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LotjaGi4g1v0047800.1

Overview

Field Value
Gene ID LotjaGi4g1v0047800
Transcript ID LotjaGi4g1v0047800.1
Lotus japonicus genome version Gifu v1.2
Description Transcription factor jumonji (JmjC) domain protein; TAIR: AT4G21430.1 protein B160; Swiss-Prot: sp|Q9SSE9|JMJ25_ARATH Lysine-specific demethylase JMJ25; TrEMBL-Plants: tr|I1KQR1|I1KQR1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0047800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:5756072..5762303) extracted from Lotus japonicus Gifu genome v1.2.

GTTAGTTTGCACACTCTATCAGATTCACTGAGATGATAACATCACACCAGATTTGAACTGTCCTGATCATCCCTGAAATA ATCAATGATCCCACTCATTCCAATGCTGAAGATCACAGACCAAACAGGACTCAAAATTTACCTATAATTACACCAATGTG CCATTCTCAAATTTGATAATTCTAGGTTTTTTTTTCCCTTCCCAATAAATACACACACACACTCTTTTTGGGCTTGAAGA AAAACCCCCTTTTCCCCTTTTCTGCGTTCTGTGCAGAACACACAGGGTAATTGGGGTCTTAGGTTTTCACTTCCAATTTT CCCGAGAAAATTCCCAATTCTCCCGGAAAATCAACCCAATTATGGTGAAGAAATCAACGGCGGCGGTGAATGAGGAGGAG CCGGTGCCGGAGCATCTCCGGTGCGGGCGGACTGACGGGCGGCAATGGCGGTGCTGGCGGCGAGTGATGGGTGATCTGAA GCTTTGCGAGATTCACTACCTTCAAGGTCGTCATCGCCAGTACAAGGAGAAGGTCCCTGAGTCTCTGAAGCTTCAGAGGA AGCCCAGGAACAAGGACGGTGTTGCTTCTGGTTCTGGTTCTGGTTCCAGCAATGCCGAAGCTAGGGCACGGAGGGTTTGC CAAATTGCCAACAGGGTCAAGAGGAAGAAGAGGAAGCTCTCGTCGGAGGGCGGTTCTGATTCTGAGGCGGCGTTGTCTCC TGTTCGGAAGAAGAGTGGTGGTAGTGGTGGTGATATGCAGTTGGACCTGTTGAGGATGGTTCTGACTAGAGAGACTGAGA AGAGGAAGAGGAACAGCAATTCGAAGGCGGCGGCGATGAAGAAGAAGAAGAAGAAGATGATGAAGAAGAAGAAAAAGGAG GAGGAAGAAAATCAGTTCAGTGAAGGAGAATTGAGGAGAGAATTGCCTAATGGGGTGATGGAAATTTCACCAGCTTCAAC AATGCCCCATGATTACAACAATGTGGGTTCACATTGTGATGTGAAAGTGGGTGTTGCTGCTCTTACACCGCGTTACTTCA GGTCCAAGAATGTTGAGAGGGTCCCTGTTGGCAGGTTGCAGGTGAGTGAGTTGTACTTGTACTTGCTCTAATGTTGAGAG GTTTCAACTTTTTGATTCATGTTTCCTTGTTTAGGTTGCACCATACGGAACAAACTCAAACTTGAGGAACTGTAAGAGGA TGAAGTGTCATTGGTGTCATGGAACTAAACCTGAGAATCTGATCAAGTGTTCGAGCTGTCAGAAGGAGTTTTTCTGCACG GATTGCATCAAAGAGCGGTTTGTCTTTTTATAAGTTCATCTAACCAGACTGAACCTCTGACATTATTGTATCTGTGTACT