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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0068200 |
| Transcript ID | LotjaGi4g1v0068200.3 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Acyl-[acyl]-carrier-protein] desaturase; TAIR: AT2G43710.2 Plant stearoyl-acyl-carrier-protein desaturase family protein; Swiss-Prot: sp|Q42807|STAD_SOYBN Stearoyl-[acyl]-carrier-protein] 9-desaturase, chloroplastic; TrEMBL-Plants: tr|Q4PZD4|Q4PZD4_LOTJA Acyl-[acyl]-carrier-protein] desaturase; Found in the gene: LotjaGi4g1v0068200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:8553638..8555386) extracted from Lotus japonicus Gifu genome v1.2.
GAGTTGATACAATTTGTTGCATAAAAATGGGTGTATTAAAATTGGTTTGTTGTTTGCTGGGTTTTTCTGGTGAGTTGAGT GACATAGGCATGATTTAGGCTGCTGCACAGAGCTGTATGTTCTGTAAAGTTGTCCTTTTTTTGCTTTTGTCTGTGCTATT TGCGTTAATGTAAGTGTATGACATCTTGGGTTCATGAACAATACGGTTTACACTAAAAATCAGTTTTACCAGTTCATGAT CATTCCAAATGGTGGTGTTGTGTTATTGCTCTGAAAGTCAGTTGAATTTCTTTTGCAGAGAGGTAGAAAGCATCAAGAAG CCTTTTACGCCTCCCAGAGAAGTGCATGTTCAAGTAACCCACTCTATGCCACCACAGAAGATTGAGATTTTCAAATCTCT TGAGGGTTGGGCTGAGGAGAACATCTTGGTTCACCTTAAACCGGTAGAAAAATGCTGGCAACCACAGGATTTTCTACCTG ATGCTTCCGCTGATGGATTTGAAGAGCAAGTGAGGGAACTGAGAGAGAGAGCAAAGGAGATTCCAGATGATTACTTTGTT GTTCTGGTTGGGGACATGATCACGGAAGAAGCCCTTCCTACTTACCAAACAATGCTTAACACTTTGGACGGCGTTCGTGA TGAAACAGGGGCCAGCCCTACTCCGTGGGGAGTTTGGACAAGGGCATGGACTGCTGAAGAAAATAGACACGGTGATCTGC TTAACAAATATCTTTACTTGTGTGGACGTGTTGATATGAGACAAATTGAGAAGACAATTCAGTACCTGATTGGGTCTGGA ATGGTAAGTCCCTATATATCTATTCATGATCTTAATTTTCAGCTATTGTAGTTAGTTTCATAATGATTCACACAATCATG CAAATTTCAAAGGCACTTGTATTTAGATATTACAGTCAATATAATCCAGAGACCCTTCATGGTTAATTTGGATTGGGGTG GGTGGTGCAGAAAATGCACATTTTATAGACTAATGCATTCAGATGCATTAATATGTCCGTATCAGCAAAACTCATGTACA CGTGGGTGATGTCTTGAAACTATTGAAGGATCTGCTTGGAGGGAATTTCAAGATTGAGATCCTACTTTTCTTGAAGTTTT ATACTTGATTGTTGTTCTGTTTAATTTTATTTATTTTTTCCTTTTTAACTGATCGAAATTGATTGTAGGATCCTCGAACT GAGAACAGCCCCTACCTTGGTTTCATCTACACTTCATTTCAAGAGAGGGCGACCTTTATTTCCCACGGAAACACGGCCAG GCATGCTAAGGAGCATGGTGATATAAAGCTGGCTCAGATCTGTGGTCTGATCGCCGCTGATGAGAAACGCCACGAGACCG CCTACACCAAGATTGTGGAAAAGCTGTTTGAGATTGATCCTGATGGAACAGTCATGGCATTTGCTGACATGATGAAGAAG AAAATTGCTATGCCAGCACACCTGATGTACGATGGCCGAGATGATAACCTGTTTGACAACTACTCTTCCGTAGCCCAGCG TATCGGGGTCTACACTGCCAGGGACTACGCTGATATACTCGAGTTTCTAGTCGGGAGGTGGAAGGTGGAGCAGATAACTG GACTGTCAGGCGAGGGACGGAAGGCTCAGGAGTACGTTTGTGGGCTGCCACCAAGAATCCGAAGGCTGGAGGAGAGAGCT GCAGCAAGAGTGAAGGAAACATCAACAATTCCATTCAGCTGGATTCATGACAGGGAAGTACTACTCTGA
