCATAAATTCGGGTGGATCTTCAACG TTCCTGTTGATGTTGTGAGTTTGGGGCTTCATGATTACTATGATATAGTGAAGAAACCCATGGATCTGGGTACTGTGAAA TCGAATCTGGCCAAGAATGTGTATGCTACACCGTCAGATTTTGCGTCCGATGTGCGGTTGACTTTCAACAATGCATTGGC CTACAACCCTAAGGGTCACGATGTTTACGCCATTGCAGAGCAGCTTCTGGTGAGGTTTGAGGAGCTGTATAGGCCGTTGC ATGAGAAATTCGAAGAGCCTGTTTTCGATGAGGAATTACAGGCTAGCTCTTGGAACCATGTTGAGCCAGAGAGGGTCATC AAGAAGAAGGAAAACCCAACCCCTCTTCCTCCGTCTGCGAAATCGCCAGAGCCATTACCTGTCCCTGAAAGGACCTCAAA CCCTCCATTGCTGCAGTCGCCTGTGCGCTCATCATCGCCAATGCAACCTTTGCCGCAGCCTACGAGGATGAGGCCCGCTT CGAAGCATCCGAAACCGAAGGCGAGGGACCCTAACAAGAGGGAAATGAACATGGAGGAAAAGCAAAGGTTGGGAATGATG TTGCAGAGTTTGCCATCCGAGAAATTGGAGCAGGTAGTGCAGATCATAAGGAGGAGAAATGGGAATTTGAAGCAGGATGG GGATGAAATCGAGCTTGATATTGAAGCTGTTGATACAGAGACCCTTTGGGAGCTTGATCGTTTTGTGACCAATTGGAGAA AGATGGTGAGCAAGATTAAGCGGCAGGAACTACTAATGGTCAATAATAATAATGACAATGACATTGACAATGATAATAAT GTGGCACCAAACAATGGCAATGGGGTAAAATAAAGCCTTGCTTGTCCTTTTTCTTCTGTTGAATGGGTTTGCTTTCCCAC GCAGCATGGAGAACAAGGTCATTGCAACATGCTAATGTTTTTGTTTGTGTTTACAGGAATCACCAGCTAGGGAGAATGTT GATGATGATGCAGCTGAACCACCAATTGAAGGGAAGAAGCAAAAGAAGATAGAAGCAGCTGGGGATGAAGATGTTGACAT TGGAGACGAGATGCCAATGAACAATGAAGATGTTGACATTGGGGATGAGATGCCAATGAACAACTTCCCACCTGTGGAGA TTGAGAAAGATAAAGATGTCGCCGGAGGCCATGCGAGTAGTTCTAGTAGCTCTGGCAGTTCTGGCAGTGATTCCTCATCA TCAAGTGGTATGAAACCTTTGCCCTGCATTGTGGTTGAAACTATCAACTATCAACTATCAACTATGCACTACAGGAATCT AATTTTGTATATTGTCACAGATTCGGACTCTGGTAGCTCATCAGGGAGTGATTCTGAAGCGGAGAATGGGAATTTGTAGC AGTGCAGGGCAGGGCTTTTGGAGCTAGTGGTCAACAAGAAGACCAGTGCTGGATAGCGGATGAAGAAACGTTTGCTTCGT TGTGATTATGCTTTGACTGCGTGAGCTAAGTATGTCAATTCAATTGATTCTGGTTGCTGCTATCGCATTTTCAGTGTAAT TAGGCCAAATTTATGATTGTGTTTGATTTTGTGTTACAGGGGTTGTGGACATTGTTGGTGGGTTGTTTCTGAGTGGAAGT AGTGGCTAGTTGCGTGATGTCACTACTATGAGCACTTGTTCCCAGGGGTTTGAACTTTGAATCGTCACTTGCCTGTAAAA GTGATTCCGTAAGCAAGAAGGGTTTGGAAGATAATGGACAAAATTTCTATGTCGGAATGCTGTGACATGCTAGTCTGATA GATGCGTCAGAGAGAGGGAGGGTAGAGGGATAGAGAATCAGTAGAACTAGTTAGTGCTTTCTTACGTTTCTAACTTGTAC ATAGTAGATAAATCATCCTTCGTGAGAAGGCAATTTTGTGGATCAGCAAGTAAACTTGATGGGATTGTTTATGAGATGGA GGCTACTTTTTCCATTTTGTATCTATCATGGAGGCACTTCACCGTCATCAACCAAGTAAAGTGAAAGGAAAAAGGGAGTA GTATCGTCTGGAAATCAAACTGTGTTTTGTGTAATAATTGTGCTTGAAAAGACACATTCAGCTAAGAGCCCGGAAATTCT