TGTTTCAAAGTTTCATGTTGTGCTGAATTTCTTGCTCCATTGGTATTTTCATGTATATGGTGCTTTATTAGGCTATTTAT TCCCATTTAATAACTGTTTGATTTATATTTACTTATGTTTTATAAATTTTTTGGGGCAATGCAGAACTTGAATTCAGAAA GCATGATTTGATCAGTTGAATGCCGAGTTAGAGATTGTTCATATATAATTTGATAATTCCCCTTTAGCTGGAAGGAATAC CTCTTTTTAAAAGGGATGTGTGAATGTTTATCATTATCAACAGATTAAGAAAAGCAATGAAATTTAAAGTTGAGAATAAA AAAAATTCATTGCCAACAGAATCATTATCTTTTTTTGTTAACTTTCAGAAATTGTAAATAATGAAAGATATTTACCAATA TAATTTCTGTAGTCTCTTCAAAATATTGAGACATTTGCCAATTCTTTTTGAAACAAATAGGTGTTTTGATGCTCAAAATG AAGTAAAGAAAGAATGCCCAGTTTGTCGAGGAACTTGCACTTGTAAGGACTGCTTGGCAAGTCAATGTAATGACAGTGAA AGTAAGGTCTGACATCAAACATCGGCGCTTTTCTGCTTGAACAGCGTTTCTTCATTAGCATATGCTGACACTTCAGTTTA TGCACACTTGTTTCAGGAATATTTGGCTGGTAAAAGTAGAGTTGATAAAATATTGCATTTTCATTATTTGATCTGCATGC TCCTTCCAGTACTGAAGCGAATAAGTGAAGATCAGGATTCTGAGATAGAAACAGAAGCAAAAGTTAAAGGTTCTAATTTC ATTCTTCTAAGTTCTAACATTGATGTATTCTGAAGTAGCTTTTGTTGATTACAACAAATTTATCTTAGATTACTTTGTGT ATGGCAGGGAAAAATATTTCTGATATTCAAATCAAGCAGGTTGAATTTGGCGACAATGAGAAGCAGTACTGGTAAGTTCT CATCTACAGATGCTATCAGAAAAAAGTCAAATGGTTTCTGAGTTCTGACTGTTGTTAACAAATGTAACCCTTGTCTCAGC AATCATTGCAAAACACCCATCTTGGATCTCCATAGAAGCTGCCCTACTTGTTCATATAGCCTATGCTTAAGTTGTTGTGC GGAATTAAGTCAAGGAAGAACTTCTGGAGATATTGACTCATCTATGTTCAAGCTGCCTTATAGACTGAAAACCTGTATTG CCAGCGAGAGTCATTCTTTGGATCAGAAGGCCATTTCTACTGCTACTGCAATATTGCCGGAGTGTTCAAATGGCAATGGT ATTGATAGTCTATTATGCCCTCCTACAGACCATGGTGGTTGTGGTAATAGCCACCTTGATTTGAGATGTGTTTTTCCCTC TAGTTGGATCAAAGAAATTGAAGTAAAGGCAGAAGAAATTGTTTGCAGCTATGACTTCCCCGAAACATTGGATAAAAGTT CAAGCTGCTCATTATGCTTTGATACCGATCAAAATGATAACAGATATAAGCACTTGCAAAAAGCAGCTCTAAGGCAAGAT TCAACGGATAATTTCTTATTCTGTCCCACAGTTACGGACATCAGCGGTGATAACTTTGAGCACTTTCAGAAACATTGGGG AAAAGGCCACCCCGTAGTAGTTCGAGATGTCCTCCGAAGTACAACAAAGCCCTACTGGAATCCTCTGATCATGTTCTGTT CTTATCTCGAGCAGAGCATTGCAAGACATGAGAATAATAAAGACCTACTTGAATCTTGTTTGGATTGGTGTGAGGTTTGT ATATTAATTAATTGTACGTGTTAAGATTCTTTTAAGTTGATTTATTAACTTGGTACTCTTAGTTGCCAAAAATGGTTTAA GTTAAACTGTAGTTCAATATTATTTGTTCCATTCAATATATTTTCAGAACATGGACTAAAATTTAGTGTATTTAGTTTTT GCTATTGGTTATGAGCATATGCACAATCACAGACACAGACACAGACATGTATACACATTGTATGTTTAAACATATTCTTA