CDS sequence (LotjaGi4g1v0068200.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCACCACAGAAGATTGAGATTTTCAAATCTCTTGAGGGTTGGGCTGAGGAGAACATCTTGGTTCACCTTAAACCGGT AGAAAAATGCTGGCAACCACAGGATTTTCTACCTGATGCTTCCGCTGATGGATTTGAAGAGCAAGTGAGGGAACTGAGAG AGAGAGCAAAGGAGATTCCAGATGATTACTTTGTTGTTCTGGTTGGGGACATGATCACGGAAGAAGCCCTTCCTACTTAC CAAACAATGCTTAACACTTTGGACGGCGTTCGTGATGAAACAGGGGCCAGCCCTACTCCGTGGGGAGTTTGGACAAGGGC ATGGACTGCTGAAGAAAATAGACACGGTGATCTGCTTAACAAATATCTTTACTTGTGTGGACGTGTTGATATGAGACAAA TTGAGAAGACAATTCAGTACCTGATTGGGTCTGGAATGGATCCTCGAACTGAGAACAGCCCCTACCTTGGTTTCATCTAC ACTTCATTTCAAGAGAGGGCGACCTTTATTTCCCACGGAAACACGGCCAGGCATGCTAAGGAGCATGGTGATATAAAGCT GGCTCAGATCTGTGGTCTGATCGCCGCTGATGAGAAACGCCACGAGACCGCCTACACCAAGATTGTGGAAAAGCTGTTTG AGATTGATCCTGATGGAACAGTCATGGCATTTGCTGACATGATGAAGAAGAAAATTGCTATGCCAGCACACCTGATGTAC GATGGCCGAGATGATAACCTGTTTGACAACTACTCTTCCGTAGCCCAGCGTATCGGGGTCTACACTGCCAGGGACTACGC TGATATACTCGAGTTTCTAGTCGGGAGGTGGAAGGTGGAGCAGATAACTGGACTGTCAGGCGAGGGACGGAAGGCTCAGG AGTACGTTTGTGGGCTGCCACCAAGAATCCGAAGGCTGGAGGAGAGAGCTGCAGCAAGAGTGAAGGAAACATCAACAATT CCATTCAGCTGGATTCATGACAGGGAAGTACTACTCTGA
Protein sequence (LotjaGi4g1v0068200.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPPQKIEIFKSLEGWAEENILVHLKPVEKCWQPQDFLPDASADGFEEQVRELRERAKEIPDDYFVVLVGDMITEEALPTY QTMLNTLDGVRDETGASPTPWGVWTRAWTAEENRHGDLLNKYLYLCGRVDMRQIEKTIQYLIGSGMDPRTENSPYLGFIY TSFQERATFISHGNTARHAKEHGDIKLAQICGLIAADEKRHETAYTKIVEKLFEIDPDGTVMAFADMMKKKIAMPAHLMY DGRDDNLFDNYSSVAQRIGVYTARDYADILEFLVGRWKVEQITGLSGEGRKAQEYVCGLPPRIRRLEERAAARVKETSTI PFSWIHDREVLL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 331 | 331 | 6.2E-221 | – | |
| PIRSF | 1 | 332 | 332 | 3.6E-181 | ||
| PANTHER | 1 | 331 | 331 | 6.2E-221 | ||
| Gene3D | 1 | 332 | 332 | 5.9E-178 | ||
| SUPERFAMILY | 2 | 331 | 330 | 4.27E-128 | ||
| CDD | 4 | 310 | 307 | 0.0 | ||
| Pfam | 5 | 326 | 322 | 2.2E-159 | ||
| ProSitePatterns | 252 | 271 | 20 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Fatty acid metabolic process | The chemical reactions and pathways involving fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis. | ||
| Biological process | Fatty acid biosynthetic process | The chemical reactions and pathways resulting in the formation of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes. | ||
| Molecular function | Oxidoreductase activity | Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. | ||
| Molecular function | Acyl-[acyl-carrier-protein] desaturase activity | Catalysis of the reaction: stearoyl-[acyl-carrier protein] + reduced acceptor + O2 = oleoyl-[acyl-carrier protein] + acceptor + H2O. The enzyme requires ferredoxin. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of LotjaGi4g1v0068200.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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