CATGATTTTGAATAACAATTTTATCAGTATAGGAAGAGATGAAGCTGAAGCCTTCAAGGTAGAGAGTACAATGAAGAGTG CCCTTTGCGGGAGTGGGGCTGTTAAATAACCTCACTCCCCAGTCCCCATTGGCTTAGTATAATTAGAAAATGATGTTCAT TTCATTTGAATTGTATAAATGATTTTTTGGTAAATTATACTATCTCTTTGTGACCTTTTTATCTCAATATTCATTTGTTA CTTGAATTTATTTATAGACCAAATTGCTGGTTTATGGGTTTGTTAACGCCTAGGCAAAATCATAGGGGATATTGGAAAAG TATTCTCGGAAAAGTGTGAAATTGCAATTCTGATGTAAATAGACAAATTAATCCGTGAAAGTTCAGGCACTCACACGTTC GTTCATGGAGGAATGAAAGTCAATCAAATTAGTCTCTACCTCCCCCAATGTTAAAGAAATTGCTGATTTGACTTGTTAAG TGTAATTTGAACAAGCCAC
CDS sequence (LotjaGi4g1v0042000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGTCGGCGGTCTTAGCCAACCGTAACGAACCGAACTGGCCGCAGCAGCACAGAGGCGGTGCAACAGCAACAGGATT CATGGCGAAAACACCCTACCCTAATTCAAACCCTAACCCTAACCCTAACCCTAAATTTCTCAACAACAAGAGGACTCAAT CACCTTCCGATGACGCTTCCTCCATCAATCGCCGATCAAACGATGCCGTCTCCAACGGCTATTCCAACTACGCCACCTTC AACATCGCCTCGTACAGCAAGAAGGAGCTCAGCGAGCTCAAGGCGCGTCTTCAATCGGAGCTCGAAATCGTTCGCCAGGT CAAGCTCCGATTCGAGGCCGTCGAGTTTCAGCCCCGGCCGATGAACCACAACCACAAGAAGCCCGTGAGCAAGAAGGTTG CCGGCACCAAGCGGCCGTTTCCGGCGAAGGATTTGAAGCGGTCGCAGTCGGAGGTTGGGAACATGATGAAGGGTTGTGGC CAGGTTCTGCAGAAGCTGATGAAGCATAAATTCGGGTGGATCTTCAACGTTCCTGTTGATGTTGTGAGTTTGGGGCTTCA TGATTACTATGATATAGTGAAGAAACCCATGGATCTGGGTACTGTGAAATCGAATCTGGCCAAGAATGTGTATGCTACAC CGTCAGATTTTGCGTCCGATGTGCGGTTGACTTTCAACAATGCATTGGCCTACAACCCTAAGGGTCACGATGTTTACGCC ATTGCAGAGCAGCTTCTGGTGAGGTTTGAGGAGCTGTATAGGCCGTTGCATGAGAAATTCGAAGAGCCTGTTTTCGATGA GGAATTACAGGCTAGCTCTTGGAACCATGTTGAGCCAGAGAGGGTCATCAAGAAGAAGGAAAACCCAACCCCTCTTCCTC CGTCTGCGAAATCGCCAGAGCCATTACCTGTCCCTGAAAGGACCTCAAACCCTCCATTGCTGCAGTCGCCTGTGCGCTCA TCATCGCCAATGCAACCTTTGCCGCAGCCTACGAGGATGAGGCCCGCTTCGAAGCATCCGAAACCGAAGGCGAGGGACCC TAACAAGAGGGAAATGAACATGGAGGAAAAGCAAAGGTTGGGAATGATGTTGCAGAGTTTGCCATCCGAGAAATTGGAGC AGGTAGTGCAGATCATAAGGAGGAGAAATGGGAATTTGAAGCAGGATGGGGATGAAATCGAGCTTGATATTGAAGCTGTT GATACAGAGACCCTTTGGGAGCTTGATCGTTTTGTGACCAATTGGAGAAAGATGGTGAGCAAGATTAAGCGGCAGGAACT ACTAATGGTCAATAATAATAATGACAATGACATTGACAATGATAATAATGTGGCACCAAACAATGGCAATGGGGAATCAC CAGCTAGGGAGAATGTTGATGATGATGCAGCTGAACCACCAATTGAAGGGAAGAAGCAAAAGAAGATAGAAGCAGCTGGG GATGAAGATGTTGACATTGGAGACGAGATGCCAATGAACAATGAAGATGTTGACATTGGGGATGAGATGCCAATGAACAA CTTCCCACCTGTGGAGATTGAGAAAGATAAAGATGTCGCCGGAGGCCATGCGAGTAGTTCTAGTAGCTCTGGCAGTTCTG GCAGTGATTCCTCATCATCAAGTGATTCGGACTCTGGTAGCTCATCAGGGAGTGATTCTGAAGCGGAGAATGGGAATTTG TAG