ATAAATGCTGTACTTCCATTGAACTAAAATTCTGTTGTTCAATGTTAATTTAATTGGTAGGTGGAAATTAACATTAGGCA ATATTTTACCGGGTCTCTCAAAGGTCGTCCTCAGAGAAACACTTGCCATGAGATGCTGAAACTAAAGGGGTGGTTGTCTT CCCAAATATTCAAAGAGCAGTTTCCAGCTCATTTTGCTGAGGTAATTGATGCTCTACCAGTTCAAGAATACATGAATCCC GAGACTGGTCTTCTGAATTTGGCTGCAAATTTGTCACACGGGAGTGAGAGACATGACATCGGGCCATATGTCTATATTTC ACATGGCTGTGCTGATAGAGAAGCTGATTCTGTTACAAAACTCTGCTATGACTCATATGATGTGGTATGTGTCCTCATTA TCTTGCACTTCATTTCCTTAAGATGACTGGAGTAATGCTGTCCTGCACTTAAATACTATGGACTAAGCTTCTTTCGATAT TTCTTGGGTTGAAAAACTGTACCTGAACAGATATTAAAGATGATAACTTAAAGGATCTCATGTTCTGAAATAATAAACAT CCTCATGAAGATTATTTCTCCCGTATTAGTTTTATAGTATATGCAAAACAAACCTTGTCCCCTCTAAATGTATACTTGTT TCTGGTCGGTCGTGAAATATAAAATGTTTTGTTAATAATAGTCATGCTGCATTTATGTTCTTACAGTCCTCCATATTCCA AATTTACTTTTGTGTTTTAATAGCCTTGATTTCATATTCTTACTTAACACCACTTCTGAACCATGTTGAAAAGTTTATAC ATGAACTGAAACTTTGCTCCAATCCTTAGTCCAACATATAATCAATTTATTAGGAATGGTTCTAGCTTTATTATTAGCAT CTAAAATTGGTCTGTCAGAGGCCCACACCTAGAAGTTACAAGTTGCAACTGATTCCTTATCTCTTTCAAATAGCTGTAAT CTGTTGCACTTTGTGATTAGTAGAAAAAATTGTGTAGCTAATCCGTGCTAGTTTCTGTGTCTGATTTGTAATTCCAGGTT AATATTATGGCACATACCTCAGATGCCCCCATCTCTACAGAACAGCTTACGAAAATACGAAAATTACTAAAAAAGCACAA AGCTCTGTGTCAAATGGAGTCTGTTGCTACTGAGCACCTAAAAGAACTGAAAGTGGGAATGACATTATTGCATGCTGAAG AAACGGAACAGAAAGGCTCGCGGAGTATGGGAAAAGAAGGGTTAGACTTTTTCAGGAGAGTGAATAGAACATCATGCATC TCAACTGGTGCTAAAAAAGCTGCTAGCCAGAGTACAGACAGGAATATTTCCCAGGATGCAGAGTGTGATGTCTCTTCTGA TTCTGATTCTGATACTGATTCTGACCCCTCTTTATTTCTCAAGGGGACTGTTCAAACCACTGAATTGTCTACACATGATT ATCCTAGAAATCCCTCTGAAAGCTCATACAGTGATAAAAATAGACTTACTAAACCTTCAGGTGCCCAATGGGATGTCTTT CGTAGAGAAGATGTACCAAAGCTCATTGAATACCTTAAAAGGCACTATGATGAATTTTCTTATATCCATGACTATGACAA GAAAGTAAGTTCATTAAAAGGAAATCCCCAGGAGTAATTTTGATTGAGTTGGTAATTATTGATTTAATTGATTTATTTTT GTATACAGATCGTTCATCCAATTCTTGATCAGAGCATTTTTCTTGACAGTACCCACAAAATGAGACTTAAGGAGGAGTTC AGTAAGTACACGTGCTTCTATTTTTTTTATCATCTATTACAATCCTAGATAACTCATCTGACACGCCTGTGGCTATTACC AGAGATCGAACCATGGACTTTTCAGCAACATGTTGGAGAAGCTGTCATCATTCCTGCTGGTTGTCCATACCAGATCAGGA ATCCTAAGGTCATTCGCGTTAGCATAAACTCTCTCTCTCTCTCTCTCTAGTCAGTTAAAAGAAAAAGTTGAAATCTAATT