Protein sequence (LotjaGi4g1v0042000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASAVLANRNEPNWPQQHRGGATATGFMAKTPYPNSNPNPNPNPKFLNNKRTQSPSDDASSINRRSNDAVSNGYSNYATF NIASYSKKELSELKARLQSELEIVRQVKLRFEAVEFQPRPMNHNHKKPVSKKVAGTKRPFPAKDLKRSQSEVGNMMKGCG QVLQKLMKHKFGWIFNVPVDVVSLGLHDYYDIVKKPMDLGTVKSNLAKNVYATPSDFASDVRLTFNNALAYNPKGHDVYA IAEQLLVRFEELYRPLHEKFEEPVFDEELQASSWNHVEPERVIKKKENPTPLPPSAKSPEPLPVPERTSNPPLLQSPVRS SSPMQPLPQPTRMRPASKHPKPKARDPNKREMNMEEKQRLGMMLQSLPSEKLEQVVQIIRRRNGNLKQDGDEIELDIEAV DTETLWELDRFVTNWRKMVSKIKRQELLMVNNNNDNDIDNDNNVAPNNGNGESPARENVDDDAAEPPIEGKKQKKIEAAG DEDVDIGDEMPMNNEDVDIGDEMPMNNFPPVEIEKDKDVAGGHASSSSSSGSSGSDSSSSSDSDSGSSSGSDSEAENGNL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 494 | 494 | 9.1E-157 | – | |
| PANTHER | 1 | 494 | 494 | 9.1E-157 | – | |
| MobiDBLite | 1 | 70 | 70 | - | – | |
| MobiDBLite | 42 | 70 | 29 | - | – | |
| Coils | 87 | 107 | 21 | - | – | |
| Gene3D | 121 | 268 | 148 | 6.0E-38 | ||
| SMART | 148 | 258 | 111 | 3.3E-29 | ||
| SUPERFAMILY | 148 | 265 | 118 | 7.85E-36 | ||
| CDD | 155 | 253 | 99 | 8.14746E-57 | ||
| Pfam | 159 | 243 | 85 | 3.8E-20 | ||
| ProSiteProfiles | 167 | 239 | 73 | 18.088 | ||
| PRINTS | 170 | 183 | 14 | 2.2E-17 | ||
| PRINTS | 186 | 202 | 17 | 2.2E-17 | ||
| PRINTS | 202 | 220 | 19 | 2.2E-17 | ||
| PRINTS | 220 | 239 | 20 | 2.2E-17 | ||
| MobiDBLite | 280 | 350 | 71 | - | – | |
| MobiDBLite | 292 | 310 | 19 | - | – | |
| MobiDBLite | 311 | 327 | 17 | - | – | |
| ProSiteProfiles | 342 | 423 | 82 | 21.364 | ||
| Gene3D | 345 | 424 | 80 | 3.0E-25 | ||
| Pfam | 351 | 413 | 63 | 1.5E-22 | ||
| Coils | 369 | 389 | 21 | - | – | |
| MobiDBLite | 433 | 454 | 22 | - | – | |
| MobiDBLite | 433 | 560 | 128 | - | – | |
| MobiDBLite | 455 | 481 | 27 | - | – | |
| MobiDBLite | 482 | 496 | 15 | - | – | |
| PANTHER | 495 | 557 | 63 | 9.1E-157 | – | |
| PANTHER | 495 | 557 | 63 | 9.1E-157 | – | |
| MobiDBLite | 522 | 560 | 39 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0042000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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