GAATTTATAATATTACTTGAATTGGGATATCCATTCTTGTTTTGCTTTTTCTTCTCATTTTAACTGTTTCTTGATTGTGT GAATTCAAGAAGTATTGTTTCTTGATCTGCAGAGTTGTGTTCATGTGGTAATGGAATTTGTGTCCCCTGAAAATATTACC GAGTGTATCCAGTTGATTGATGAGGTCCGGCTGTTACCTGAAGACCATAAATCAAAAGTAGACAAGCTGGAGGTAGATTA TTTATGATATATTTACCAGTTCCTGCTTTCTTCTTTTAGTTGAATGCATAAAATTGAGAAACCTTTTATCTTTTTGGCGT TTATGTAAACAGGTGAAGAAAATGGCCCTTCAGAGCATGAGTTCAGCAATTAAGGAAATACGCCAACTTACATGCAAAAC ATGATTCAACCAGCTAAAATACACATACATGCCTGAGATTCTGAAGTTCATTTCTCAATTTGTATAGATTAATTGCTCAA ACTCATTAGGATCTAGCAAGGTACTAATTTAATTGATTGTTTTCAGTCCATACAATTTTGTCTGCTATGACACTTGTCTT ACCTCAATTTGAAATAAAAGTTTGTGGTCTGTATAGATTTTTTCAGTGGTTTCCTTGAATATAGATCAAATAATATCAAG AGGGAGAGAAGAAATGAAATTTGAATTGTTTTCTCACTGGTTTTAAACGCAAGGGCATAGATTGCTATTTATGATGTGTT TTTTTAGTTATCATTTCCTATGATAAGTACGATACATTAAAAAAAACTGTGCTAGTGTGAATCTAAAATATACATGAATC TCATTCTGAATCTTACAATTCAGGATTCACTTATGAACATCCAAAAATAAAGAACGGGCCTTAACATATCAG 

CDS sequence (LotjaGi4g1v0047800.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGTGAAGAAATCAACGGCGGCGGTGAATGAGGAGGAGCCGGTGCCGGAGCATCTCCGGTGCGGGCGGACTGACGGGCG GCAATGGCGGTGCTGGCGGCGAGTGATGGGTGATCTGAAGCTTTGCGAGATTCACTACCTTCAAGGTCGTCATCGCCAGT ACAAGGAGAAGGTCCCTGAGTCTCTGAAGCTTCAGAGGAAGCCCAGGAACAAGGACGGTGTTGCTTCTGGTTCTGGTTCT GGTTCCAGCAATGCCGAAGCTAGGGCACGGAGGGTTTGCCAAATTGCCAACAGGGTCAAGAGGAAGAAGAGGAAGCTCTC GTCGGAGGGCGGTTCTGATTCTGAGGCGGCGTTGTCTCCTGTTCGGAAGAAGAGTGGTGGTAGTGGTGGTGATATGCAGT TGGACCTGTTGAGGATGGTTCTGACTAGAGAGACTGAGAAGAGGAAGAGGAACAGCAATTCGAAGGCGGCGGCGATGAAG AAGAAGAAGAAGAAGATGATGAAGAAGAAGAAAAAGGAGGAGGAAGAAAATCAGTTCAGTGAAGGAGAATTGAGGAGAGA ATTGCCTAATGGGGTGATGGAAATTTCACCAGCTTCAACAATGCCCCATGATTACAACAATGTGGGTTCACATTGTGATG TGAAAGTGGGTGTTGCTGCTCTTACACCGCGTTACTTCAGGTCCAAGAATGTTGAGAGGGTCCCTGTTGGCAGGTTGCAG GTTGCACCATACGGAACAAACTCAAACTTGAGGAACTGTAAGAGGATGAAGTGTCATTGGTGTCATGGAACTAAACCTGA GAATCTGATCAAGTGTTCGAGCTGTCAGAAGGAGTTTTTCTGCACGGATTGCATCAAAGAGCGGTGTTTTGATGCTCAAA ATGAAGTAAAGAAAGAATGCCCAGTTTGTCGAGGAACTTGCACTTGTAAGGACTGCTTGGCAAGTCAATGTAATGACAGT GAAAGTAAGGAATATTTGGCTGGTAAAAGTAGAGTTGATAAAATATTGCATTTTCATTATTTGATCTGCATGCTCCTTCC AGTACTGAAGCGAATAAGTGAAGATCAGGATTCTGAGATAGAAACAGAAGCAAAAGTTAAAGGGAAAAATATTTCTGATA TTCAAATCAAGCAGGTTGAATTTGGCGACAATGAGAAGCAGTACTGCAATCATTGCAAAACACCCATCTTGGATCTCCAT AGAAGCTGCCCTACTTGTTCATATAGCCTATGCTTAAGTTGTTGTGCGGAATTAAGTCAAGGAAGAACTTCTGGAGATAT TGACTCATCTATGTTCAAGCTGCCTTATAGACTGAAAACCTGTATTGCCAGCGAGAGTCATTCTTTGGATCAGAAGGCCA TTTCTACTGCTACTGCAATATTGCCGGAGTGTTCAAATGGCAATGGTATTGATAGTCTATTATGCCCTCCTACAGACCAT GGTGGTTGTGGTAATAGCCACCTTGATTTGAGATGTGTTTTTCCCTCTAGTTGGATCAAAGAAATTGAAGTAAAGGCAGA AGAAATTGTTTGCAGCTATGACTTCCCCGAAACATTGGATAAAAGTTCAAGCTGCTCATTATGCTTTGATACCGATCAAA ATGATAACAGATATAAGCACTTGCAAAAAGCAGCTCTAAGGCAAGATTCAACGGATAATTTCTTATTCTGTCCCACAGTT ACGGACATCAGCGGTGATAACTTTGAGCACTTTCAGAAACATTGGGGAAAAGGCCACCCCGTAGTAGTTCGAGATGTCCT CCGAAGTACAACAAAGCCCTACTGGAATCCTCTGATCATGTTCTGTTCTTATCTCGAGCAGAGCATTGCAAGACATGAGA ATAATAAAGACCTACTTGAATCTTGTTTGGATTGGTGTGAGGTGGAAATTAACATTAGGCAATATTTTACCGGGTCTCTC AAAGGTCGTCCTCAGAGAAACACTTGCCATGAGATGCTGAAACTAAAGGGGTGGTTGTCTTCCCAAATATTCAAAGAGCA GTTTCCAGCTCATTTTGCTGAGGTAATTGATGCTCTACCAGTTCAAGAATACATGAATCCCGAGACTGGTCTTCTGAATT TGGCTGCAAATTTGTCACACGGGAGTGAGAGACATGACATCGGGCCATATGTCTATATTTCACATGGCTGTGCTGATAGA GAAGCTGATTCTGTTACAAAACTCTGCTATGACTCATATGATGTGGTTAATATTATGGCACATACCTCAGATGCCCCCAT CTCTACAGAACAGCTTACGAAAATACGAAAATTACTAAAAAAGCACAAAGCTCTGTGTCAAATGGAGTCTGTTGCTACTG AGCACCTAAAAGAACTGAAAGTGGGAATGACATTATTGCATGCTGAAGAAACGGAACAGAAAGGCTCGCGGAGTATGGGA AAAGAAGGGTTAGACTTTTTCAGGAGAGTGAATAGAACATCATGCATCTCAACTGGTGCTAAAAAAGCTGCTAGCCAGAG TACAGACAGGAATATTTCCCAGGATGCAGAGTGTGATGTCTCTTCTGATTCTGATTCTGATACTGATTCTGACCCCTCTT TATTTCTCAAGGGGACTGTTCAAACCACTGAATTGTCTACACATGATTATCCTAGAAATCCCTCTGAAAGCTCATACAGT GATAAAAATAGACTTACTAAACCTTCAGGTGCCCAATGGGATGTCTTTCGTAGAGAAGATGTACCAAAGCTCATTGAATA CCTTAAAAGGCACTATGATGAATTTTCTTATATCCATGACTATGACAAGAAAATCGTTCATCCAATTCTTGATCAGAGCA TTTTTCTTGACAGTACCCACAAAATGAGACTTAAGGAGGAGTTCAAGATCGAACCATGGACTTTTCAGCAACATGTTGGA GAAGCTGTCATCATTCCTGCTGGTTGTCCATACCAGATCAGGAATCCTAAGAGTTGTGTTCATGTGGTAATGGAATTTGT GTCCCCTGAAAATATTACCGAGTGTATCCAGTTGATTGATGAGGTCCGGCTGTTACCTGAAGACCATAAATCAAAAGTAG ACAAGCTGGAGGTGAAGAAAATGGCCCTTCAGAGCATGAGTTCAGCAATTAAGGAAATACGCCAACTTACATGCAAAACA TGA 

Protein sequence (LotjaGi4g1v0047800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MVKKSTAAVNEEEPVPEHLRCGRTDGRQWRCWRRVMGDLKLCEIHYLQGRHRQYKEKVPESLKLQRKPRNKDGVASGSGS GSSNAEARARRVCQIANRVKRKKRKLSSEGGSDSEAALSPVRKKSGGSGGDMQLDLLRMVLTRETEKRKRNSNSKAAAMK KKKKKMMKKKKKEEEENQFSEGELRRELPNGVMEISPASTMPHDYNNVGSHCDVKVGVAALTPRYFRSKNVERVPVGRLQ VAPYGTNSNLRNCKRMKCHWCHGTKPENLIKCSSCQKEFFCTDCIKERCFDAQNEVKKECPVCRGTCTCKDCLASQCNDS ESKEYLAGKSRVDKILHFHYLICMLLPVLKRISEDQDSEIETEAKVKGKNISDIQIKQVEFGDNEKQYCNHCKTPILDLH RSCPTCSYSLCLSCCAELSQGRTSGDIDSSMFKLPYRLKTCIASESHSLDQKAISTATAILPECSNGNGIDSLLCPPTDH GGCGNSHLDLRCVFPSSWIKEIEVKAEEIVCSYDFPETLDKSSSCSLCFDTDQNDNRYKHLQKAALRQDSTDNFLFCPTV TDISGDNFEHFQKHWGKGHPVVVRDVLRSTTKPYWNPLIMFCSYLEQSIARHENNKDLLESCLDWCEVEINIRQYFTGSL KGRPQRNTCHEMLKLKGWLSSQIFKEQFPAHFAEVIDALPVQEYMNPETGLLNLAANLSHGSERHDIGPYVYISHGCADR EADSVTKLCYDSYDVVNIMAHTSDAPISTEQLTKIRKLLKKHKALCQMESVATEHLKELKVGMTLLHAEETEQKGSRSMG KEGLDFFRRVNRTSCISTGAKKAASQSTDRNISQDAECDVSSDSDSDTDSDPSLFLKGTVQTTELSTHDYPRNPSESSYS DKNRLTKPSGAQWDVFRREDVPKLIEYLKRHYDEFSYIHDYDKKIVHPILDQSIFLDSTHKMRLKEEFKIEPWTFQQHVG EAVIIPAGCPYQIRNPKSCVHVVMEFVSPENITECIQLIDEVRLLPEDHKSKVDKLEVKKMALQSMSSAIKEIRQLTCKT 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite 1 20 20 -
PANTHER 12 1039 1028 0.0
PANTHER 12 1039 1028 0.0
ProSiteProfiles 15 61 47 20.553
Pfam 16 57 42 1.1E-15
MobiDBLite 54 70 17 -
MobiDBLite 54 183 130 -
MobiDBLite 154 168 15 -
Coils 156 183 28 -
MobiDBLite 169 183 15 -
ProSiteProfiles 258 304 47 9.037
SUPERFAMILY 560 1028 469 3.3E-23
SMART 668 1003 336 3.5E-43
ProSiteProfiles 687 1003 317 21.114
MobiDBLite 818 887 70 -
MobiDBLite 818 839 22 -
MobiDBLite 847 887 41 -
Pfam 889 986 98 3.1E-10

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0047800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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